Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02760 and HGI48_RS02765 are separated by 277 nucleotides HGI48_RS02765 and HGI48_RS02770 overlap by 4 nucleotides HGI48_RS02770 and HGI48_RS02775 are separated by 3 nucleotides HGI48_RS02775 and HGI48_RS02780 are separated by 183 nucleotides HGI48_RS02780 and HGI48_RS02785 are separated by 3 nucleotides
HGI48_RS02760: HGI48_RS02760 - DoxX family protein, at 595,970 to 596,365
_RS02760
HGI48_RS02765: HGI48_RS02765 - YqjK-like family protein, at 596,643 to 596,948
_RS02765
HGI48_RS02770: HGI48_RS02770 - phage holin family protein, at 596,945 to 597,343
_RS02770
HGI48_RS02775: HGI48_RS02775 - DUF883 domain-containing protein, at 597,347 to 597,652
_RS02775
HGI48_RS02780: HGI48_RS02780 - EnvZ/OmpR regulon moderator MzrA, at 597,836 to 598,183
_RS02780
HGI48_RS02785: HGI48_RS02785 - DedA family protein, at 598,187 to 598,861
_RS02785
Position (kb) 597
598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 596.379 kb on + strand at 596.379 kb on + strand at 596.434 kb on + strand at 596.445 kb on + strand at 596.446 kb on - strand at 596.463 kb on + strand at 596.464 kb on - strand at 596.466 kb on + strand at 596.467 kb on - strand at 596.510 kb on + strand at 596.541 kb on + strand at 596.542 kb on - strand at 596.544 kb on + strand at 596.545 kb on - strand at 596.572 kb on - strand at 596.595 kb on + strand at 596.596 kb on - strand at 596.673 kb on + strand at 596.674 kb on - strand, within HGI48_RS02765 at 596.685 kb on + strand, within HGI48_RS02765 at 596.754 kb on + strand, within HGI48_RS02765 at 596.755 kb on - strand, within HGI48_RS02765 at 597.104 kb on + strand, within HGI48_RS02770 at 597.105 kb on - strand, within HGI48_RS02770 at 597.234 kb on - strand, within HGI48_RS02770 at 597.234 kb on - strand, within HGI48_RS02770 at 597.234 kb on - strand, within HGI48_RS02770 at 597.283 kb on + strand, within HGI48_RS02770 at 597.283 kb on + strand, within HGI48_RS02770 at 597.283 kb on + strand, within HGI48_RS02770 at 597.283 kb on + strand, within HGI48_RS02770 at 597.284 kb on - strand, within HGI48_RS02770 at 597.284 kb on - strand, within HGI48_RS02770 at 597.290 kb on + strand, within HGI48_RS02770 at 597.290 kb on + strand, within HGI48_RS02770 at 597.291 kb on - strand, within HGI48_RS02770 at 597.291 kb on - strand at 597.348 kb on + strand at 597.470 kb on - strand, within HGI48_RS02775 at 597.562 kb on + strand, within HGI48_RS02775 at 597.562 kb on + strand, within HGI48_RS02775 at 597.579 kb on - strand, within HGI48_RS02775 at 597.666 kb on + strand at 597.667 kb on - strand at 597.667 kb on - strand at 597.667 kb on - strand at 597.687 kb on - strand at 597.690 kb on + strand at 597.691 kb on - strand at 597.691 kb on - strand at 597.692 kb on + strand at 597.829 kb on - strand at 598.020 kb on + strand, within HGI48_RS02780 at 598.021 kb on - strand, within HGI48_RS02780 at 598.024 kb on + strand, within