Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03130 and HGI48_RS03135 are separated by 492 nucleotides HGI48_RS03135 and HGI48_RS03140 are separated by 70 nucleotides HGI48_RS03140 and HGI48_RS03145 are separated by 188 nucleotides
HGI48_RS03130: HGI48_RS03130 - transcriptional regulator ArgR, at 664,540 to 665,010
_RS03130
HGI48_RS03135: HGI48_RS03135 - malate dehydrogenase, at 665,503 to 666,444
_RS03135
HGI48_RS03140: HGI48_RS03140 - helix-turn-helix domain-containing protein, at 666,515 to 666,796
_RS03140
HGI48_RS03145: HGI48_RS03145 - putative DNA-binding transcriptional regulator, at 666,985 to 667,371
_RS03145
Position (kb) 665
666
667 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 664.504 kb on + strand at 664.505 kb on - strand at 664.541 kb on + strand at 664.541 kb on + strand at 664.542 kb on - strand at 664.568 kb on - strand at 664.577 kb on + strand at 664.874 kb on - strand, within HGI48_RS03130 at 665.090 kb on - strand at 665.141 kb on + strand at 665.141 kb on + strand at 665.142 kb on - strand at 665.142 kb on - strand at 665.147 kb on - strand at 665.235 kb on + strand at 665.235 kb on + strand at 665.235 kb on + strand at 665.236 kb on - strand at 665.268 kb on + strand at 665.296 kb on + strand at 665.301 kb on + strand at 665.301 kb on + strand at 665.301 kb on + strand at 665.301 kb on + strand at 665.302 kb on - strand at 665.332 kb on - strand at 665.350 kb on + strand at 665.373 kb on - strand at 665.374 kb on + strand at 665.374 kb on + strand at 665.375 kb on - strand at 665.391 kb on + strand at 665.391 kb on + strand at 665.391 kb on + strand at 665.391 kb on + strand at 665.391 kb on + strand at 665.391 kb on + strand at 665.391 kb on + strand at 665.392 kb on - strand at 665.392 kb on - strand at 665.395 kb on + strand at 665.395 kb on + strand at 665.395 kb on + strand at 665.395 kb on + strand at 665.396 kb on - strand at 665.457 kb on + strand at 665.482 kb on + strand at 665.487 kb on + strand at 665.716 kb on - strand at 665.776 kb on - strand, within HGI48_RS03135 at 665.915 kb on - strand, within HGI48_RS03135 at 665.955 kb on + strand, within HGI48_RS03135 at 666.111 kb on + strand, within HGI48_RS03135 at 666.180 kb on + strand, within HGI48_RS03135 at 666.442 kb on + strand at 666.442 kb on + strand at 666.443 kb on - strand at 666.513 kb on + strand at 666.513 kb on + strand at 666.513 kb on + strand at 666.513 kb on + strand at 666.513 kb on + strand at 666.513 kb on + strand at 666.514 kb on - strand at 666.517 kb on - strand at 666.567 kb on - strand, within HGI48_RS03140 at 666.567 kb on - strand, within HGI48_RS03140 at 666.588 kb on + strand, within HGI48_RS03140 at 666.588 kb on + strand, within HGI48_RS03140 at 666.588 kb on + strand, within HGI48_RS03140 at 666.588 kb on + strand at 666.588 kb on + strand, within HGI48_RS03140 at 666.589 kb on - strand, within HGI48_RS03140 at 666.589 kb on - strand, within HGI48_RS03140 at 666.589 kb on - strand, within HGI48_RS03140 at 666.591 kb on + strand, within HGI48_RS03140 at 666.592 kb on - strand, within HGI48_RS03140 at 666.606 kb on - strand, within HGI48_RS03140 at 666.639 kb on - strand at 666.672 kb on - strand, within HGI48_RS03140 at 666.716 kb on + strand, within HGI48_RS03140 at 666.716 kb on + strand, within HGI48_RS03140 at 666.717 kb on - strand, within HGI48_RS03140 at 666.717 kb on - strand, within HGI48_RS03140 at 666.757 kb on + strand, within HGI48_RS03140 at 666.757 kb on + strand, within HGI48_RS03140 at 666.758 kb on - strand, within HGI48_RS03140 at 666.758 kb on - strand, within HGI48_RS03140 at 666.797 kb on - strand at 666.814 kb on + strand at 666.814 kb on + strand at 666.814 kb on + strand at 666.815 kb on - strand at 666.815 kb on - strand at 666.817 kb on + strand at 666.830 kb on + strand at 666.830 kb on + strand at 666.830 kb on + strand at 666.831 kb on - strand at 666.833 kb on + strand at 666.833 kb on + strand at 666.839 kb on + strand at 666.839 kb on + strand at 666.839 kb on + strand at 666.839 kb on + strand at 666.839 kb on + strand at 666.841 kb on + strand at 666.841 kb on + strand at 666.841 kb on + strand at 666.841 kb on + strand at 666.841 kb on + strand at 666.842 kb on - strand at 666.842 kb on - strand at 666.842 kb on - strand at 666.842 kb on - strand at 666.842 kb on - strand at 666.896 kb on - strand at 666.951 kb on - strand at 666.951 kb on - strand at 666.962 kb on - strand at 667.060 kb on - strand, within HGI48_RS03145 at 667.126 kb on + strand, within HGI48_RS03145 at 667.127 kb on - strand, within HGI48_RS03145 at 667.132 kb on - strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.212 kb on + strand, within HGI48_RS03145 at 667.213 kb on - strand, within HGI48_RS03145 at 667.213 kb on - strand at 667.213 kb on - strand, within HGI48_RS03145 at 667.213 kb on - strand, within HGI48_RS03145 at 667.213 kb on - strand, within HGI48_RS03145 at 667.238 kb on - strand, within HGI48_RS03145 at 667.247 kb on + strand, within HGI48_RS03145 at 667.247 kb on + strand, within HGI48_RS03145 at 667.247 kb on + strand at 667.247 kb on + strand, within HGI48_RS03145 at 667.247 kb on + strand, within HGI48_RS03145 at 667.247 kb on + strand at 667.247 kb on + strand, within HGI48_RS03145 at 667.248 kb on - strand, within HGI48_RS03145 at 667.248 kb on - strand, within HGI48_RS03145 at 667.248 kb on - strand, within HGI48_RS03145 at 667.248 kb on - strand, within HGI48_RS03145 at 667.279 kb on + strand, within HGI48_RS03145 at 667.279 kb on + strand, within HGI48_RS03145 at 667.279 kb on + strand, within HGI48_RS03145 at 667.279 kb on + strand, within HGI48_RS03145 at 667.279 kb on + strand at 667.279 kb on + strand, within HGI48_RS03145 at 667.279 kb on + strand, within HGI48_RS03145 at 667.279 kb on + strand, within HGI48_RS03145 at 667.279 kb on + strand, within HGI48_RS03145 at 667.279 kb on + strand, within HGI48_RS03145 at 667.279 kb on + strand, within HGI48_RS03145 at 667.280 kb on - strand, within HGI48_RS03145 at 667.280 kb on - strand at 667.280 kb on - strand, within HGI48_RS03145 at 667.280 kb on - strand, within HGI48_RS03145 at 667.280 kb on - strand, within HGI48_RS03145 at 667.280 kb on - strand, within HGI48_RS03145 at 667.281 kb on + strand, within HGI48_RS03145 at 667.281 kb on + strand, within HGI48_RS03145 at 667.281 kb on + strand, within HGI48_RS03145 at 667.281 kb on + strand, within HGI48_RS03145 at 667.282 kb on - strand, within HGI48_RS03145 at 667.282 kb on - strand, within HGI48_RS03145 at 667.282 kb on - strand, within HGI48_RS03145 at 667.282 kb on - strand, within HGI48_RS03145 at 667.369 kb on + strand at 667.370 kb on - strand at 667.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 664,504 + +0.7 664,505 - -2.1 664,541 + -0.7 664,541 + -0.6 664,542 - +1.7 664,568 - -0.7 664,577 + +0.7 664,874 - HGI48_RS03130 0.71 -1.3 665,090 - -0.4 665,141 + -0.8 665,141 + +0.7 665,142 - -1.3 665,142 - +0.4 665,147 - +0.5 665,235 + -0.3 665,235 + -2.1 665,235 + -0.6 665,236 - -2.6 665,268 + -0.7 665,296 + -0.1 665,301 + -1.1 665,301 + +0.4 665,301 + -1.4 665,301 + -0.3 665,302 - +0.7 665,332 - -0.3 665,350 + -0.6 665,373 - -0.6 665,374 + +0.7 665,374 + -0.7 665,375 - -1.0 665,391 + +0.3 665,391 + -0.3 665,391 + +0.1 665,391 + -0.8 665,391 + -1.3 665,391 + -0.1 665,391 + +0.1 665,392 - -2.5 665,392 - -0.7 665,395 + +2.5 665,395 + -1.3 665,395 + +1.0 665,395 + -0.4 665,396 - +0.7 665,457 + -1.6 665,482 + +0.7 665,487 + +1.5 665,716 - +1.4 665,776 - HGI48_RS03135 0.29 -2.1 665,915 - HGI48_RS03135 0.44 -2.1 665,955 + HGI48_RS03135 0.48 -1.9 666,111 + HGI48_RS03135 0.65 +0.3 666,180 + HGI48_RS03135 0.72 -0.0 666,442 + -0.4 666,442 + -2.1 666,443 - -0.2 666,513 + -0.5 666,513 + +0.4 666,513 + -1.6 666,513 + -0.9 666,513 + +0.7 666,513 + -0.5 666,514 - -0.0 666,517 - -0.1 666,567 - HGI48_RS03140 0.18 +0.2 666,567 - HGI48_RS03140 0.18 +4.3 666,588 + HGI48_RS03140 0.26 -0.5 666,588 + HGI48_RS03140 0.26 -0.0 666,588 + HGI48_RS03140 0.26 -0.3 666,588 + +0.1 666,588 + HGI48_RS03140 0.26 -0.0 666,589 - HGI48_RS03140 0.26 -1.1 666,589 - HGI48_RS03140 0.26 +1.3 666,589 - HGI48_RS03140 0.26 +0.3 666,591 + HGI48_RS03140 0.27 +0.1 666,592 - HGI48_RS03140 0.27 +0.3 666,606 - HGI48_RS03140 0.32 -0.9 666,639 - +0.7 666,672 - HGI48_RS03140 0.56 -1.8 666,716 + HGI48_RS03140 0.71 -0.5 666,716 + HGI48_RS03140 0.71 -1.2 666,717 - HGI48_RS03140 0.72 -1.3 666,717 - HGI48_RS03140 0.72 -0.5 666,757 + HGI48_RS03140 0.86 +1.3 666,757 + HGI48_RS03140 0.86 +0.5 666,758 - HGI48_RS03140 0.86 -1.0 666,758 - HGI48_RS03140 0.86 -0.5 666,797 - -0.6 666,814 + +1.1 666,814 + -0.3 666,814 + -0.7 666,815 - +0.3 666,815 - -0.8 666,817 + -1.1 666,830 + -0.1 666,830 + -0.3 666,830 + -0.3 666,831 - +0.3 666,833 + -0.0 666,833 + +1.4 666,839 + -0.3 666,839 + -1.3 666,839 + +0.4 666,839 + -0.0 666,839 + -0.2 666,841 + -1.9 666,841 + +1.8 666,841 + -0.3 666,841 + +0.1 666,841 + +0.1 666,842 - -0.6 666,842 - -0.4 666,842 - +0.1 666,842 - -0.0 666,842 - -0.9 666,896 - -0.3 666,951 - +1.2 666,951 - +3.5 666,962 - +1.5 667,060 - HGI48_RS03145 0.19 -0.9 667,126 + HGI48_RS03145 0.36 -0.9 667,127 - HGI48_RS03145 0.37 +0.2 667,132 - HGI48_RS03145 0.38 -0.5 667,212 + HGI48_RS03145 0.59 -1.6 667,212 + HGI48_RS03145 0.59 -1.3 667,212 + HGI48_RS03145 0.59 -0.4 667,212 + HGI48_RS03145 0.59 +0.7 667,212 + HGI48_RS03145 0.59 -1.6 667,212 + HGI48_RS03145 0.59 +0.7 667,212 + HGI48_RS03145 0.59 -0.7 667,212 + HGI48_RS03145 0.59 -0.1 667,212 + HGI48_RS03145 0.59 +0.3 667,212 + HGI48_RS03145 0.59 +0.7 667,213 - HGI48_RS03145 0.59 -0.1 667,213 - +1.4 667,213 - HGI48_RS03145 0.59 -0.5 667,213 - HGI48_RS03145 0.59 -0.3 667,213 - HGI48_RS03145 0.59 +0.3 667,238 - HGI48_RS03145 0.65 -0.3 667,247 + HGI48_RS03145 0.68 +4.3 667,247 + HGI48_RS03145 0.68 +0.6 667,247 + -0.9 667,247 + HGI48_RS03145 0.68 -1.6 667,247 + HGI48_RS03145 0.68 -1.3 667,247 + +0.7 667,247 + HGI48_RS03145 0.68 -0.6 667,248 - HGI48_RS03145 0.68 -0.5 667,248 - HGI48_RS03145 0.68 -0.6 667,248 - HGI48_RS03145 0.68 -0.3 667,248 - HGI48_RS03145 0.68 -0.1 667,279 + HGI48_RS03145 0.76 -1.0 667,279 + HGI48_RS03145 0.76 -1.3 667,279 + HGI48_RS03145 0.76 -1.2 667,279 + HGI48_RS03145 0.76 -1.5 667,279 + +3.3 667,279 + HGI48_RS03145 0.76 -0.1 667,279 + HGI48_RS03145 0.76 -0.6 667,279 + HGI48_RS03145 0.76 +0.7 667,279 + HGI48_RS03145 0.76 -0.3 667,279 + HGI48_RS03145 0.76 -0.6 667,279 + HGI48_RS03145 0.76 -0.6 667,280 - HGI48_RS03145 0.76 +0.4 667,280 - +0.1 667,280 - HGI48_RS03145 0.76 -1.3 667,280 - HGI48_RS03145 0.76 +1.1 667,280 - HGI48_RS03145 0.76 -0.3 667,280 - HGI48_RS03145 0.76 -1.6 667,281 + HGI48_RS03145 0.76 -0.4 667,281 + HGI48_RS03145 0.76 -0.6 667,281 + HGI48_RS03145 0.76 -0.5 667,281 + HGI48_RS03145 0.76 -0.5 667,282 - HGI48_RS03145 0.77 -0.3 667,282 - HGI48_RS03145 0.77 -1.7 667,282 - HGI48_RS03145 0.77 -1.9 667,282 - HGI48_RS03145 0.77 +0.4 667,369 + +1.5 667,370 - -1.3 667,370 - +0.9
Or see this region's nucleotide sequence