Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02395 and HGI48_RS02400 are separated by 376 nucleotides HGI48_RS02400 and HGI48_RS02405 are separated by 359 nucleotides
HGI48_RS02395: HGI48_RS02395 - trans-aconitate 2-methyltransferase, at 518,800 to 519,576
_RS02395
HGI48_RS02400: HGI48_RS02400 - peptide chain release factor 3, at 519,953 to 521,542
_RS02400
HGI48_RS02405: HGI48_RS02405 - molecular chaperone OsmY, at 521,902 to 522,540
_RS02405
Position (kb) 519
520
521
522 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 518.979 kb on + strand, within HGI48_RS02395 at 518.979 kb on + strand, within HGI48_RS02395 at 518.979 kb on + strand, within HGI48_RS02395 at 518.980 kb on - strand, within HGI48_RS02395 at 518.980 kb on - strand at 519.008 kb on + strand, within HGI48_RS02395 at 519.008 kb on + strand, within HGI48_RS02395 at 519.008 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.062 kb on + strand, within HGI48_RS02395 at 519.063 kb on - strand, within HGI48_RS02395 at 519.065 kb on + strand, within HGI48_RS02395 at 519.284 kb on + strand, within HGI48_RS02395 at 519.285 kb on - strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.343 kb on - strand, within HGI48_RS02395 at 519.551 kb on + strand at 519.591 kb on + strand at 519.608 kb on + strand at 519.608 kb on + strand at 519.608 kb on + strand at 519.621 kb on + strand at 519.622 kb on - strand at 519.622 kb on - strand at 519.622 kb on - strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.630 kb on - strand at 519.630 kb on - strand at 519.630 kb on - strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.733 kb on - strand at 519.733 kb on - strand at 519.733 kb on - strand at 519.744 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.749 kb on - strand at 519.761 kb on + strand at 519.862 kb on + strand at 519.862 kb on + strand at 519.880 kb on + strand at 519.880 kb on + strand at 519.935 kb on + strand at 521.459 kb on + strand at 521.524 kb on + strand at 521.540 kb on + strand at 521.540 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.722 kb on - strand at 521.725 kb on + strand at 521.725 kb on + strand at 521.726 kb on - strand at 521.753 kb on + strand at 521.754 kb on - strand at 521.754 kb on - strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.783 kb on + strand at 521.784 kb on - strand at 521.802 kb on + strand at 521.814 kb on + strand at 521.814 kb on + strand at 521.815 kb on - strand at 521.815 kb on - strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.882 kb on + strand at 521.897 kb on + strand at 521.897 kb on + strand at 521.922 kb on - strand at 521.932 kb on - strand at 521.932 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.936 kb on - strand at 521.957 kb on + strand at 521.958 kb on - strand at 521.968 kb on - strand, within HGI48_RS02405 at 522.031 kb on - strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.085 kb on + strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.086 kb on - strand, within HGI48_RS02405 at 522.105 kb on + strand at 522.279 kb on + strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.280 kb on - strand, within HGI48_RS02405 at 522.297 kb on + strand at 522.298 kb on - strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.325 kb on + strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.326 kb on - strand, within HGI48_RS02405 at 522.363 kb on + strand, within HGI48_RS02405 at 522.364 kb on - strand at 522.364 kb on - strand, within HGI48_RS02405 at 522.368 kb on + strand, within HGI48_RS02405 at 522.368 kb on + strand at 522.402 kb on + strand, within HGI48_RS02405 at 522.403 kb on - strand at 522.403 kb on - strand, within HGI48_RS02405 at 522.407 kb on + strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.408 kb on - strand, within HGI48_RS02405 at 522.505 kb on - strand at 522.