Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02630 and HGI48_RS02635 are separated by 1 nucleotides HGI48_RS02635 and HGI48_RS02640 are separated by 18 nucleotides HGI48_RS02640 and HGI48_RS02645 are separated by 38 nucleotides
HGI48_RS02630: HGI48_RS02630 - glycosyltransferase family 4 protein, at 570,769 to 571,980
_RS02630
HGI48_RS02635: HGI48_RS02635 - glycosyltransferase family 4 protein, at 571,982 to 573,094
_RS02635
HGI48_RS02640: HGI48_RS02640 - hypothetical protein, at 573,113 to 573,520
_RS02640
HGI48_RS02645: HGI48_RS02645 - DUF4832 domain-containing protein, at 573,559 to 574,953
_RS02645
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 571.000 kb on - strand, within HGI48_RS02630 at 571.014 kb on + strand, within HGI48_RS02630 at 571.071 kb on + strand, within HGI48_RS02630 at 571.071 kb on + strand at 571.075 kb on + strand, within HGI48_RS02630 at 571.076 kb on - strand, within HGI48_RS02630 at 571.076 kb on - strand, within HGI48_RS02630 at 571.150 kb on + strand, within HGI48_RS02630 at 571.150 kb on + strand, within HGI48_RS02630 at 571.150 kb on + strand, within HGI48_RS02630 at 571.171 kb on + strand, within HGI48_RS02630 at 571.172 kb on - strand, within HGI48_RS02630 at 571.223 kb on + strand, within HGI48_RS02630 at 571.227 kb on + strand, within HGI48_RS02630 at 571.227 kb on + strand, within HGI48_RS02630 at 571.227 kb on + strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.228 kb on - strand, within HGI48_RS02630 at 571.236 kb on + strand, within HGI48_RS02630 at 571.237 kb on - strand at 571.237 kb on - strand, within HGI48_RS02630 at 571.240 kb on + strand, within HGI48_RS02630 at 571.240 kb on + strand, within HGI48_RS02630 at 571.305 kb on + strand, within HGI48_RS02630 at 571.305 kb on + strand, within HGI48_RS02630 at 571.305 kb on + strand, within HGI48_RS02630 at 571.306 kb on - strand at 571.318 kb on + strand at 571.370 kb on + strand at 571.371 kb on - strand, within HGI48_RS02630 at 571.395 kb on + strand at 571.459 kb on + strand at 571.470 kb on + strand, within HGI48_RS02630 at 571.471 kb on - strand at 571.653 kb on + strand, within HGI48_RS02630 at 571.688 kb on - strand, within HGI48_RS02630 at 571.691 kb on - strand, within HGI48_RS02630 at 571.696 kb on - strand, within HGI48_RS02630 at 571.790 kb on + strand, within HGI48_RS02630 at 571.790 kb on + strand, within HGI48_RS02630 at 571.887 kb on - strand at 571.922 kb on + strand at 571.923 kb on - strand at 571.923 kb on - strand at 571.923 kb on - strand at 571.923 kb on - strand at 571.927 kb on - strand at 571.927 kb on - strand at 571.943 kb on + strand at 572.062 kb on - strand at 572.075 kb on - strand at 572.120 kb on + strand, within HGI48_RS02635 at 572.125 kb on + strand, within HGI48_RS02635 at 572.126 kb on - strand, within HGI48_RS02635 at 572.202 kb on + strand at 572.202 kb on + strand, within HGI48_RS02635 at 572.203 kb on - strand, within HGI48_RS02635 at 572.227 kb on + strand, within HGI48_RS02635 at 572.227 kb on + strand, within HGI48_RS02635 at 572.228 kb on - strand, within HGI48_RS02635 at 572.269 kb on + strand, within HGI48_RS02635 at 572.305 kb on - strand, within HGI48_RS02635 at 572.327 kb on - strand, within HGI48_RS02635 at 572.345 