Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03080 and HGI48_RS03085 overlap by 4 nucleotides HGI48_RS03085 and HGI48_RS03090 overlap by 4 nucleotides
HGI48_RS03080: HGI48_RS03080 - phage tail tape measure protein, at 653,478 to 656,318
_RS03080
HGI48_RS03085: HGI48_RS03085 - phage tail protein, at 656,315 to 656,848
_RS03085
HGI48_RS03090: HGI48_RS03090 - phage late control D family protein, at 656,845 to 657,954
_RS03090
Position (kb) 656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 655.505 kb on - strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand at 655.568 kb on + strand, within HGI48_RS03080 at 655.568 kb on + strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.569 kb on - strand, within HGI48_RS03080 at 655.900 kb on - strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.920 kb on + strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 655.921 kb on - strand, within HGI48_RS03080 at 656.003 kb on + strand, within HGI48_RS03080 at 656.112 kb on + strand at 656.113 kb on - strand at 656.165 kb on + strand at 656.165 kb on + strand at 656.165 kb on + strand at 656.165 kb on + strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.166 kb on - strand at 656.183 kb on + strand at 656.183 kb on + strand at 656.184 kb on - strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.323 kb on + strand at 656.324 kb on - strand at 656.326 kb on + strand at 656.326 kb on + strand at 656.327 kb on - strand at 656.327 kb on - strand at 656.368 kb on - strand at 656.413 kb on + strand, within HGI48_RS03085 at 656.414 kb on - strand, within HGI48_RS03085 at 656.432 kb on - strand, within HGI48_RS03085 at 656.610 kb on - strand, within HGI48_RS03085 at 656.618 kb on + strand at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.618 kb on + strand, within HGI48_RS03085 at 656.619 kb on - strand at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.619 kb on - strand, within HGI48_RS03085 at 656.700 kb on + strand, within HGI48_RS03085 at 656.700 kb on + strand, within HGI48_RS03085 at 656.700 kb on + strand, within HGI48_RS03085 at 656.701 kb on - strand, within HGI48_RS03085 at 656.701 kb on - strand, within HGI48_RS03085 at 656.701 kb on - strand, within HGI48_RS03085 at 656.701 kb on - strand at 656.710 kb on - strand at 656.967 kb on + strand, within HGI48_RS03090 at 656.999 kb on + strand, within HGI48_RS03090 at 657.000 kb on - strand, within HGI48_RS03090 at 657.000 kb on - strand, within HGI48_RS03090 at 657.055 kb on - strand at 657.079 kb on + strand, within HGI48_RS03090 at 657.080 kb on - strand, within HGI48_RS03090 at 657.310 kb on - strand, within HGI48_RS03090 at 657.310 kb on - strand, within HGI48_RS03090 at 657.310 kb on - strand, within HGI48_RS03090 at 657.401 kb on + strand, within HGI48_RS03090 at 657.401 kb on + strand, within HGI48_RS03090 at 657.401 kb on + strand, within HGI48_RS03090 at 657.459 kb on + strand, within HGI48_RS03090 at 657.459 kb on + strand, within HGI48_RS03090 at 657.460 kb