HGI48_RS02780 at 598.024 kb on + strand, within HGI48_RS02780 at 598.024 kb on + strand, within HGI48_RS02780 at 598.024 kb on + strand, within HGI48_RS02780 at 598.024 kb on + strand at 598.025 kb on - strand, within HGI48_RS02780 at 598.025 kb on - strand, within HGI48_RS02780 at 598.026 kb on + strand, within HGI48_RS02780 at 598.026 kb on + strand, within HGI48_RS02780 at 598.026 kb on + strand, within HGI48_RS02780 at 598.026 kb on + strand, within HGI48_RS02780 at 598.026 kb on + strand, within HGI48_RS02780 at 598.026 kb on + strand at 598.027 kb on - strand, within HGI48_RS02780 at 598.027 kb on - strand, within HGI48_RS02780 at 598.027 kb on - strand, within HGI48_RS02780 at 598.027 kb on - strand, within HGI48_RS02780 at 598.027 kb on - strand, within HGI48_RS02780 at 598.027 kb on - strand, within HGI48_RS02780 at 598.027 kb on - strand, within HGI48_RS02780 at 598.027 kb on - strand, within HGI48_RS02780 at 598.027 kb on - strand, within HGI48_RS02780 at 598.027 kb on - strand, within HGI48_RS02780 at 598.067 kb on - strand, within HGI48_RS02780 at 598.108 kb on + strand, within HGI48_RS02780 at 598.108 kb on + strand, within HGI48_RS02780 at 598.108 kb on + strand at 598.108 kb on + strand, within HGI48_RS02780 at 598.108 kb on + strand, within HGI48_RS02780 at 598.108 kb on + strand, within HGI48_RS02780 at 598.108 kb on + strand, within HGI48_RS02780 at 598.108 kb on + strand, within HGI48_RS02780 at 598.108 kb on + strand, within HGI48_RS02780 at 598.109 kb on - strand at 598.109 kb on - strand, within HGI48_RS02780 at 598.109 kb on - strand at 598.109 kb on - strand, within HGI48_RS02780 at 598.109 kb on - strand, within HGI48_RS02780 at 598.109 kb on - strand at 598.109 kb on - strand, within HGI48_RS02780 at 598.109 kb on - strand, within HGI48_RS02780 at 598.109 kb on - strand, within HGI48_RS02780 at 598.109 kb on - strand, within HGI48_RS02780 at 598.112 kb on + strand, within HGI48_RS02780 at 598.112 kb on + strand, within HGI48_RS02780 at 598.112 kb on + strand at 598.112 kb on + strand, within HGI48_RS02780 at 598.112 kb on + strand, within HGI48_RS02780 at 598.113 kb on - strand, within HGI48_RS02780 at 598.147 kb on - strand at 598.311 kb on + strand, within HGI48_RS02785 at 598.311 kb on + strand, within HGI48_RS02785 at 598.533 kb on + strand, within HGI48_RS02785 at 598.534 kb on - strand, within HGI48_RS02785 at 598.534 kb on - strand at 598.576 kb on + strand, within HGI48_RS02785 at 598.602 kb on + strand, within HGI48_RS02785 at 598.602 kb on + strand, within HGI48_RS02785 at 598.603 kb on - strand at 598.603 kb on - strand, within HGI48_RS02785 at 598.