kb on + strand, within HGI48_RS02635 at 572.346 kb on - strand, within HGI48_RS02635 at 572.414 kb on + strand, within HGI48_RS02635 at 572.471 kb on + strand, within HGI48_RS02635 at 572.471 kb on + strand, within HGI48_RS02635 at 572.494 kb on + strand, within HGI48_RS02635 at 572.494 kb on + strand, within HGI48_RS02635 at 572.495 kb on - strand, within HGI48_RS02635 at 572.495 kb on - strand at 572.498 kb on + strand, within HGI48_RS02635 at 572.498 kb on + strand, within HGI48_RS02635 at 572.498 kb on + strand, within HGI48_RS02635 at 572.498 kb on + strand at 572.499 kb on - strand, within HGI48_RS02635 at 572.500 kb on + strand, within HGI48_RS02635 at 572.582 kb on + strand, within HGI48_RS02635 at 572.582 kb on + strand, within HGI48_RS02635 at 572.582 kb on + strand, within HGI48_RS02635 at 572.582 kb on + strand, within HGI48_RS02635 at 572.583 kb on - strand, within HGI48_RS02635 at 572.583 kb on - strand, within HGI48_RS02635 at 572.583 kb on - strand at 572.587 kb on - strand, within HGI48_RS02635 at 572.587 kb on - strand, within HGI48_RS02635 at 572.587 kb on - strand, within HGI48_RS02635 at 572.587 kb on - strand, within HGI48_RS02635 at 572.587 kb on - strand, within HGI48_RS02635 at 572.705 kb on + strand, within HGI48_RS02635 at 572.707 kb on + strand, within HGI48_RS02635 at 572.707 kb on + strand, within HGI48_RS02635 at 572.707 kb on + strand, within HGI48_RS02635 at 572.707 kb on + strand, within HGI48_RS02635 at 572.708 kb on - strand, within HGI48_RS02635 at 572.708 kb on - strand, within HGI48_RS02635 at 572.782 kb on - strand, within HGI48_RS02635 at 572.782 kb on - strand, within HGI48_RS02635 at 572.782 kb on - strand, within HGI48_RS02635 at 572.803 kb on + strand, within HGI48_RS02635 at 572.804 kb on - strand, within HGI48_RS02635 at 572.809 kb on - strand, within HGI48_RS02635 at 572.809 kb on - strand at 572.809 kb on - strand, within HGI48_RS02635 at 572.809 kb on - strand, within HGI48_RS02635 at 572.809 kb on - strand, within HGI48_RS02635 at 572.825 kb on + strand, within HGI48_RS02635 at 572.825 kb on + strand, within HGI48_RS02635 at 572.825 kb on + strand, within HGI48_RS02635 at 572.826 kb on - strand, within HGI48_RS02635 at 572.893 kb on + strand, within HGI48_RS02635 at 572.894 kb on - strand, within HGI48_RS02635 at 572.894 kb on - strand at 572.933 kb on + strand, within HGI48_RS02635 at 572.934 kb on - strand, within HGI48_RS02635 at 572.934 kb on - strand, within HGI48_RS02635 at 572.938 kb on + strand, within HGI48_RS02635 at 572.938 kb on + strand, within HGI48_RS02635 at 572.938 kb on + strand, within HGI48_RS02635 at 572.939 kb on - strand, within HGI48_RS02635 at 572.939 kb on - strand, within HGI48_RS02635 at 572.939 kb on - strand, within HGI48_RS02635 at 572.986 kb on + strand at 573.005 kb on + strand at 573.006 kb on - strand at 573.019 kb on - strand at 573.019 kb on - strand at 573.029 kb on - strand at 573.065 kb on + strand at 573.066 kb on - strand at 573.104 kb on - strand at 573.111 kb on + strand at 573.112 kb on - strand at 573.112 kb on - strand at 573.124 kb on + strand at 573.125 kb on - strand at 573.125 kb on - strand at 573.127 kb on + strand at 573.128 kb on - strand at 573.128 kb on - strand at 573.155 