Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02060 and HGI48_RS02065 are separated by 22 nucleotides HGI48_RS02065 and HGI48_RS02070 are separated by 406 nucleotides
HGI48_RS02060: HGI48_RS02060 - type II toxin-antitoxin system HipA family toxin, at 451,784 to 452,839
_RS02060
HGI48_RS02065: HGI48_RS02065 - DUF1778 domain-containing protein, at 452,862 to 453,134
_RS02065
HGI48_RS02070: HGI48_RS02070 - hypothetical protein, at 453,541 to 454,929
_RS02070
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 451.872 kb on - strand at 451.903 kb on + strand, within HGI48_RS02060 at 451.903 kb on + strand at 451.904 kb on - strand, within HGI48_RS02060 at 451.904 kb on - strand, within HGI48_RS02060 at 451.904 kb on - strand at 451.904 kb on - strand, within HGI48_RS02060 at 451.904 kb on - strand at 451.905 kb on + strand at 451.905 kb on + strand, within HGI48_RS02060 at 451.905 kb on + strand, within HGI48_RS02060 at 451.905 kb on + strand, within HGI48_RS02060 at 451.906 kb on - strand, within HGI48_RS02060 at 451.906 kb on - strand, within HGI48_RS02060 at 451.906 kb on - strand, within HGI48_RS02060 at 451.913 kb on - strand, within HGI48_RS02060 at 451.913 kb on - strand, within HGI48_RS02060 at 451.915 kb on + strand, within HGI48_RS02060 at 451.916 kb on - strand, within HGI48_RS02060 at 451.916 kb on - strand, within HGI48_RS02060 at 451.916 kb on - strand, within HGI48_RS02060 at 451.929 kb on + strand, within HGI48_RS02060 at 451.930 kb on - strand, within HGI48_RS02060 at 451.952 kb on - strand at 452.002 kb on - strand, within HGI48_RS02060 at 452.038 kb on + strand, within HGI48_RS02060 at 452.038 kb on + strand, within HGI48_RS02060 at 452.038 kb on + strand, within HGI48_RS02060 at 452.039 kb on - strand, within HGI48_RS02060 at 452.039 kb on - strand, within HGI48_RS02060 at 452.039 kb on - strand at 452.041 kb on + strand, within HGI48_RS02060 at 452.042 kb on - strand, within HGI48_RS02060 at 452.056 kb on + strand, within HGI48_RS02060 at 452.067 kb on + strand, within HGI48_RS02060 at 452.068 kb on - strand, within HGI48_RS02060 at 452.089 kb on + strand, within HGI48_RS02060 at 452.090 kb on - strand, within HGI48_RS02060 at 452.090 kb on - strand, within HGI48_RS02060 at 452.102 kb on - strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand, within HGI48_RS02060 at 452.107 kb on + strand at 452.108 kb on - strand, within HGI48_RS02060 at 452.108 kb on - strand at 452.130 kb on + strand, within HGI48_RS02060 at 452.278 kb on + strand, within HGI48_RS02060 at 452.278 kb on + strand, within HGI48_RS02060 at 452.278 kb on + strand at 452.278 kb on + strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand, within HGI48_RS02060 at 452.279 kb on - strand at 452.338 kb on + strand, within HGI48_RS02060 at 452.358 kb on + strand at 452.358 kb on + strand, within HGI48_RS02060 at 452.358 kb on + strand, within HGI48_RS02060 at 452.497 kb on + strand, within