Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02080 and HGI48_RS02085 are separated by 89 nucleotides HGI48_RS02085 and HGI48_RS02090 are separated by 146 nucleotides
HGI48_RS02080: HGI48_RS02080 - hypothetical protein, at 455,891 to 456,694
_RS02080
HGI48_RS02085: HGI48_RS02085 - amino acid transporter, at 456,784 to 457,410
_RS02085
HGI48_RS02090: HGI48_RS02090 - HNH endonuclease, at 457,557 to 458,333
_RS02090
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.854 kb on + strand at 455.854 kb on + strand at 455.854 kb on + strand at 455.855 kb on - strand at 455.855 kb on - strand at 455.855 kb on - strand at 455.855 kb on - strand at 455.855 kb on - strand at 455.855 kb on - strand at 455.970 kb on + strand at 455.970 kb on + strand at 455.970 kb on + strand at 455.974 kb on + strand, within HGI48_RS02080 at 455.974 kb on + strand, within HGI48_RS02080 at 455.974 kb on + strand, within HGI48_RS02080 at 455.974 kb on + strand, within HGI48_RS02080 at 455.974 kb on + strand, within HGI48_RS02080 at 455.974 kb on + strand, within HGI48_RS02080 at 455.974 kb on + strand, within HGI48_RS02080 at 455.975 kb on - strand, within HGI48_RS02080 at 455.975 kb on - strand, within HGI48_RS02080 at 455.975 kb on - strand, within HGI48_RS02080 at 455.975 kb on - strand, within HGI48_RS02080 at 455.975 kb on - strand, within HGI48_RS02080 at 455.975 kb on - strand, within HGI48_RS02080 at 455.975 kb on - strand, within HGI48_RS02080 at 455.975 kb on - strand, within HGI48_RS02080 at 455.978 kb on + strand, within HGI48_RS02080 at 455.978 kb on + strand, within HGI48_RS02080 at 455.978 kb on + strand, within HGI48_RS02080 at 455.978 kb on + strand, within HGI48_RS02080 at 455.979 kb on - strand, within HGI48_RS02080 at 455.979 kb on - strand, within HGI48_RS02080 at 456.211 kb on - strand, within HGI48_RS02080 at 456.211 kb on - strand, within HGI48_RS02080 at 456.211 kb on - strand, within HGI48_RS02080 at 456.227 kb on + strand, within HGI48_RS02080 at 456.228 kb on - strand, within HGI48_RS02080 at 456.228 kb on - strand, within HGI48_RS02080 at 456.228 kb on - strand, within HGI48_RS02080 at 456.228 kb on - strand, within HGI48_RS02080 at 456.228 kb on - strand, within HGI48_RS02080 at 456.374 kb on + strand at 456.375 kb on - strand, within HGI48_RS02080 at 456.375 kb on - strand, within HGI48_RS02080 at 456.385 kb on - strand, within HGI48_RS02080 at 456.429 kb on + strand, within HGI48_RS02080 at 456.429 kb on + strand at 456.429 kb on + strand, within HGI48_RS02080 at 456.430 kb on - strand, within HGI48_RS02080 at 456.430 kb on - strand, within HGI48_RS02080 at 456.458 kb on + strand, within HGI48_RS02080 at 456.459 kb on - strand, within HGI48_RS02080 at 456.537 kb on - strand, within HGI48_RS02080 at 456.537 kb on - strand, within HGI48_RS02080 at 456.537 kb on - strand, within HGI48_RS02080 at 456.537 kb on - strand, within HGI48_RS02080 at 456.644 kb on - strand at 456.650 kb on + strand at 456.650 kb on + strand at 456.650 kb on + strand at 456.650 kb on + strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.651 kb on - strand at 456.680 kb on + strand