kb on + strand, within HGI48_RS02640 at 573.155 kb on + strand, within HGI48_RS02640 at 573.156 kb on - strand, within HGI48_RS02640 at 573.156 kb on - strand, within HGI48_RS02640 at 573.156 kb on - strand, within HGI48_RS02640 at 573.183 kb on + strand, within HGI48_RS02640 at 573.184 kb on - strand, within HGI48_RS02640 at 573.184 kb on - strand, within HGI48_RS02640 at 573.184 kb on - strand, within HGI48_RS02640 at 573.190 kb on + strand, within HGI48_RS02640 at 573.190 kb on + strand, within HGI48_RS02640 at 573.191 kb on - strand, within HGI48_RS02640 at 573.191 kb on - strand, within HGI48_RS02640 at 573.258 kb on + strand, within HGI48_RS02640 at 573.258 kb on + strand, within HGI48_RS02640 at 573.269 kb on - strand, within HGI48_RS02640 at 573.297 kb on - strand, within HGI48_RS02640 at 573.299 kb on + strand, within HGI48_RS02640 at 573.331 kb on + strand, within HGI48_RS02640 at 573.343 kb on + strand, within HGI48_RS02640 at 573.367 kb on - strand at 573.429 kb on + strand, within HGI48_RS02640 at 573.429 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand at 573.431 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand, within HGI48_RS02640 at 573.431 kb on + strand, within HGI48_RS02640 at 573.432 kb on - strand, within HGI48_RS02640 at 573.432 kb on - strand, within HGI48_RS02640 at 573.432 kb on - strand, within HGI48_RS02640 at 573.432 kb on - strand, within HGI48_RS02640 at 573.432 kb on - strand at 573.432 kb on - strand, within HGI48_RS02640 at 573.439 kb on + strand at 573.439 kb on + strand, within HGI48_RS02640 at 573.439 kb on + strand, within HGI48_RS02640 at 573.440 kb on - strand, within HGI48_RS02640 at 573.440 kb on - strand, within HGI48_RS02640 at 573.440 kb on - strand, within HGI48_RS02640 at 573.440 kb on - strand, within HGI48_RS02640 at 573.481 kb on - strand at 573.546 kb on + strand at 573.547 kb on - strand at 573.556 kb on + strand at 573.556 kb on + strand at 573.556 kb on + strand at 573.557 kb on - strand at 573.593 kb on + strand at 573.593 kb on + strand at 573.593 kb on + strand at 573.593 kb on + strand at 573.603 kb on - strand at 573.603 kb on - strand at 573.650 kb on + strand at 573.651 kb on - strand at 573.651 kb on - strand at 573.651 kb on - strand at 573.693 kb on + strand at 573.702 kb on + strand, within HGI48_RS02645 at 573.751 kb on + strand, within HGI48_RS02645 at 573.799 kb on - strand, within HGI48_RS02645 at 573.799 kb on - strand at 573.934 kb on - strand, within HGI48_RS02645 at 573.992 kb on + strand, within HGI48_RS02645 at 573.993 kb on - strand, within HGI48_RS02645 at 574.003 kb on + strand, within HGI48_RS02645 at 574.003 kb on + strand, within HGI48_RS02645 at 574.047 kb on + strand, within HGI48_RS02645 at 574.048 kb on - strand, within HGI48_RS02645 at 574.063 kb on + strand, within HGI48_RS02645 at 574.063 kb on + strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.082 kb on + strand, within HGI48_RS02645 at 574.083 kb on - strand, within HGI48_RS02645 at 574.083 kb on - strand, within HGI48_RS02645
