Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02895 and HGI48_RS02900 are separated by 134 nucleotides HGI48_RS02900 and HGI48_RS02905 overlap by 8 nucleotides HGI48_RS02905 and HGI48_RS02910 are separated by 197 nucleotides HGI48_RS02910 and HGI48_RS02915 are separated by 68 nucleotides HGI48_RS02915 and HGI48_RS02920 overlap by 1 nucleotides
HGI48_RS02895: HGI48_RS02895 - phage repressor protein CI, at 627,203 to 627,787
_RS02895
HGI48_RS02900: HGI48_RS02900 - hypothetical protein, at 627,922 to 628,221
_RS02900
HGI48_RS02905: HGI48_RS02905 - phage regulatory CII family protein, at 628,214 to 628,717
_RS02905
HGI48_RS02910: HGI48_RS02910 - DUF5347 family protein, at 628,915 to 629,238
_RS02910
HGI48_RS02915: HGI48_RS02915 - DUF2732 domain-containing protein, at 629,307 to 629,534
_RS02915
HGI48_RS02920: HGI48_RS02920 - TraR/DksA family transcriptional regulator, at 629,534 to 629,761
_RS02920
Position (kb) 628
629 Strain fitness (log2 ratio) -2
-1
0
1
2 at 627.893 kb on - strand at 627.897 kb on - strand at 627.897 kb on - strand at 627.897 kb on - strand at 627.897 kb on - strand at 627.909 kb on - strand at 627.941 kb on + strand at 627.942 kb on - strand at 627.945 kb on + strand at 627.945 kb on + strand at 627.946 kb on - strand at 628.046 kb on + strand, within HGI48_RS02900 at 628.046 kb on + strand, within HGI48_RS02900 at 628.046 kb on + strand, within HGI48_RS02900 at 628.047 kb on - strand, within HGI48_RS02900 at 628.047 kb on - strand, within HGI48_RS02900 at 628.050 kb on + strand, within HGI48_RS02900 at 628.109 kb on - strand, within HGI48_RS02900 at 628.111 kb on + strand, within HGI48_RS02900 at 628.111 kb on + strand, within HGI48_RS02900 at 628.112 kb on - strand, within HGI48_RS02900 at 628.120 kb on + strand, within HGI48_RS02900 at 628.447 kb on + strand, within HGI48_RS02905 at 628.448 kb on - strand, within HGI48_RS02905 at 628.496 kb on + strand at 628.496 kb on + strand, within HGI48_RS02905 at 628.496 kb on + strand, within HGI48_RS02905 at 628.497 kb on - strand, within HGI48_RS02905 at 628.504 kb on - strand, within HGI48_RS02905 at 628.651 kb on - strand, within HGI48_RS02905 at 628.892 kb on - strand at 629.052 kb on - strand at 629.098 kb on - strand, within HGI48_RS02910 at 629.307 kb on - strand at 629.307 kb on - strand at 629.307 kb on - strand at 629.591 kb on - strand, within HGI48_RS02920
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 627,893 - +0.7 627,897 - +1.1 627,897 - +1.3 627,897 - -0.9 627,897 - -0.9 627,909 - +0.4 627,941 + -1.0 627,942 - +1.0 627,945 + -0.3 627,945 + +1.1 627,946 - -0.1 628,046 + HGI48_RS02900 0.41 +2.4 628,046 + HGI48_RS02900 0.41 -0.9 628,046 + HGI48_RS02900 0.41 +1.4 628,047 - HGI48_RS02900 0.42 +1.1 628,047 - HGI48_RS02900 0.42 -0.3 628,050 + HGI48_RS02900 0.43 +0.2 628,109 - HGI48_RS02900 0.62 -0.3 628,111 + HGI48_RS02900 0.63 -1.3 628,111 + HGI48_RS02900 0.63 -0.7 628,112 - HGI48_RS02900 0.63 -1.3 628,120 + HGI48_RS02900 0.66 -1.1 628,447 + HGI48_RS02905 0.46 -1.5 628,448 - HGI48_RS02905 0.46 +0.6 628,496 + -0.3 628,496 + HGI48_RS02905 0.56 -1.1 628,496 + HGI48_RS02905 0.56 -2.1 628,497 - HGI48_RS02905 0.56 +0.7 628,504 - HGI48_RS02905 0.58 +2.0 628,651 - HGI48_RS02905 0.87 +1.1 628,892 - -0.6 629,052 - +0.1 629,098 - HGI48_RS02910 0.56 +0.7 629,307 - -1.3 629,307 - +0.9 629,307 - +0.4 629,591 - HGI48_RS02920 0.25 +0.2
Or see this region's nucleotide sequence