at 456.692 kb on + strand at 456.692 kb on + strand at 456.692 kb on + strand at 456.692 kb on + strand at 456.692 kb on + strand at 456.693 kb on - strand at 456.693 kb on - strand at 456.693 kb on - strand at 456.693 kb on - strand at 456.788 kb on - strand at 456.794 kb on + strand at 456.823 kb on - strand at 456.832 kb on - strand at 456.832 kb on - strand at 456.833 kb on + strand at 456.834 kb on - strand at 456.834 kb on - strand at 456.834 kb on - strand at 456.920 kb on + strand, within HGI48_RS02085 at 456.920 kb on + strand, within HGI48_RS02085 at 456.921 kb on - strand, within HGI48_RS02085 at 456.921 kb on - strand, within HGI48_RS02085 at 456.959 kb on + strand, within HGI48_RS02085 at 456.960 kb on - strand, within HGI48_RS02085 at 456.960 kb on - strand, within HGI48_RS02085 at 457.025 kb on + strand, within HGI48_RS02085 at 457.025 kb on + strand, within HGI48_RS02085 at 457.025 kb on + strand, within HGI48_RS02085 at 457.026 kb on - strand, within HGI48_RS02085 at 457.026 kb on - strand, within HGI48_RS02085 at 457.026 kb on - strand at 457.026 kb on - strand, within HGI48_RS02085 at 457.154 kb on + strand, within HGI48_RS02085 at 457.330 kb on + strand, within HGI48_RS02085 at 457.331 kb on - strand, within HGI48_RS02085 at 457.381 kb on - strand at 457.432 kb on - strand at 457.440 kb on + strand at 457.440 kb on + strand at 457.472 kb on - strand at 457.506 kb on + strand at 457.506 kb on + strand at 457.532 kb on + strand at 457.532 kb on + strand at 457.533 kb on - strand at 457.533 kb on - strand at 457.538 kb on + strand at 457.538 kb on + strand at 457.539 kb on - strand at 457.539 kb on - strand at 457.539 kb on - strand at 457.595 kb on + strand at 457.615 kb on + strand at 457.615 kb on + strand at 457.615 kb on + strand at 457.615 kb on + strand at 457.615 kb on + strand at 457.616 kb on - strand at 457.654 kb on + strand at 457.654 kb on + strand, within HGI48_RS02090 at 457.654 kb on + strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.655 kb on - strand, within HGI48_RS02090 at 457.677 kb on - strand, within HGI48_RS02090 at 457.677 kb on - strand, within HGI48_RS02090 at 457.716 kb on + strand at 457.716 kb on + strand, within HGI48_RS02090 at 457.716 kb on + strand, within HGI48_RS02090 at 457.716 kb on + strand, within HGI48_RS02090 at 457.717 kb on - strand, within HGI48_RS02090 at 457.717 kb on - strand, within HGI48_RS02090 at 457.717 kb on - strand at 457.717 kb on - strand, within HGI48_RS02090 at 457.743 kb on + strand, within HGI48_RS02090 at 457.743 kb on + strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.744 kb on - strand, within HGI48_RS02090 at 457.785 kb on + strand at 457.785 kb on + strand, within HGI48_RS02090 at 457.785 kb on + strand, within HGI48_RS02090 at 457.786 kb on - strand, within HGI48_RS02090 at 457.786 kb on - strand, within HGI48_RS02090 at 457.786 kb on - strand, within HGI48_RS02090 at 457.786 kb on - strand, within HGI48_RS02090 at 457.786 kb on - strand at 457.838 kb on + strand, within HGI48_RS02090 at 457.839 kb on - strand at 457.854 kb on + strand, within HGI48_RS02090 at 