Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02775

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02760 and HGI48_RS02765 are separated by 277 nucleotidesHGI48_RS02765 and HGI48_RS02770 overlap by 4 nucleotidesHGI48_RS02770 and HGI48_RS02775 are separated by 3 nucleotidesHGI48_RS02775 and HGI48_RS02780 are separated by 183 nucleotidesHGI48_RS02780 and HGI48_RS02785 are separated by 3 nucleotides HGI48_RS02760: HGI48_RS02760 - DoxX family protein, at 595,970 to 596,365 _RS02760 HGI48_RS02765: HGI48_RS02765 - YqjK-like family protein, at 596,643 to 596,948 _RS02765 HGI48_RS02770: HGI48_RS02770 - phage holin family protein, at 596,945 to 597,343 _RS02770 HGI48_RS02775: HGI48_RS02775 - DUF883 domain-containing protein, at 597,347 to 597,652 _RS02775 HGI48_RS02780: HGI48_RS02780 - EnvZ/OmpR regulon moderator MzrA, at 597,836 to 598,183 _RS02780 HGI48_RS02785: HGI48_RS02785 - DedA family protein, at 598,187 to 598,861 _RS02785 Position (kb) 597 598Strain fitness (log2 ratio) -2 -1 0 1 2at 596.379 kb on + strandat 596.379 kb on + strandat 596.434 kb on + strandat 596.445 kb on + strandat 596.446 kb on - strandat 596.463 kb on + strandat 596.464 kb on - strandat 596.466 kb on + strandat 596.467 kb on - strandat 596.510 kb on + strandat 596.541 kb on + strandat 596.542 kb on - strandat 596.544 kb on + strandat 596.545 kb on - strandat 596.572 kb on - strandat 596.595 kb on + strandat 596.596 kb on - strandat 596.673 kb on + strandat 596.674 kb on - strand, within HGI48_RS02765at 596.685 kb on + strand, within HGI48_RS02765at 596.754 kb on + strand, within HGI48_RS02765at 596.755 kb on - strand, within HGI48_RS02765at 597.104 kb on + strand, within HGI48_RS02770at 597.105 kb on - strand, within HGI48_RS02770at 597.234 kb on - strand, within HGI48_RS02770at 597.234 kb on - strand, within HGI48_RS02770at 597.234 kb on - strand, within HGI48_RS02770at 597.283 kb on + strand, within HGI48_RS02770at 597.283 kb on + strand, within HGI48_RS02770at 597.283 kb on + strand, within HGI48_RS02770at 597.283 kb on + strand, within HGI48_RS02770at 597.284 kb on - strand, within HGI48_RS02770at 597.284 kb on - strand, within HGI48_RS02770at 597.290 kb on + strand, within HGI48_RS02770at 597.290 kb on + strand, within HGI48_RS02770at 597.291 kb on - strand, within HGI48_RS02770at 597.291 kb on - strandat 597.348 kb on + strandat 597.470 kb on - strand, within HGI48_RS02775at 597.562 kb on + strand, within HGI48_RS02775at 597.562 kb on + strand, within HGI48_RS02775at 597.579 kb on - strand, within HGI48_RS02775at 597.666 kb on + strandat 597.667 kb on - strandat 597.667 kb on - strandat 597.667 kb on - strandat 597.687 kb on - strandat 597.690 kb on + strandat 597.691 kb on - strandat 597.691 kb on - strandat 597.692 kb on + strandat 597.829 kb on - strandat 598.020 kb on + strand, within HGI48_RS02780at 598.021 kb on - strand, within HGI48_RS02780at 598.024 kb on + strand, within