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 596,379 + -0.1 596,379 + -0.2 596,434 + +0.5 596,445 + +0.1 596,446 - +1.5 596,463 + +0.7 596,464 - -0.7 596,466 + -0.6 596,467 - +1.0 596,510 + -1.9 596,541 + +1.1 596,542 - +1.7 596,544 + -0.0 596,545 - +0.3 596,572 - +0.7 596,595 + +0.9 596,596 - -0.5 596,673 + -0.8 596,674 - HGI48_RS02765 0.10 -1.0 596,685 + HGI48_RS02765 0.14 -1.0 596,754 + HGI48_RS02765 0.36 -1.0 596,755 - HGI48_RS02765 0.37 -1.6 597,104 + HGI48_RS02770 0.40 -0.3 597,105 - HGI48_RS02770 0.40 +0.1 597,234 - HGI48_RS02770 0.72 -1.9 597,234 - HGI48_RS02770 0.72 +0.3 597,234 - HGI48_RS02770 0.72 -0.9 597,283 + HGI48_RS02770 0.85 -1.2 597,283 + HGI48_RS02770 0.85 -0.3 597,283 + HGI48_RS02770 0.85 -0.5 597,283 + HGI48_RS02770 0.85 +0.2 597,284 - HGI48_RS02770 0.85 -0.2 597,284 - HGI48_RS02770 0.85 -0.2 597,290 + HGI48_RS02770 0.86 +1.0 597,290 + HGI48_RS02770 0.86 +1.1 597,291 - HGI48_RS02770 0.87 -0.1 597,291 - +1.7 597,348 + +0.1 597,470 - HGI48_RS02775 0.40 +1.3 597,562 + HGI48_RS02775 0.70 +1.3 597,562 + HGI48_RS02775 0.70 +0.2 597,579 - HGI48_RS02775 0.76 -1.6 597,666 + +0.1 597,667 - +0.3 597,667 - -0.4 597,667 - -1.3 597,687 - -0.1 597,690 + +0.6 597,691 - +0.2 597,691 - -0.3 597,692 + -1.6 597,829 - +0.1 598,020 + HGI48_RS02780 0.53 -0.3 598,021 - HGI48_RS02780 0.53 -0.7 598,024 + HGI48_RS02780 0.54 +1.2 598,024 + HGI48_RS02780 0.54 -0.7 598,024 + HGI48_RS02780 0.54 -0.6 598,024 + HGI48_RS02780 0.54 -0.5 598,024 + +0.7 598,025 - HGI48_RS02780 0.54 -0.3 598,025 - HGI48_RS02780 0.54 +0.4 598,026 + HGI48_RS02780 0.55 -0.0 598,026 + HGI48_RS02780 0.55 +0.7 598,026 + HGI48_RS02780 0.55 -2.1 598,026 + HGI48_RS02780 0.55 -0.1 598,026 + HGI48_RS02780 0.55 -2.5 598,026 + -0.3 598,027 - HGI48_RS02780 0.55 +0.3 598,027 - HGI48_RS02780 0.55 +0.2 598,027 - HGI48_RS02780 0.55 -1.3 598,027 - HGI48_RS02780 0.55 +1.0 598,027 - HGI48_RS02780 0.55 +0.3 598,027 - HGI48_RS02780 0.55 +0.4 598,027 - HGI48_RS02780 0.55 -0.7 598,027 - HGI48_RS02780 0.55 -0.9 598,027 - HGI48_RS02780 0.55 -1.6 598,027 - HGI48_RS02780 0.55 +0.1 598,067 - HGI48_RS02780 0.66 +1.7 598,108 + HGI48_RS02780 0.78 +1.0 598,108 + HGI48_RS02780 0.78 -0.9 598,108 + -0.9 598,108 + HGI48_RS02780 0.78 -0.5 598,108 + HGI48_RS02780 0.78 -0.9 598,108 + HGI48_RS02780 0.78 +0.4 598,108 + HGI48_RS02780 0.78 +0.7 598,108 + HGI48_RS02780 0.78 -0.8 598,108 + HGI48_RS02780 0.78 +0.6 598,109 - -0.9 598,109 - HGI48_RS02780 0.78 -0.6 598,109 - +2.0 598,109 - HGI48_RS02780 0.78 +0.1 598,109 - HGI48_RS02780 0.78 -1.3 598,109 - -0.9 598,109 - HGI48_RS02780 0.78 +0.1 598,109 - HGI48_RS02780 0.78 -0.3 598,109 - HGI48_RS02780 0.78 -0.4 598,109 - HGI48_RS02780 0.78 -1.0 598,112 + HGI48_RS02780 0.79 -0.7 598,112 + HGI48_RS02780 0.79 +0.6 598,112 + +1.7 598,112 + HGI48_RS02780 0.79 -1.1 598,112 + HGI48_RS02780 0.79 +0.7 598,113 - HGI48_RS02780 0.80 -2.0 598,147 - +1.4 598,311 + HGI48_RS02785 0.18 +0.3 598,311 + HGI48_RS02785 0.18 -1.6 598,533 + HGI48_RS02785 0.51 +1.0 598,534 - HGI48_RS02785 0.51 +0.3 598,534 - -0.9 598,576 + HGI48_RS02785 0.58 +1.0 598,602 + HGI48_RS02785 0.61 -0.3 598,602 + HGI48_RS02785 0.61 -0.9 598,603 - +1.1 598,603 - HGI48_RS02785 0.62 -0.6 598,607 - +1.9
Or see this region's nucleotide sequence