Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02695 and HGI48_RS02700 are separated by 444 nucleotides HGI48_RS02700 and HGI48_RS02705 are separated by 187 nucleotides HGI48_RS02705 and HGI48_RS02710 are separated by 50 nucleotides
HGI48_RS02695: HGI48_RS02695 - aspartate ammonia-lyase, at 582,109 to 583,548
_RS02695
HGI48_RS02700: HGI48_RS02700 - FxsA family protein, at 583,993 to 584,496
_RS02700
HGI48_RS02705: HGI48_RS02705 - co-chaperone GroES, at 584,684 to 584,977
_RS02705
HGI48_RS02710: HGI48_RS02710 - chaperonin GroEL, at 585,028 to 586,674
_RS02710
Position (kb) 583
584
585 Strain fitness (log2 ratio) -2
-1
0
1
2 at 583.079 kb on + strand, within HGI48_RS02695 at 583.080 kb on - strand, within HGI48_RS02695 at 583.080 kb on - strand, within HGI48_RS02695 at 583.158 kb on - strand, within HGI48_RS02695 at 583.163 kb on + strand, within HGI48_RS02695 at 583.256 kb on + strand, within HGI48_RS02695 at 583.256 kb on + strand, within HGI48_RS02695 at 583.257 kb on - strand, within HGI48_RS02695 at 583.257 kb on - strand, within HGI48_RS02695 at 583.258 kb on + strand, within HGI48_RS02695 at 583.259 kb on - strand, within HGI48_RS02695 at 583.259 kb on - strand, within HGI48_RS02695 at 583.259 kb on - strand, within HGI48_RS02695 at 583.259 kb on - strand, within HGI48_RS02695 at 583.259 kb on - strand, within HGI48_RS02695 at 583.259 kb on - strand, within HGI48_RS02695 at 583.259 kb on - strand, within HGI48_RS02695 at 583.259 kb on - strand, within HGI48_RS02695 at 583.394 kb on - strand, within HGI48_RS02695 at 583.445 kb on + strand at 583.445 kb on + strand at 583.446 kb on - strand at 583.446 kb on - strand at 583.484 kb on + strand at 583.485 kb on - strand at 583.510 kb on - strand at 583.513 kb on + strand at 583.536 kb on + strand at 583.537 kb on - strand at 583.537 kb on - strand at 583.537 kb on - strand at 583.537 kb on - strand at 583.539 kb on + strand at 583.540 kb on - strand at 583.540 kb on - strand at 583.540 kb on - strand at 583.540 kb on - strand at 583.562 kb on + strand at 583.563 kb on - strand at 583.563 kb on - strand at 583.563 kb on - strand at 583.565 kb on - strand at 583.565 kb on - strand at 583.594 kb on - strand at 583.594 kb on - strand at 583.594 kb on - strand at 583.594 kb on - strand at 583.594 kb on - strand at 583.601 kb on + strand at 583.658 kb on + strand at 583.698 kb on + strand at 583.698 kb on + strand at 583.699 kb on - strand at 583.699 kb on - strand at 583.699 kb on - strand at 583.700 kb on - strand at 583.719 kb on + strand at 583.770 kb on + strand at 583.771 kb on - strand at 583.833 kb on + strand at 583.833 kb on + strand at 583.834 kb on - strand at 583.834 kb on - strand at 583.835 kb on + strand at 583.835 kb on + strand at 583.835 kb on + strand at 583.836 kb on - strand at 583.836 kb on - strand at 583.836 kb on - strand at 583.836 kb on - strand at 583.839 kb on + strand at 583.839 kb on + strand at 583.839 kb on + strand at 583.840 kb on - strand at 583.840 kb on - strand at 583.858 kb on + strand at 583.858 kb on + strand at 583.858 kb on + strand at 583.859 kb on - strand at 583.859 kb on - strand at 583.859 kb on - strand at 583.859 kb on - strand at 583.859 kb on - strand at 583.868 kb on + strand at 583.869 kb on - strand at 583.869 kb on - strand at 583.869 kb on - strand at 583.869 kb on - strand at 583.869 kb on - strand at 583.869 kb on - strand at 583.869 kb on - strand at 583.871 kb on + strand at 583.871 kb on + strand at 583.872 kb on - strand at 583.872 kb on - strand at 583.877 kb on - strand at 583.886 kb on + strand at 583.887 kb on - strand at 583.887 kb on - strand at 583.894 kb on + strand at 583.895 kb on - strand at 583.920 kb on + strand at 583.928 kb on - strand at 583.972 kb on + strand at 583.973 kb on - strand at 584.033 kb on - strand at 584.127 kb on + strand, within HGI48_RS02700 at 584.127 kb on + strand, within HGI48_RS02700 at 584.128 kb on - strand, within HGI48_RS02700 at 584.128 kb on - strand, within HGI48_RS02700 at 584.128 kb on - strand, within HGI48_RS02700 at 584.212 kb on - strand, within HGI48_RS02700 at 584.225 kb on + strand at 584.241 kb on - strand, within HGI48_RS02700 at 584.241 kb on - strand, within HGI48_RS02700 at 584.549 kb on + strand at 584.549 kb on + strand at 584.550 kb on - strand at 584.550 kb on - strand at 584.602 kb on + strand at 584.602 kb on + strand at 584.602 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 583,079 + HGI48_RS02695 0.67 +1.4 583,080 - HGI48_RS02695 0.67 +2.3 583,080 - HGI48_RS02695 0.67 -0.1 583,158 - HGI48_RS02695 0.73 +0.7 583,163 + HGI48_RS02695 0.73 -0.1 583,256 + HGI48_RS02695 0.80 +0.7 583,256 + HGI48_RS02695 0.80 -0.4 583,257 - HGI48_RS02695 0.80 +0.7 583,257 - HGI48_RS02695 0.80 +2.1 583,258 + HGI48_RS02695 0.80 -0.9 583,259 - HGI48_RS02695 0.80 +0.7 583,259 - HGI48_RS02695 0.80 +0.0 583,259 - HGI48_RS02695 0.80 +0.8 583,259 - HGI48_RS02695 0.80 -1.6 583,259 - HGI48_RS02695 0.80 -0.6 583,259 - HGI48_RS02695 0.80 +0.6 583,259 - HGI48_RS02695 0.80 +0.1 583,259 - HGI48_RS02695 0.80 -2.1 583,394 - HGI48_RS02695 0.89 -0.3 583,445 + -0.6 583,445 + -1.5 583,446 - -2.5 583,446 - +0.7 583,484 + -0.3 583,485 - +0.7 583,510 - -0.5 583,513 + -0.2 583,536 + -0.0 583,537 - +0.2 583,537 - +0.7 583,537 - -0.2 583,537 - +1.0 583,539 + -1.0 583,540 - +1.5 583,540 - -0.9 583,540 - -0.4 583,540 - +0.4 583,562 + -0.3 583,563 - +0.2 583,563 - +0.2 583,563 - +0.3 583,565 - -0.9 583,565 - -0.5 583,594 - -0.6 583,594 - +0.3 583,594 - +1.7 583,594 - -0.5 583,594 - +1.0 583,601 + -2.3 583,658 + -1.0 583,698 + +0.7 583,698 + -0.3 583,699 - -0.3 583,699 - +0.2 583,699 - +1.3 583,700 - -1.5 583,719 + -0.0 583,770 + -0.2 583,771 - +1.2 583,833 + +1.7 583,833 + +0.1 583,834 - -0.2 583,834 - -0.9 583,835 + -0.4 583,835 + -1.3 583,835 + -0.5 583,836 - -0.2 583,836 - -1.1 583,836 - -1.9 583,836 - +0.7 583,839 + -2.5 583,839 + +1.2 583,839 + +0.1 583,840 - +0.2 583,840 - -1.4 583,858 + -0.3 583,858 + +0.2 583,858 + -0.8 583,859 - -1.6 583,859 - +1.2 583,859 - +1.2 583,859 - -2.6 583,859 - +0.3 583,868 + -0.0 583,869 - +0.7 583,869 - -1.3 583,869 - -0.7 583,869 - -1.5 583,869 - -0.9 583,869 - +0.1 583,869 - +1.1 583,871 + +0.3 583,871 + +0.1 583,872 - -1.5 583,872 - +0.7 583,877 - -0.1 583,886 + +0.1 583,887 - +0.7 583,887 - -1.1 583,894 + +0.7 583,895 - -1.3 583,920 + -1.5 583,928 - -0.4 583,972 + +1.7 583,973 - -1.0 584,033 - -0.1 584,127 + HGI48_RS02700 0.27 -2.5 584,127 + HGI48_RS02700 0.27 -1.0 584,128 - HGI48_RS02700 0.27 -0.7 584,128 - HGI48_RS02700 0.27 -1.8 584,128 - HGI48_RS02700 0.27 -1.3 584,212 - HGI48_RS02700 0.43 -0.0 584,225 + +0.1 584,241 - HGI48_RS02700 0.49 -0.4 584,241 - HGI48_RS02700 0.49 -2.1 584,549 + -0.5 584,549 + -1.5 584,550 - -0.8 584,550 - -0.3 584,602 + -0.3 584,602 + -0.6 584,602 + -1.0
Or see this region's nucleotide sequence