HGI48_RS02780at 598.024 kb on + strand, within HGI48_RS02780at 598.024 kb on + strand, within HGI48_RS02780at 598.024 kb on + strand, within HGI48_RS02780at 598.024 kb on + strandat 598.025 kb on - strand, within HGI48_RS02780at 598.025 kb on - strand, within HGI48_RS02780at 598.026 kb on + strand, within HGI48_RS02780at 598.026 kb on + strand, within HGI48_RS02780at 598.026 kb on + strand, within HGI48_RS02780at 598.026 kb on + strand, within HGI48_RS02780at 598.026 kb on + strand, within HGI48_RS02780at 598.026 kb on + strandat 598.027 kb on - strand, within HGI48_RS02780at 598.027 kb on - strand, within HGI48_RS02780at 598.027 kb on - strand, within HGI48_RS02780at 598.027 kb on - strand, within HGI48_RS02780at 598.027 kb on - strand, within HGI48_RS02780at 598.027 kb on - strand, within HGI48_RS02780at 598.027 kb on - strand, within HGI48_RS02780at 598.027 kb on - strand, within HGI48_RS02780at 598.027 kb on - strand, within HGI48_RS02780at 598.027 kb on - strand, within HGI48_RS02780at 598.067 kb on - strand, within HGI48_RS02780at 598.108 kb on + strand, within HGI48_RS02780at 598.108 kb on + strand, within HGI48_RS02780at 598.108 kb on + strandat 598.108 kb on + strand, within HGI48_RS02780at 598.108 kb on + strand, within HGI48_RS02780at 598.108 kb on + strand, within HGI48_RS02780at 598.108 kb on + strand, within HGI48_RS02780at 598.108 kb on + strand, within HGI48_RS02780at 598.108 kb on + strand, within HGI48_RS02780at 598.109 kb on - strandat 598.109 kb on - strand, within HGI48_RS02780at 598.109 kb on - strandat 598.109 kb on - strand, within HGI48_RS02780at 598.109 kb on - strand, within HGI48_RS02780at 598.109 kb on - strandat 598.109 kb on - strand, within HGI48_RS02780at 598.109 kb on - strand, within HGI48_RS02780at 598.109 kb on - strand, within HGI48_RS02780at 598.109 kb on - strand, within HGI48_RS02780at 598.112 kb on + strand, within HGI48_RS02780at 598.112 kb on + strand, within HGI48_RS02780at 598.112 kb on + strandat 598.112 kb on + strand, within HGI48_RS02780at 598.112 kb on + strand, within HGI48_RS02780at 598.113 kb on - strand, within HGI48_RS02780at 598.147 kb on - strandat 598.311 kb on + strand, within HGI48_RS02785at 598.311 kb on + strand, within HGI48_RS02785at 598.533 kb on + strand, within HGI48_RS02785at 598.534 kb on - strand, within HGI48_RS02785at 598.534 kb on - strandat 598.576 kb on + strand, within HGI48_RS02785at 598.602 kb on + strand, within HGI48_RS02785at 598.602 kb on + strand, within HGI48_RS02785at 598.603 kb on - strandat 598.603 kb on - strand, within HGI48_RS02785at 598.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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596,379 + -0.1
596,379 + -0.2
596,434 + +0.5
596,445 + +0.1
596,446 - +1.5
596,463 + +0.7
596,464 - -0.7
596,466 + -0.6
596,467 - +1.0
596,510 + -1.9
596,541 + +1.1
596,542 - +1.7
596,544 + -0.0
596,545 - +0.3
596,572 - +0.7
596,595 + +0.9
596,596 - -0.5