on - strand, within HGI48_RS03090 at 657.460 kb on - strand, within HGI48_RS03090 at 657.493 kb on - strand, within HGI48_RS03090 at 657.498 kb on - strand, within HGI48_RS03090 at 657.515 kb on - strand, within HGI48_RS03090 at 657.515 kb on - strand, within HGI48_RS03090 at 657.532 kb on - strand, within HGI48_RS03090 at 657.532 kb on - strand, within HGI48_RS03090 at 657.574 kb on - strand, within HGI48_RS03090 at 657.649 kb on + strand, within HGI48_RS03090 at 657.649 kb on + strand, within HGI48_RS03090 at 657.650 kb on - strand, within HGI48_RS03090 at 657.680 kb on + strand, within HGI48_RS03090 at 657.681 kb on - strand at 657.694 kb on + strand, within HGI48_RS03090 at 657.695 kb on - strand at 657.695 kb on - strand, within HGI48_RS03090 at 657.702 kb on + strand, within HGI48_RS03090 at 657.726 kb on + strand, within HGI48_RS03090 at 657.726 kb on + strand, within HGI48_RS03090 at 657.727 kb on - strand, within HGI48_RS03090 at 657.727 kb on - strand, within HGI48_RS03090 at 657.727 kb on - strand, within HGI48_RS03090 at 657.813 kb on - strand, within HGI48_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 655,505 - HGI48_RS03080 0.71 -0.9 655,568 + HGI48_RS03080 0.74 +0.7 655,568 + HGI48_RS03080 0.74 -2.9 655,568 + HGI48_RS03080 0.74 +1.2 655,568 + HGI48_RS03080 0.74 +0.4 655,568 + HGI48_RS03080 0.74 -0.6 655,568 + +0.1 655,568 + HGI48_RS03080 0.74 -1.1 655,568 + HGI48_RS03080 0.74 -0.3 655,569 - HGI48_RS03080 0.74 -0.5 655,569 - HGI48_RS03080 0.74 +0.2 655,569 - HGI48_RS03080 0.74 -1.9 655,569 - HGI48_RS03080 0.74 +0.7 655,569 - HGI48_RS03080 0.74 -0.9 655,569 - HGI48_RS03080 0.74 +0.9 655,569 - HGI48_RS03080 0.74 +0.0 655,569 - HGI48_RS03080 0.74 +0.0 655,569 - HGI48_RS03080 0.74 +1.3 655,569 - HGI48_RS03080 0.74 -0.7 655,569 - HGI48_RS03080 0.74 -0.3 655,900 - HGI48_RS03080 0.85 -0.5 655,920 + HGI48_RS03080 0.86 -0.1 655,920 + HGI48_RS03080 0.86 -0.0 655,920 + HGI48_RS03080 0.86 +1.2 655,920 + HGI48_RS03080 0.86 -0.7 655,920 + HGI48_RS03080 0.86 -0.1 655,920 + HGI48_RS03080 0.86 -0.1 655,920 + HGI48_RS03080 0.86 -0.2 655,920 + HGI48_RS03080 0.86 -0.7 655,920 + HGI48_RS03080 0.86 -0.1 655,920 + HGI48_RS03080 0.86 -0.2 655,920 + HGI48_RS03080 0.86 -0.5 655,921 - HGI48_RS03080 0.86 +0.4 655,921 - HGI48_RS03080 0.86 -0.9 655,921 - HGI48_RS03080 0.86 +1.0 655,921 - HGI48_RS03080 0.86 +1.2 655,921 - -0.9 655,921 - HGI48_RS03080 0.86 +0.7 655,921 - HGI48_RS03080 0.86 +0.1 655,921 - HGI48_RS03080 0.86 +0.7 655,921 - HGI48_RS03080 0.86 -0.1 655,921 - HGI48_RS03080 0.86 -2.5 655,921 - HGI48_RS03080 0.86 +0.7 655,921 - HGI48_RS03080 0.86 -0.6 655,921 - HGI48_RS03080 0.86 +0.1 656,003 + HGI48_RS03080 0.89 +1.5 656,112 + -1.3 656,113 - +1.4 656,165 + +0.7 656,165 + -2.1 656,165 + +1.3 656,165 + -0.3 656,166 - +0.7 656,166 - +0.4 656,166 - -0.4 656,166 - +0.0 656,166 - +2.3 656,183 + -0.3 656,183 + -1.1 656,184 - +0.3 656,323 + +0.7 656,323 + +0.7 656,323 + -0.7 656,323 + +0.1 656,323 + -0.6 656,324 - -0.5 656,326 + +1.0 656,326 + -0.2 656,327 - +1.3 656,327 - +0.1 656,368 - -1.1 656,413 + HGI48_RS03085 0.18 +0.8 656,414 - HGI48_RS03085 0.19 +1.8 656,432 - HGI48_RS03085 0.22 -0.2 656,610 - HGI48_RS03085 0.55 +0.1 656,618 + +1.1 656,618 + HGI48_RS03085 0.57 +0.1 656,618 + HGI48_RS03085 0.57 +0.3 656,618 + +1.3 656,618 + HGI48_RS03085 0.57 +0.1 656,618 + HGI48_RS03085 0.57 +0.0 656,618 + HGI48_RS03085 0.57 -0.8 656,618 + -0.9 656,618 + HGI48_RS03085 0.57 +0.4 656,618 + HGI48_RS03085 0.57 -1.9 656,618 + HGI48_RS03085 0.57 -0.3 656,618 + HGI48_RS03085 0.57 -0.4 656,618 + HGI48_RS03085 0.57 -0.3 656,618 + HGI48_RS03085 0.57 +0.7 656,618 + HGI48_RS03085 0.57 +1.0 656,618 + HGI48_RS03085 0.57 -0.3 656,618 + HGI48_RS03085 0.57 -0.2 656,618 + HGI48_RS03085 0.57 -0.6 656,618 + HGI48_RS03085 0.57 +0.3 656,618 + HGI48_RS03085 0.57 -0.7 656,618 + HGI48_RS03085 0.57 -1.3 656,618 + HGI48_RS03085 0.57 +0.6 656,618 + HGI48_RS03085 0.57 -0.3 656,619 - +1.3 656,619 - HGI48_RS03085 0.57 -1.0 656,619 - HGI48_RS03085 0.57 -0.3 656,619 - HGI48_RS03085 0.57 +0.8 656,619 - HGI48_RS03085 0.57 -0.7 656,619 - HGI48_RS03085 0.57 -0.5 656,619 - HGI48_RS03085 0.57 +0.9 656,619 - HGI48_RS03085 0.57 -0.1 656,619 - HGI48_RS03085 0.57 -0.3 656,619 - HGI48_RS03085 0.57 -0.3 656,619 - HGI48_RS03085 0.57 -0.1 656,619 - HGI48_RS03085 0.57 -0.2 656,619 - HGI48_RS03085 0.57 -0.3 656,619 - HGI48_RS03085 0.57 -0.9 656,619 - HGI48_RS03085 0.57 -0.2 656,619 - HGI48_RS03085 0.57 -0.3 656,619 - HGI48_RS03085 0.57 +0.3 656,700 + HGI48_RS03085 0.72 +0.3 656,700 + HGI48_RS03085 0.72 +0.9 656,700 + HGI48_RS03085 0.72 +1.2 656,701 - HGI48_RS03085 0.72 -1.8 656,701 - HGI48_RS03085 0.72 -1.9 656,701 - HGI48_RS03085 0.72 -1.6 656,701 - +1.1 656,710 - +1.4 656,967 + HGI48_RS03090 0.11 -0.1 656,999 + HGI48_RS03090 0.14 +1.4 657,000 - HGI48_RS03090 0.14 -0.1 657,000 - HGI48_RS03090 0.14 -1.9 657,055 - +0.7 657,079 + HGI48_RS03090 0.21 +0.3 657,080 - HGI48_RS03090 0.21 +1.8 657,310 - HGI48_RS03090 0.42 +0.2 657,310 - HGI48_RS03090 0.42 -0.6 657,310 - HGI48_RS03090 0.42 +0.7 657,401 + HGI48_RS03090 0.50 +0.9 657,401 + HGI48_RS03090 0.50 -0.1 657,401 + HGI48_RS03090 0.50 +0.1 657,459 + HGI48_RS03090 0.55 +0.4 657,459 + HGI48_RS03090 0.55 +0.4 657,460 - HGI48_RS03090 0.55 -0.7 657,460 - HGI48_RS03090 0.55 +0.3 657,493 - HGI48_RS03090 0.58 -1.1 657,498 - HGI48_RS03090 0.59 -0.2 657,515 - HGI48_RS03090 0.60 +0.9 657,515 - HGI48_RS03090 0.60 -0.6 657,532 - HGI48_RS03090 0.62 -0.3 657,532 - HGI48_RS03090 0.62 +0.4 657,574 - HGI48_RS03090 0.66 +1.3 657,649 + HGI48_RS03090 0.72 +1.0 657,649 + HGI48_RS03090 0.72 -0.6 657,650 - HGI48_RS03090 0.73 +0.5 657,680 + HGI48_RS03090 0.75 +0.3 657,681 - +1.1 657,694 + HGI48_RS03090 0.76 -0.5 657,695 - +1.7 657,695 - HGI48_RS03090 0.77 +0.5 657,702 + HGI48_RS03090 0.77 +0.5 657,726 + HGI48_RS03090 0.79 +0.4 657,726 + HGI48_RS03090 0.79 -0.1 657,727 - HGI48_RS03090 0.79 -1.1 657,727 - HGI48_RS03090 0.79 +0.7 657,727 - HGI48_RS03090 0.79 -0.6 657,813 - HGI48_RS03090 0.87 +1.5
Or see this region's nucleotide sequence