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 571,000 - HGI48_RS02630 0.19 -0.7 571,014 + HGI48_RS02630 0.20 +0.1 571,071 + HGI48_RS02630 0.25 -0.3 571,071 + -0.9 571,075 + HGI48_RS02630 0.25 -0.2 571,076 - HGI48_RS02630 0.25 +1.2 571,076 - HGI48_RS02630 0.25 +1.5 571,150 + HGI48_RS02630 0.31 +1.0 571,150 + HGI48_RS02630 0.31 -2.0 571,150 + HGI48_RS02630 0.31 +0.7 571,171 + HGI48_RS02630 0.33 +0.3 571,172 - HGI48_RS02630 0.33 -0.5 571,223 + HGI48_RS02630 0.37 -0.4 571,227 + HGI48_RS02630 0.38 +1.5 571,227 + HGI48_RS02630 0.38 -0.9 571,227 + HGI48_RS02630 0.38 -1.5 571,228 - HGI48_RS02630 0.38 -1.0 571,228 - HGI48_RS02630 0.38 -1.9 571,228 - HGI48_RS02630 0.38 +0.7 571,228 - HGI48_RS02630 0.38 +1.5 571,228 - HGI48_RS02630 0.38 -0.8 571,236 + HGI48_RS02630 0.39 -1.3 571,237 - +0.1 571,237 - HGI48_RS02630 0.39 +0.4 571,240 + HGI48_RS02630 0.39 +0.9 571,240 + HGI48_RS02630 0.39 +0.4 571,305 + HGI48_RS02630 0.44 -1.3 571,305 + HGI48_RS02630 0.44 -2.1 571,305 + HGI48_RS02630 0.44 +1.0 571,306 - +0.1 571,318 + +0.1 571,370 + +1.1 571,371 - HGI48_RS02630 0.50 +1.4 571,395 + +0.1 571,459 + -0.9 571,470 + HGI48_RS02630 0.58 +0.7 571,471 - +2.0 571,653 + HGI48_RS02630 0.73 -0.3 571,688 - HGI48_RS02630 0.76 -0.4 571,691 - HGI48_RS02630 0.76 -0.3 571,696 - HGI48_RS02630 0.76 +0.5 571,790 + HGI48_RS02630 0.84 -0.0 571,790 + HGI48_RS02630 0.84 +1.4 571,887 - +0.3 571,922 + +1.3 571,923 - -0.1 571,923 - +0.2 571,923 - +1.0 571,923 - +0.0 571,927 - -0.3 571,927 - -0.6 571,943 + -1.3 572,062 - -0.8 572,075 - -0.6 572,120 + HGI48_RS02635 0.12 +1.7 572,125 + HGI48_RS02635 0.13 -0.3 572,126 - HGI48_RS02635 0.13 +0.3 572,202 + +2.5 572,202 + HGI48_RS02635 0.20 +0.3 572,203 - HGI48_RS02635 0.20 -0.1 572,227 + HGI48_RS02635 0.22 -1.9 572,227 + HGI48_RS02635 0.22 -0.6 572,228 - HGI48_RS02635 0.22 -0.2 572,269 + HGI48_RS02635 0.26 -0.2 572,305 - HGI48_RS02635 0.29 +0.7 572,327 - HGI48_RS02635 0.31 +1.1 572,345 + HGI48_RS02635 0.33 -1.3 572,346 - HGI48_RS02635 0.33 -1.2 572,414 + HGI48_RS02635 0.39 -1.6 572,471 + HGI48_RS02635 0.44 -0.1 572,471 + HGI48_RS02635 0.44 +0.2 572,494 + HGI48_RS02635 0.46 +0.2 572,494 + HGI48_RS02635 0.46 -0.5 572,495 - HGI48_RS02635 0.46 -0.0 572,495 - +1.3 572,498 + HGI48_RS02635 0.46 +0.4 572,498 + HGI48_RS02635 0.46 -0.6 572,498 + HGI48_RS02635 0.46 -1.9 572,498 + +2.3 572,499 - HGI48_RS02635 0.46 +1.0 572,500 + HGI48_RS02635 0.47 -0.6 572,582 + HGI48_RS02635 0.54 -1.6 572,582 + HGI48_RS02635 0.54 +0.1 572,582 + HGI48_RS02635 0.54 -0.9 572,582 + HGI48_RS02635 0.54 +0.0 572,583 - HGI48_RS02635 0.54 +2.1 572,583 - HGI48_RS02635 0.54 +0.3 572,583 - +0.7 572,587 - HGI48_RS02635 0.54 +1.3 572,587 - HGI48_RS02635 0.54 -1.2 572,587 - HGI48_RS02635 0.54 +1.0 572,587 - HGI48_RS02635 0.54 +0.9 572,587 - HGI48_RS02635 0.54 +0.1 572,705 + HGI48_RS02635 0.65 -0.5 572,707 + HGI48_RS02635 0.65 -0.0 572,707 + HGI48_RS02635 0.65 -0.3 572,707 + HGI48_RS02635 0.65 -0.9 572,707 + HGI48_RS02635 0.65 +1.0 572,708 - HGI48_RS02635 0.65 -1.0 572,708 - HGI48_RS02635 0.65 -0.0 572,782 - HGI48_RS02635 0.72 -0.0 572,782 - HGI48_RS02635 0.72 -2.4 572,782 - HGI48_RS02635 0.72 +0.3 572,803 + HGI48_RS02635 0.74 -3.2 572,804 - HGI48_RS02635 0.74 -0.0 572,809 - HGI48_RS02635 0.74 -0.6 572,809 - +1.4 572,809 - HGI48_RS02635 0.74 -0.3 572,809 - HGI48_RS02635 0.74 -1.3 572,809 - HGI48_RS02635 0.74 +0.3 572,825 + HGI48_RS02635 0.76 +0.7 572,825 + HGI48_RS02635 0.76 -0.5 572,825 + HGI48_RS02635 