457.855 kb on - strand, within HGI48_RS02090 at 457.881 kb on - strand, within HGI48_RS02090 at 457.881 kb on - strand at 457.881 kb on - strand, within HGI48_RS02090 at 457.898 kb on - strand, within HGI48_RS02090 at 457.976 kb on - strand at 458.124 kb on + strand, within HGI48_RS02090 at 458.125 kb on - strand, within HGI48_RS02090 at 458.125 kb on - strand, within HGI48_RS02090 at 458.125 kb on - strand, within HGI48_RS02090 at 458.232 kb on - strand, within HGI48_RS02090 at 458.232 kb on - strand, within HGI48_RS02090 at 458.269 kb on - strand at 458.278 kb on + strand at 458.279 kb on - strand at 458.279 kb on - strand at 458.285 kb on + strand at 458.298 kb on + strand at 458.299 kb on - strand at 458.299 kb on - strand at 458.299 kb on - strand at 458.351 kb on - strand at 458.351 kb on - strand at 458.355 kb on + strand at 458.356 kb on - strand at 458.371 kb on - strand at 458.371 kb on - strand at 458.375 kb on + strand at 458.376 kb on - strand at 458.379 kb on + strand at 458.379 kb on + strand at 458.380 kb on - strand at 458.380 kb on - strand at 458.380 kb on - strand at 458.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 455,854 + +0.7 455,854 + -1.1 455,854 + +0.1 455,855 - +0.3 455,855 - +0.2 455,855 - +0.3 455,855 - -1.2 455,855 - -0.1 455,855 - -0.3 455,970 + +0.5 455,970 + -1.0 455,970 + +0.0 455,974 + HGI48_RS02080 0.10 -1.4 455,974 + HGI48_RS02080 0.10 -1.0 455,974 + HGI48_RS02080 0.10 +0.2 455,974 + HGI48_RS02080 0.10 -1.1 455,974 + HGI48_RS02080 0.10 -2.1 455,974 + HGI48_RS02080 0.10 +0.7 455,974 + HGI48_RS02080 0.10 +0.3 455,975 - HGI48_RS02080 0.10 -1.8 455,975 - HGI48_RS02080 0.10 +1.7 455,975 - HGI48_RS02080 0.10 -1.7 455,975 - HGI48_RS02080 0.10 -0.4 455,975 - HGI48_RS02080 0.10 +0.7 455,975 - HGI48_RS02080 0.10 -0.3 455,975 - HGI48_RS02080 0.10 -0.3 455,975 - HGI48_RS02080 0.10 -0.8 455,978 + HGI48_RS02080 0.11 -0.0 455,978 + HGI48_RS02080 0.11 +0.0 455,978 + HGI48_RS02080 0.11 +0.5 455,978 + HGI48_RS02080 0.11 -1.8 455,979 - HGI48_RS02080 0.11 +0.3 455,979 - HGI48_RS02080 0.11 -0.4 456,211 - HGI48_RS02080 0.40 +0.4 456,211 - HGI48_RS02080 0.40 +0.0 456,211 - HGI48_RS02080 0.40 +0.3 456,227 + HGI48_RS02080 0.42 +2.2 456,228 - HGI48_RS02080 0.42 -0.3 456,228 - HGI48_RS02080 0.42 -0.1 456,228 - HGI48_RS02080 0.42 -1.4 456,228 - HGI48_RS02080 0.42 -1.4 456,228 - HGI48_RS02080 0.42 -0.1 456,374 + +0.7 456,375 - HGI48_RS02080 0.60 -0.1 456,375 - HGI48_RS02080 0.60 +0.0 456,385 - HGI48_RS02080 0.61 -1.3 456,429 + HGI48_RS02080 0.67 -0.3 456,429 + -0.3 456,429 + HGI48_RS02080 0.67 -1.6 456,430 - HGI48_RS02080 0.67 -0.3 456,430 - HGI48_RS02080 0.67 -0.8 456,458 + HGI48_RS02080 0.71 -0.3 456,459 - HGI48_RS02080 0.71 +0.5 456,537 - HGI48_RS02080 0.80 -1.3 456,537 - HGI48_RS02080 0.80 +0.3 456,537 - HGI48_RS02080 0.80 -0.8 456,537 - HGI48_RS02080 0.80 -0.3 456,644 - +0.2 456,650 + +0.4 456,650 + -0.1 456,650 + +1.1 456,650 + +0.0 456,651 - +0.3 456,651 - -0.0 456,651 - -0.3 456,651 - -1.3 456,651 - +0.2 456,651 - -0.3 456,651 - +0.1 456,651 - -0.1 456,651 - -0.1 456,651 - -1.4 456,651 - -0.5 456,651 - +0.6 456,680 + +0.4 456,692 + +0.2 456,692 + -0.3 456,692 + -0.8 456,692 + -0.3 456,692 + -1.6 456,693 - -0.4 456,693 - -1.4 456,693 - +0.5 456,693 - -0.6 456,788 - +0.0 456,794 + -0.4 456,823 - +1.3 456,832 - -1.9 456,832 - -0.3 456,833 + -0.4 456,834 - +0.7 456,834 - -2.1 456,834 - +0.3 456,920 + HGI48_RS02085 0.22 -1.1 456,920 + HGI48_RS02085 0.22 +0.7 456,921 - HGI48_RS02085 0.22 +1.4 456,921 - HGI48_RS02085 0.22 -1.4 456,959 + HGI48_RS02085 0.28 +0.4 456,960 - HGI48_RS02085 0.28 +1.0 456,960 - HGI48_RS02085 0.28 -0.3 457,025 + HGI48_RS02085 0.38 -0.5 457,025 + HGI48_RS02085 0.38 -0.3 457,025 + HGI48_RS02085 0.38 +0.6 457,026 - HGI48_RS02085 0.39 -0.3 457,026 - HGI48_RS02085 0.39 +1.0 457,026 - -0.8 457,026 - HGI48_RS02085 0.39 -0.6 457,154 + HGI48_RS02085 0.59 -0.6 457,330 + HGI48_RS02085 0.87 +0.5 457,331 - HGI48_RS02085 0.87 +1.0 457,381 - -0.4 457,432 - -0.3 457,440 + -1.1 457,440 + +0.0 457,472 - -0.8 457,506 + -0.8 457,506 + -0.3 457,532 + +0.3 457,532 + +0.7 457,533 - -0.3 457,533 - +0.0 457,538 + -0.7 457,538 + -1.1 457,539 - -0.2 457,539 - -0.4 457,539 - +0.3 457,595 + -0.7 457,615 + -0.5 457,615 + -0.3 457,615 + -1.3 457,615 + -0.4 457,615 + -0.3 457,616 - -1.0 457,654 + +0.7 457,654 + HGI48_RS02090 0.12 -0.6 457,654 + HGI48_RS02090 0.12 +0.7 457,655 - HGI48_RS02090 0.13 -1.3 457,655 - HGI48_RS02090 0.13 -0.5 457,655 - HGI48_RS02090 0.13 -2.1 457,655 - HGI48_RS02090 0.13 -1.8 457,655 - HGI48_RS02090 0.13 +0.4 457,655 - HGI48_RS02090 0.13 -0.3 457,655 - HGI48_RS02090 0.13 +0.1 457,677 - HGI48_RS02090 0.15 +0.1 457,677 - HGI48_RS02090 0.15 -0.5 457,716 + +1.7 457,716 + HGI48_RS02090 0.20 -0.3 457,716 + HGI48_RS02090 0.20 +0.0 457,716 + HGI48_RS02090 0.20 -0.7 457,717 - HGI48_RS02090 0.21 -0.3 457,717 - HGI48_RS02090 0.21 -1.8 457,717 - +1.2 457,717 - HGI48_RS02090 0.21 +0.7 457,743 + HGI48_RS02090 0.24 -2.3 457,743 + HGI48_RS02090 0.24 -0.4 457,744 - HGI48_RS02090 0.24 -2.1 457,744 - HGI48_RS02090 0.24 -0.8 457,744 - HGI48_RS02090 0.24 +0.4 457,744 - HGI48_RS02090 0.24 -1.0 457,744 - HGI48_RS02090 0.24 -0.5 457,744 - HGI48_RS02090 0.24 +0.3 457,785 + +0.2 457,785 + HGI48_RS02090 0.29 +0.2 457,785 + HGI48_RS02090 0.29 +0.1 457,786 - HGI48_RS02090 0.29 +1.0 457,786 - HGI48_RS02090 0.29 +0.2 457,786 - HGI48_RS02090 0.29 +0.7 457,786 - HGI48_RS02090 0.29 -0.5 457,786 - +2.7 457,838 + HGI48_RS02090 0.36 +0.9 457,839 - -0.3 457,854 + HGI48_RS02090 0.38 -0.3 457,855 - HGI48_RS02090 0.38 -0.8 457,881 - HGI48_RS02090 0.42 +1.4 457,881 - +1.2 457,881 - HGI48_RS02090 0.42 +0.7 457,898 - HGI48_RS02090 0.44 -0.8 457,976 - +1.2 458,124 + HGI48_RS02090 0.73 -0.3 458,125 - HGI48_RS02090 0.73 +0.5 458,125 - HGI48_RS02090 0.73 -2.3 458,125 - HGI48_RS02090 0.73 -0.3 458,232 - HGI48_RS02090 0.87 -1.0 458,232 - HGI48_RS02090 0.87 -0.1 458,269 - -0.1 458,278 + -1.0 458,279 - +0.1 458,279 - +0.2 458,285 + +1.1 458,298 + -0.3 458,299 - +0.0 458,299 - -0.8 458,299 - +0.2 458,351 - +2.5 458,351 - +2.0 458,355 + -1.6 458,356 - +0.1 458,371 - -1.6 458,371 - +1.4 458,375 + -0.1 458,376 - -0.1 458,379 + +1.2 458,379 + +0.0 458,380 - -1.0 458,380 - -0.5 458,380 - +1.1 458,380 - -2.4
Or see this region's nucleotide sequence