Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02445 and HGI48_RS02450 are separated by 16 nucleotides HGI48_RS02450 and HGI48_RS02455 overlap by 4 nucleotides HGI48_RS02455 and HGI48_RS02460 are separated by 104 nucleotides HGI48_RS02460 and HGI48_RS02465 are separated by 73 nucleotides
HGI48_RS02445: HGI48_RS02445 - ATP-binding cassette domain-containing protein, at 529,773 to 530,309
_RS02445
HGI48_RS02450: HGI48_RS02450 - ABC transporter substrate-binding protein, at 530,326 to 531,267
_RS02450
HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262
_RS02455
HGI48_RS02460: HGI48_RS02460 - alkyl hydroperoxide reductase subunit C, at 532,367 to 532,930
_RS02460
HGI48_RS02465: HGI48_RS02465 - alkyl hydroperoxide reductase subunit F, at 533,004 to 534,566
_RS02465
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.274 kb on + strand at 530.274 kb on + strand at 530.282 kb on + strand at 530.282 kb on + strand at 530.283 kb on - strand at 530.283 kb on - strand at 530.283 kb on - strand at 530.387 kb on + strand at 530.585 kb on - strand, within HGI48_RS02450 at 530.585 kb on - strand, within HGI48_RS02450 at 530.585 kb on - strand at 530.645 kb on - strand at 530.693 kb on - strand, within HGI48_RS02450 at 530.693 kb on - strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.728 kb on - strand at 530.728 kb on - strand, within HGI48_RS02450 at 530.768 kb on + strand, within HGI48_RS02450 at 530.768 kb on + strand at 530.768 kb on + strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.908 kb on + strand, within HGI48_RS02450 at 530.925 kb on + strand, within HGI48_RS02450 at 530.925 kb on + strand, within HGI48_RS02450 at 530.947 kb on + strand, within HGI48_RS02450 at 530.948 kb on - strand, within HGI48_RS02450 at 531.079 kb on + strand, within HGI48_RS02450 at 531.080 kb on - strand, within HGI48_RS02450 at 531.184 kb on + strand at 531.282 kb on + strand at 531.282 kb on + strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.304 kb on + strand at 531.305 kb on - strand at 531.305 kb on - strand at 531.738 kb on - strand, within HGI48_RS02455 at 531.738 kb on - strand, within HGI48_RS02455 at 531.738 kb on - strand at 531.768 kb on + strand, within HGI48_RS02455 at 531.768 kb on + strand, within HGI48_RS02455 at 531.768 kb on + strand, within HGI48_RS02455 at 531.769 kb on - strand, within HGI48_RS02455 at 531.769 kb on - strand, within HGI48_RS02455 at 532.260 kb on + strand at 532.260 kb on + strand at 532.271 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.381 kb on + strand at 532.381 kb on + strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.384 kb on + strand at 532.385 kb on - strand at 532.482 kb on - strand, within HGI48_RS02460 at 532.496 kb on - strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.539 kb on - strand, within HGI48_RS02460 at 532.563 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.572 kb on - strand at 532.572 kb on - strand, within HGI48_RS02460 at 532.572 kb on - strand, within HGI48_RS02460 at 532.597 kb on + strand, within HGI48_RS02460 at 532.598 kb on - strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.835 kb on + strand, within HGI48_RS02460 