596,673 + -0.8
596,674 - HGI48_RS02765 0.10 -1.0
596,685 + HGI48_RS02765 0.14 -1.0
596,754 + HGI48_RS02765 0.36 -1.0
596,755 - HGI48_RS02765 0.37 -1.6
597,104 + HGI48_RS02770 0.40 -0.3
597,105 - HGI48_RS02770 0.40 +0.1
597,234 - HGI48_RS02770 0.72 -1.9
597,234 - HGI48_RS02770 0.72 +0.3
597,234 - HGI48_RS02770 0.72 -0.9
597,283 + HGI48_RS02770 0.85 -1.2
597,283 + HGI48_RS02770 0.85 -0.3
597,283 + HGI48_RS02770 0.85 -0.5
597,283 + HGI48_RS02770 0.85 +0.2
597,284 - HGI48_RS02770 0.85 -0.2
597,284 - HGI48_RS02770 0.85 -0.2
597,290 + HGI48_RS02770 0.86 +1.0
597,290 + HGI48_RS02770 0.86 +1.1
597,291 - HGI48_RS02770 0.87 -0.1
597,291 - +1.7
597,348 + +0.1
597,470 - HGI48_RS02775 0.40 +1.3
597,562 + HGI48_RS02775 0.70 +1.3
597,562 + HGI48_RS02775 0.70 +0.2
597,579 - HGI48_RS02775 0.76 -1.6
597,666 + +0.1
597,667 - +0.3
597,667 - -0.4
597,667 - -1.3
597,687 - -0.1
597,690 + +0.6
597,691 - +0.2
597,691 - -0.3
597,692 + -1.6
597,829 - +0.1
598,020 + HGI48_RS02780 0.53 -0.3
598,021 - HGI48_RS02780 0.53 -0.7
598,024 + HGI48_RS02780 0.54 +1.2
598,024 + HGI48_RS02780 0.54 -0.7
598,024 + HGI48_RS02780 0.54 -0.6
598,024 + HGI48_RS02780 0.54 -0.5
598,024 + +0.7
598,025 - HGI48_RS02780 0.54 -0.3
598,025 - HGI48_RS02780 0.54 +0.4
598,026 + HGI48_RS02780 0.55 -0.0
598,026 + HGI48_RS02780 0.55 +0.7
598,026 + HGI48_RS02780 0.55 -2.1
598,026 + HGI48_RS02780 0.55 -0.1
598,026 + HGI48_RS02780 0.55 -2.5
598,026 + -0.3
598,027 - HGI48_RS02780 0.55 +0.3
598,027 - HGI48_RS02780 0.55 +0.2
598,027 - HGI48_RS02780 0.55 -1.3
598,027 - HGI48_RS02780 0.55 +1.0
598,027 - HGI48_RS02780 0.55 +0.3
598,027 - HGI48_RS02780 0.55 +0.4
598,027 - HGI48_RS02780 0.55 -0.7
598,027 - HGI48_RS02780 0.55 -0.9
598,027 - HGI48_RS02780 0.55 -1.6
598,027 - HGI48_RS02780 0.55 +0.1
598,067 - HGI48_RS02780 0.66 +1.7
598,108 + HGI48_RS02780 0.78 +1.0
598,108 + HGI48_RS02780 0.78 -0.9
598,108 + -0.9
598,108 + HGI48_RS02780 0.78 -0.5
598,108 + HGI48_RS02780 0.78 -0.9
598,108 + HGI48_RS02780 0.78 +0.4
598,108 + HGI48_RS02780 0.78 +0.7
598,108 + HGI48_RS02780 0.78 -0.8
598,108 + HGI48_RS02780 0.78 +0.6
598,109 - -0.9
598,109 - HGI48_RS02780 0.78 -0.6
598,109 - +2.0
598,109 - HGI48_RS02780 0.78 +0.1
598,109 - HGI48_RS02780 0.78 -1.3
598,109 - -0.9
598,109 - HGI48_RS02780 0.78 +0.1
598,109 - HGI48_RS02780 0.78 -0.3
598,109 - HGI48_RS02780 0.78 -0.4
598,109 - HGI48_RS02780 0.78 -1.0
598,112 + HGI48_RS02780 0.79 -0.7
598,112 + HGI48_RS02780 0.79 +0.6
598,112 + +1.7
598,112 + HGI48_RS02780 0.79 -1.1
598,112 + HGI48_RS02780 0.79 +0.7
598,113 - HGI48_RS02780 0.80 -2.0
598,147 - +1.4
598,311 + HGI48_RS02785 0.18 +0.3
598,311 + HGI48_RS02785 0.18 -1.6
598,533 + HGI48_RS02785 0.51 +1.0
598,534 - HGI48_RS02785 0.51 +0.3
598,534 - -0.9
598,576 + HGI48_RS02785 0.58 +1.0
598,602 + HGI48_RS02785 0.61 -0.3
598,602 + HGI48_RS02785 0.61 -0.9
598,603 - +1.1
598,603 - HGI48_RS02785 0.62 -0.6
598,607 - +1.9

Or see this region's nucleotide sequence