HGI48_RS02060 at 452.497 kb on + strand, within HGI48_RS02060 at 452.497 kb on + strand, within HGI48_RS02060 at 452.498 kb on - strand, within HGI48_RS02060 at 452.498 kb on - strand, within HGI48_RS02060 at 452.498 kb on - strand, within HGI48_RS02060 at 452.507 kb on + strand, within HGI48_RS02060 at 452.508 kb on - strand, within HGI48_RS02060 at 452.508 kb on - strand, within HGI48_RS02060 at 452.518 kb on - strand, within HGI48_RS02060 at 452.548 kb on + strand, within HGI48_RS02060 at 452.602 kb on + strand, within HGI48_RS02060 at 452.602 kb on + strand, within HGI48_RS02060 at 452.606 kb on + strand, within HGI48_RS02060 at 452.606 kb on + strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.607 kb on - strand, within HGI48_RS02060 at 452.689 kb on + strand, within HGI48_RS02060 at 452.690 kb on - strand at 452.690 kb on - strand at 452.690 kb on - strand, within HGI48_RS02060 at 452.690 kb on - strand, within HGI48_RS02060 at 452.704 kb on + strand, within HGI48_RS02060 at 452.704 kb on + strand, within HGI48_RS02060 at 452.705 kb on - strand, within HGI48_RS02060 at 452.725 kb on + strand, within HGI48_RS02060 at 452.737 kb on - strand at 452.766 kb on + strand at 452.766 kb on + strand at 452.794 kb on + strand at 452.794 kb on + strand at 452.795 kb on - strand at 452.833 kb on + strand at 452.833 kb on + strand at 452.834 kb on - strand at 452.834 kb on - strand at 452.838 kb on - strand at 452.890 kb on - strand, within HGI48_RS02065 at 452.909 kb on + strand, within HGI48_RS02065 at 452.950 kb on + strand, within HGI48_RS02065 at 452.950 kb on + strand at 452.951 kb on - strand, within HGI48_RS02065 at 452.951 kb on - strand, within HGI48_RS02065 at 452.951 kb on - strand, within HGI48_RS02065 at 452.951 kb on - strand, within HGI48_RS02065 at 452.981 kb on + strand, within HGI48_RS02065 at 452.982 kb on - strand, within HGI48_RS02065 at 453.027 kb on - strand, within HGI48_RS02065 at 453.101 kb on + strand, within HGI48_RS02065 at 453.101 kb on + strand, within HGI48_RS02065 at 453.102 kb on - strand, within HGI48_RS02065 at 453.104 kb on + strand, within HGI48_RS02065 at 453.150 kb on + strand at 453.157 kb on + strand at 453.158 kb on - strand at 453.200 kb on - strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.202 kb on + strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.203 kb on - strand at 453.253 kb on - strand at 453.275 kb on + strand at 453.276 kb on - strand at 453.280 kb on + strand at 453.281 kb on - strand at 453.281 kb on - strand at 453.281 kb on - strand at 453.307 kb on - strand at 453.369 kb on + strand at 453.369 kb on + strand at 453.394 kb on + strand at 453.394 kb on + strand at 453.394 kb on + strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.401 kb on + strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.402 kb on - strand at 453.424 kb on + strand at 453.454 kb on + strand at 453.606 kb on - strand at 