at 532.928 kb on + strand at 532.998 kb on + strand at 532.998 kb on + strand at 533.003 kb on + strand at 533.003 kb on + strand at 533.004 kb on - strand at 533.015 kb on + strand at 533.040 kb on + strand at 533.176 kb on + strand, within HGI48_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 530,274 + +0.2 530,274 + -1.6 530,282 + +1.7 530,282 + -1.3 530,283 - -0.2 530,283 - +1.4 530,283 - -1.3 530,387 + +0.9 530,585 - HGI48_RS02450 0.27 +0.1 530,585 - HGI48_RS02450 0.27 -0.1 530,585 - +1.1 530,645 - +1.9 530,693 - HGI48_RS02450 0.39 -0.3 530,693 - HGI48_RS02450 0.39 -1.2 530,727 + HGI48_RS02450 0.43 -0.1 530,727 + HGI48_RS02450 0.43 -0.3 530,727 + HGI48_RS02450 0.43 -0.5 530,728 - +0.7 530,728 - HGI48_RS02450 0.43 -0.3 530,768 + HGI48_RS02450 0.47 -0.0 530,768 + -0.3 530,768 + HGI48_RS02450 0.47 +0.1 530,769 - HGI48_RS02450 0.47 +0.5 530,769 - HGI48_RS02450 0.47 +0.3 530,769 - HGI48_RS02450 0.47 -1.1 530,769 - HGI48_RS02450 0.47 -0.6 530,901 - HGI48_RS02450 0.61 -1.3 530,901 - HGI48_RS02450 0.61 -1.5 530,901 - HGI48_RS02450 0.61 +0.3 530,908 + HGI48_RS02450 0.62 +0.4 530,925 + HGI48_RS02450 0.64 -1.6 530,925 + HGI48_RS02450 0.64 +0.4 530,947 + HGI48_RS02450 0.66 -0.7 530,948 - HGI48_RS02450 0.66 -0.1 531,079 + HGI48_RS02450 0.80 -0.9 531,080 - HGI48_RS02450 0.80 -0.6 531,184 + +0.7 531,282 + -0.4 531,282 + -2.1 531,283 - -0.2 531,283 - -1.1 531,283 - +1.3 531,283 - -0.4 531,304 + -0.0 531,305 - -2.1 531,305 - -0.6 531,738 - HGI48_RS02455 0.47 -0.0 531,738 - HGI48_RS02455 0.47 -0.7 531,738 - +1.4 531,768 + HGI48_RS02455 0.50 +0.4 531,768 + HGI48_RS02455 0.50 +1.7 531,768 + HGI48_RS02455 0.50 +1.7 531,769 - HGI48_RS02455 0.51 -0.1 531,769 - HGI48_RS02455 0.51 -0.6 532,260 + +0.1 532,260 + +0.5 532,271 + -0.6 532,324 + +0.8 532,324 + +0.9 532,324 + -0.6 532,325 - -0.0 532,325 - -0.7 532,325 - -1.9 532,325 - +0.0 532,325 - -0.7 532,325 - +1.1 532,345 + -0.3 532,345 + +0.0 532,345 + +1.1 532,345 + +0.1 532,346 - -0.5 532,346 - -2.3 532,346 - -1.3 532,352 + +1.3 532,352 + -0.3 532,352 + -1.0 532,353 - -1.6 532,353 - -0.8 532,353 - +0.1 532,353 - -1.9 532,381 + -1.0 532,381 + -1.2 532,382 - +1.0 532,382 - -2.6 532,382 - +1.9 532,384 + -0.7 532,385 - -1.3 532,482 - HGI48_RS02460 0.20 -0.3 532,496 - HGI48_RS02460 0.23 -0.7 532,538 + HGI48_RS02460 0.30 +0.2 532,538 + HGI48_RS02460 0.30 -0.9 532,539 - HGI48_RS02460 0.30 +0.1 532,563 + HGI48_RS02460 0.35 -1.6 532,571 + HGI48_RS02460 0.36 +0.7 532,571 + HGI48_RS02460 0.36 +0.2 532,571 + HGI48_RS02460 0.36 +0.3 532,572 - -0.9 532,572 - HGI48_RS02460 0.36 +0.1 532,572 - HGI48_RS02460 0.36 +0.9 532,597 + HGI48_RS02460 0.41 +0.3 532,598 - HGI48_RS02460 0.41 -0.1 532,646 + HGI48_RS02460 0.49 -0.3 532,646 + HGI48_RS02460 0.49 +0.7 532,646 + HGI48_RS02460 0.49 -0.3 532,647 - HGI48_RS02460 0.50 -0.1 532,647 - HGI48_RS02460 0.50 -0.9 532,647 - HGI48_RS02460 0.50 -1.1 532,647 - HGI48_RS02460 0.50 +0.4 532,647 - HGI48_RS02460 0.50 +0.7 532,647 - HGI48_RS02460 0.50 +0.3 532,835 + HGI48_RS02460 0.83 -0.7 532,928 + -0.4 532,998 + +1.1 532,998 + -0.3 533,003 + -1.7 533,003 + -0.0 533,004 - +0.7 533,015 + +0.3 533,040 + -0.0 533,176 + HGI48_RS02465 0.11 +0.2
Or see this region's nucleotide sequence