0.76 -0.3 572,826 - HGI48_RS02635 0.76 +0.2 572,893 + HGI48_RS02635 0.82 +0.3 572,894 - HGI48_RS02635 0.82 -0.2 572,894 - +1.3 572,933 + HGI48_RS02635 0.85 +0.7 572,934 - HGI48_RS02635 0.86 -0.1 572,934 - HGI48_RS02635 0.86 -0.6 572,938 + HGI48_RS02635 0.86 -0.4 572,938 + HGI48_RS02635 0.86 +1.7 572,938 + HGI48_RS02635 0.86 +0.7 572,939 - HGI48_RS02635 0.86 +0.1 572,939 - HGI48_RS02635 0.86 +0.0 572,939 - HGI48_RS02635 0.86 +0.7 572,986 + +1.2 573,005 + -0.3 573,006 - +0.3 573,019 - -1.3 573,019 - -1.3 573,029 - -1.1 573,065 + +0.5 573,066 - +0.3 573,104 - +0.3 573,111 + -0.0 573,112 - -1.9 573,112 - +0.7 573,124 + -0.3 573,125 - +1.3 573,125 - +0.1 573,127 + -0.0 573,128 - +0.4 573,128 - -0.1 573,155 + HGI48_RS02640 0.10 +0.2 573,155 + HGI48_RS02640 0.10 +0.0 573,156 - HGI48_RS02640 0.11 -0.4 573,156 - HGI48_RS02640 0.11 -0.8 573,156 - HGI48_RS02640 0.11 +0.2 573,183 + HGI48_RS02640 0.17 +1.4 573,184 - HGI48_RS02640 0.17 -0.1 573,184 - HGI48_RS02640 0.17 +0.9 573,184 - HGI48_RS02640 0.17 -0.0 573,190 + HGI48_RS02640 0.19 +0.3 573,190 + HGI48_RS02640 0.19 -0.2 573,191 - HGI48_RS02640 0.19 +0.7 573,191 - HGI48_RS02640 0.19 -1.3 573,258 + HGI48_RS02640 0.36 -0.2 573,258 + HGI48_RS02640 0.36 +0.8 573,269 - HGI48_RS02640 0.38 -1.5 573,297 - HGI48_RS02640 0.45 -1.2 573,299 + HGI48_RS02640 0.46 -0.9 573,331 + HGI48_RS02640 0.53 +0.4 573,343 + HGI48_RS02640 0.56 +0.0 573,367 - +2.3 573,429 + HGI48_RS02640 0.77 +0.9 573,429 + HGI48_RS02640 0.77 -0.5 573,431 + HGI48_RS02640 0.78 -0.7 573,431 + HGI48_RS02640 0.78 +0.5 573,431 + HGI48_RS02640 0.78 -0.9 573,431 + HGI48_RS02640 0.78 +0.2 573,431 + HGI48_RS02640 0.78 -0.5 573,431 + HGI48_RS02640 0.78 +0.3 573,431 + HGI48_RS02640 0.78 -1.8 573,431 + +1.1 573,431 + HGI48_RS02640 0.78 -0.2 573,431 + HGI48_RS02640 0.78 +0.1 573,431 + HGI48_RS02640 0.78 +0.6 573,432 - HGI48_RS02640 0.78 +0.8 573,432 - HGI48_RS02640 0.78 -0.6 573,432 - HGI48_RS02640 0.78 -0.7 573,432 - HGI48_RS02640 0.78 -0.5 573,432 - -0.3 573,432 - HGI48_RS02640 0.78 -0.5 573,439 + -0.9 573,439 + HGI48_RS02640 0.80 +0.2 573,439 + HGI48_RS02640 0.80 -0.7 573,440 - HGI48_RS02640 0.80 +0.3 573,440 - HGI48_RS02640 0.80 +0.9 573,440 - HGI48_RS02640 0.80 +0.2 573,440 - HGI48_RS02640 0.80 +0.6 573,481 - -0.2 573,546 + -0.2 573,547 - -0.9 573,556 + -0.0 573,556 + -1.1 573,556 + +0.7 573,557 - +1.0 573,593 + +0.7 573,593 + -0.9 573,593 + +0.6 573,593 + +0.1 573,603 - +0.1 573,603 - +1.0 573,650 + +0.0 573,651 - +1.1 573,651 - -0.0 573,651 - +1.7 573,693 + -0.3 573,702 + HGI48_RS02645 0.10 +1.4 573,751 + HGI48_RS02645 0.14 -0.9 573,799 - HGI48_RS02645 0.17 -0.9 573,799 - -0.3 573,934 - HGI48_RS02645 0.27 +0.4 573,992 + HGI48_RS02645 0.31 -1.6 573,993 - HGI48_RS02645 0.31 -1.4 574,003 + HGI48_RS02645 0.32 +0.8 574,003 + HGI48_RS02645 0.32 -0.4 574,047 + HGI48_RS02645 0.35 -0.2 574,048 - HGI48_RS02645 0.35 -0.0 574,063 + HGI48_RS02645 0.36 -2.0 574,063 + HGI48_RS02645 0.36 +0.1 574,064 - HGI48_RS02645 0.36 +1.5 574,064 - HGI48_RS02645 0.36 +0.3 574,064 - HGI48_RS02645 0.36 -1.5 574,064 - HGI48_RS02645 0.36 -0.0 574,064 - HGI48_RS02645 0.36 -1.6 574,082 + HGI48_RS02645 0.37 +0.3 574,083 - HGI48_RS02645 0.38 -0.4 574,083 - HGI48_RS02645 0.38 +0.7
Or see this region's nucleotide sequence