453.614 kb on + strand at 453.614 kb on + strand at 453.615 kb on - strand at 453.617 kb on + strand at 453.618 kb on - strand at 453.636 kb on + strand at 453.636 kb on + strand at 453.636 kb on + strand at 453.637 kb on - strand at 453.692 kb on + strand, within HGI48_RS02070 at 453.692 kb on + strand, within HGI48_RS02070 at 453.712 kb on + strand, within HGI48_RS02070 at 453.713 kb on - strand, within HGI48_RS02070 at 453.713 kb on - strand, within HGI48_RS02070 at 453.713 kb on - strand, within HGI48_RS02070 at 453.748 kb on + strand, within HGI48_RS02070 at 453.749 kb on - strand, within HGI48_RS02070 at 453.749 kb on - strand, within HGI48_RS02070 at 453.749 kb on - strand, within HGI48_RS02070 at 453.751 kb on + strand, within HGI48_RS02070 at 453.751 kb on + strand, within HGI48_RS02070 at 454.003 kb on + strand, within HGI48_RS02070 at 454.004 kb on - strand, within HGI48_RS02070
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 451,872 - -1.4 451,903 + HGI48_RS02060 0.11 +1.3 451,903 + +2.3 451,904 - HGI48_RS02060 0.11 -0.0 451,904 - HGI48_RS02060 0.11 -1.1 451,904 - -0.8 451,904 - HGI48_RS02060 0.11 +0.5 451,904 - +0.7 451,905 + -0.8 451,905 + HGI48_RS02060 0.11 +0.1 451,905 + HGI48_RS02060 0.11 -1.1 451,905 + HGI48_RS02060 0.11 +0.0 451,906 - HGI48_RS02060 0.12 +0.7 451,906 - HGI48_RS02060 0.12 +0.4 451,906 - HGI48_RS02060 0.12 +1.3 451,913 - HGI48_RS02060 0.12 +1.4 451,913 - HGI48_RS02060 0.12 -1.6 451,915 + HGI48_RS02060 0.12 -0.3 451,916 - HGI48_RS02060 0.12 +0.7 451,916 - HGI48_RS02060 0.12 +0.0 451,916 - HGI48_RS02060 0.12 -1.3 451,929 + HGI48_RS02060 0.14 +1.2 451,930 - HGI48_RS02060 0.14 -0.8 451,952 - +0.7 452,002 - HGI48_RS02060 0.21 -1.6 452,038 + HGI48_RS02060 0.24 -0.4 452,038 + HGI48_RS02060 0.24 -0.3 452,038 + HGI48_RS02060 0.24 -0.3 452,039 - HGI48_RS02060 0.24 -1.0 452,039 - HGI48_RS02060 0.24 +0.7 452,039 - -0.8 452,041 + HGI48_RS02060 0.24 +1.0 452,042 - HGI48_RS02060 0.24 -0.5 452,056 + HGI48_RS02060 0.26 -1.6 452,067 + HGI48_RS02060 0.27 -2.8 452,068 - HGI48_RS02060 0.27 +0.7 452,089 + HGI48_RS02060 0.29 +0.0 452,090 - HGI48_RS02060 0.29 -1.8 452,090 - HGI48_RS02060 0.29 +0.3 452,102 - HGI48_RS02060 0.30 -0.4 452,107 + HGI48_RS02060 0.31 -1.6 452,107 + HGI48_RS02060 0.31 -1.4 452,107 + HGI48_RS02060 0.31 +1.2 452,107 + +0.2 452,107 + HGI48_RS02060 0.31 -1.6 452,107 + HGI48_RS02060 0.31 -0.3 452,107 + HGI48_RS02060 0.31 -1.3 452,107 + +0.7 452,108 - HGI48_RS02060 0.31 -1.6 452,108 - -0.3 452,130 + HGI48_RS02060 0.33 +0.2 452,278 + HGI48_RS02060 0.47 -1.4 452,278 + HGI48_RS02060 0.47 +0.7 452,278 + -0.3 452,278 + HGI48_RS02060 0.47 -0.3 452,279 - HGI48_RS02060 0.47 +0.7 452,279 - HGI48_RS02060 0.47 -0.6 452,279 - HGI48_RS02060 0.47 -0.1 452,279 - HGI48_RS02060 0.47 -0.6 452,279 - HGI48_RS02060 0.47 -2.0 452,279 - -0.3 452,338 + HGI48_RS02060 0.52 -0.1 452,358 + +0.2 452,358 + HGI48_RS02060 0.54 -0.5 452,358 + HGI48_RS02060 0.54 -1.1 452,497 + HGI48_RS02060 0.68 -0.6 452,497 + HGI48_RS02060 0.68 +0.1 452,497 + HGI48_RS02060 0.68 +0.2 452,498 - HGI48_RS02060 0.68 -0.1 452,498 - HGI48_RS02060 0.68 -0.8 452,498 - HGI48_RS02060 0.68 -0.8 452,507 + HGI48_RS02060 0.68 -0.8 452,508 - HGI48_RS02060 0.69 -2.1 452,508 - HGI48_RS02060 0.69 +0.3 452,518 - HGI48_RS02060 0.70 -0.1 452,548 + HGI48_RS02060 0.72 -0.8 452,602 + HGI48_RS02060 0.77 -0.1 452,602 + HGI48_RS02060 0.77 -0.3 452,606 + HGI48_RS02060 0.78 +0.0 452,606 + HGI48_RS02060 0.78 +0.1 452,607 - HGI48_RS02060 0.78 +0.9 452,607 - HGI48_RS02060 0.78 -2.1 452,607 - HGI48_RS02060 0.78 +0.7 452,607 - HGI48_RS02060 0.78 +0.1 452,607 - HGI48_RS02060 0.78 -0.3 452,689 + HGI48_RS02060 0.86 +0.4 452,690 - +1.7 452,690 - +1.7 452,690 - HGI48_RS02060 0.86 -0.1 452,690 - HGI48_RS02060 0.86 +0.4 452,704 + HGI48_RS02060 0.87 +0.3 452,704 + HGI48_RS02060 0.87 +0.3 452,705 - HGI48_RS02060 0.87 +0.3 452,725 + HGI48_RS02060 0.89 -2.1 452,737 - +0.2 452,766 + +0.7 452,766 + +0.5 452,794 + +0.3 452,794 + -1.0 452,795 - -0.8 452,833 + +0.7 452,833 + +0.5 452,834 - -0.5 452,834 - +0.4 452,838 - +1.0 452,890 - HGI48_RS02065 0.10 -0.3 452,909 + HGI48_RS02065 0.17 -1.8 452,950 + HGI48_RS02065 0.32 +0.7 452,950 + -0.8 452,951 - HGI48_RS02065 0.33 -1.6 452,951 - HGI48_RS02065 0.33 +0.2 452,951 - HGI48_RS02065 0.33 +0.0 452,951 - HGI48_RS02065 0.33 +0.2 452,981 + HGI48_RS02065 0.44 +1.7 452,982 - HGI48_RS02065 0.44 +0.4 453,027 - HGI48_RS02065 0.60 -1.8 453,101 + HGI48_RS02065 0.88 +1.9 453,101 + HGI48_RS02065 0.88 -0.3 453,102 - HGI48_RS02065 0.88 -0.3 453,104 + HGI48_RS02065 0.89 -0.1 453,150 + -0.9 453,157 + -0.3 453,158 - +0.2 453,200 - -0.1 453,202 + +0.2 453,202 + -1.1 453,202 + -0.8 453,202 + +0.2 453,202 + +0.2 453,202 + -0.8 453,203 - -1.1 453,203 - -0.8 453,203 - -0.6 453,203 - -0.8 453,203 - +0.4 453,203 - -2.4 453,203 - -0.8 453,253 - +0.9 453,275 + -1.3 453,276 - +0.7 453,280 + +2.6 453,281 - -2.3 453,281 - -0.3 453,281 - -2.2 453,307 - +1.2 453,369 + +1.1 453,369 + +1.3 453,394 + +0.1 453,394 + -0.8 453,394 + -0.5 453,395 - +0.1 453,395 - -2.8 453,395 - +0.7 453,395 - -1.1 453,395 - +0.6 453,395 - +1.9 453,401 + +0.3 453,402 - -2.4 453,402 - +0.1 453,402 - +0.3 453,402 - -1.8 453,402 - -0.8 453,402 - +2.3 453,424 + +1.5 453,454 + -2.4 453,606 - -0.1 453,614 + +0.3 453,614 + +0.2 453,615 - -1.8 453,617 + +0.4 453,618 - -0.4 453,636 + -0.8 453,636 + +0.2 453,636 + -0.6 453,637 - -0.8 453,692 + HGI48_RS02070 0.11 +0.7 453,692 + HGI48_RS02070 0.11 -1.1 453,712 + HGI48_RS02070 0.12 +0.2 453,713 - HGI48_RS02070 0.12 -0.3 453,713 - HGI48_RS02070 0.12 -0.1 453,713 - HGI48_RS02070 0.12 -1.5 453,748 + HGI48_RS02070 0.15 -0.1 453,749 - HGI48_RS02070 0.15 -0.5 453,749 - HGI48_RS02070 0.15 +0.7 453,749 - HGI48_RS02070 0.15 -0.3 453,751 + HGI48_RS02070 0.15 +0.9 453,751 + HGI48_RS02070 0.15 -1.1 454,003 + HGI48_RS02070 0.33 -1.4 454,004 - HGI48_RS02070 0.33 +0.6
Or see this region's nucleotide sequence