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 518,979 + HGI48_RS02395 0.23 -0.3 518,979 + HGI48_RS02395 0.23 -2.5 518,979 + HGI48_RS02395 0.23 -1.6 518,980 - HGI48_RS02395 0.23 -1.6 518,980 - -0.3 519,008 + HGI48_RS02395 0.27 +0.8 519,008 + HGI48_RS02395 0.27 +0.2 519,008 + HGI48_RS02395 0.27 -0.6 519,011 + HGI48_RS02395 0.27 -0.7 519,011 + -0.9 519,011 + HGI48_RS02395 0.27 -0.7 519,011 + HGI48_RS02395 0.27 +0.4 519,011 + HGI48_RS02395 0.27 -0.0 519,011 + HGI48_RS02395 0.27 -1.1 519,011 + HGI48_RS02395 0.27 -0.5 519,012 - HGI48_RS02395 0.27 -1.3 519,012 - HGI48_RS02395 0.27 -0.1 519,012 - HGI48_RS02395 0.27 -0.3 519,012 - HGI48_RS02395 0.27 -0.1 519,062 + HGI48_RS02395 0.34 -1.3 519,063 - HGI48_RS02395 0.34 -1.1 519,065 + HGI48_RS02395 0.34 -0.7 519,284 + HGI48_RS02395 0.62 -0.6 519,285 - HGI48_RS02395 0.62 +0.0 519,342 + HGI48_RS02395 0.70 -1.2 519,342 + HGI48_RS02395 0.70 -1.9 519,342 + HGI48_RS02395 0.70 +1.0 519,343 - HGI48_RS02395 0.70 +0.3 519,551 + +0.4 519,591 + -0.9 519,608 + +0.1 519,608 + -1.3 519,608 + +0.9 519,621 + -0.0 519,622 - -1.3 519,622 - +1.2 519,622 - -0.5 519,629 + -0.9 519,629 + +0.5 519,629 + -1.9 519,629 + -0.1 519,630 - +0.7 519,630 - +1.7 519,630 - -0.3 519,728 + -0.6 519,728 + -2.1 519,728 + -0.1 519,728 + -0.5 519,728 + +0.4 519,728 + -0.6 519,728 + -0.6 519,728 + +0.1 519,728 + +0.3 519,728 + -0.3 519,728 + -1.3 519,728 + +0.3 519,728 + -0.1 519,729 - +0.4 519,729 - -1.1 519,729 - -0.9 519,729 - +0.1 519,732 + -1.0 519,732 + +0.4 519,732 + -0.3 519,732 + -1.1 519,732 + +1.3 519,733 - +0.3 519,733 - -2.3 519,733 - -1.3 519,744 + +0.5 519,748 + -2.4 519,748 + -1.1 519,748 + +0.4 519,748 + +0.4 519,748 + -0.4 519,748 + +0.8 519,748 + +0.1 519,748 + +3.5 519,748 + +0.3 519,748 + +0.1 519,748 + -1.3 519,749 - -0.1 519,761 + -2.1 519,862 + -1.6 519,862 + +0.5 519,880 + +2.3 519,880 + -0.6 519,935 + +0.3 521,459 + -1.3 521,524 + +0.1 521,540 + +0.7 521,540 + +1.8 521,721 + -0.5 521,721 + +0.7 521,721 + -0.3 521,721 + -0.0 521,722 - +0.0 521,722 - +1.7 521,722 - -0.5 521,722 - -0.3 521,725 + -1.1 521,725 + -0.9 521,726 - -0.3 521,753 + +3.6 521,754 - -0.9 521,754 - -0.7 521,783 + +0.7 521,783 + +0.7 521,783 + +0.1 521,783 + -0.4 521,784 - -0.1 521,802 + +0.7 521,814 + -0.9 521,814 + -0.3 521,815 - -0.3 521,815 - -0.0 521,834 - -0.3 521,834 - +0.9 521,882 + -1.9 521,897 + +0.2 521,897 + -0.0 521,922 - -1.5 521,932 - +0.3 521,932 - +1.3 521,936 - -0.6 521,936 - +0.7 521,936 - +0.0 521,936 - +0.7 521,957 + -2.8 521,958 - +0.3 521,968 - HGI48_RS02405 0.10 -1.1 522,031 - HGI48_RS02405 0.20 +0.9 522,085 + HGI48_RS02405 0.29 -1.3 522,085 + HGI48_RS02405 0.29 -0.4 522,085 + HGI48_RS02405 0.29 +0.3 522,085 + HGI48_RS02405 0.29 +0.3 522,085 + HGI48_RS02405 0.29 -0.3 522,086 - HGI48_RS02405 0.29 -2.3 522,086 - HGI48_RS02405 0.29 -1.6 522,086 - -0.9 522,086 - HGI48_RS02405 0.29 -0.1 522,086 - HGI48_RS02405 0.29 -1.3 522,086 - HGI48_RS02405 0.29 -0.1 522,105 + -0.9 522,279 + HGI48_RS02405 0.59 -0.2 522,280 - HGI48_RS02405 0.59 -1.5 522,280 - HGI48_RS02405 0.59 -0.0 522,297 + +0.1 522,298 - HGI48_RS02405 0.62 +0.8 522,325 + HGI48_RS02405 0.66 +0.7 522,325 + HGI48_RS02405 0.66 +0.4 522,325 + HGI48_RS02405 0.66 -3.4 522,325 + HGI48_RS02405 0.66 -1.6 522,325 + +0.1 522,325 + HGI48_RS02405 0.66 -0.5 522,325 + HGI48_RS02405 0.66 -0.3 522,325 + HGI48_RS02405 0.66 +0.5 522,326 - HGI48_RS02405 0.66 +0.3 522,326 - HGI48_RS02405 0.66 -0.3 522,326 - HGI48_RS02405 0.66 +0.7 522,326 - HGI48_RS02405 0.66 -1.1 522,326 - HGI48_RS02405 0.66 +1.3 522,326 - HGI48_RS02405 0.66 -1.3 522,326 - HGI48_RS02405 0.66 +0.3 522,363 + HGI48_RS02405 0.72 +0.9 522,364 - +1.7 522,364 - HGI48_RS02405 0.72 -2.6 522,368 + HGI48_RS02405 0.73 -0.3 522,368 + +1.7 522,402 + HGI48_RS02405 0.78 +0.4 522,403 - +0.1 522,403 - HGI48_RS02405 0.78 +0.2 522,407 + HGI48_RS02405 0.79 +0.1 522,408 - HGI48_RS02405 0.79 -1.6 522,408 - HGI48_RS02405 0.79 -0.0 522,505 - -0.1 522,505 - -1.6
Or see this region's nucleotide sequence