Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01980

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01975 and HGI48_RS01980 are separated by 175 nucleotidesHGI48_RS01980 and HGI48_RS01985 are separated by 99 nucleotidesHGI48_RS01985 and HGI48_RS01990 are separated by 118 nucleotidesHGI48_RS01990 and HGI48_RS01995 overlap by 23 nucleotides HGI48_RS01975: HGI48_RS01975 - integrase arm-type DNA-binding domain-containing protein, at 438,156 to 439,412 _RS01975 HGI48_RS01980: HGI48_RS01980 - hypothetical protein, at 439,588 to 440,409 _RS01980 HGI48_RS01985: HGI48_RS01985 - helix-turn-helix transcriptional regulator, at 440,509 to 440,763 _RS01985 HGI48_RS01990: HGI48_RS01990 - helix-turn-helix domain-containing protein, at 440,882 to 441,172 _RS01990 HGI48_RS01995: HGI48_RS01995 - DUF2442 domain-containing protein, at 441,150 to 441,404 _RS01995 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 438.599 kb on - strand, within HGI48_RS01975at 438.599 kb on - strand, within HGI48_RS01975at 438.644 kb on - strand, within HGI48_RS01975at 438.644 kb on - strand, within HGI48_RS01975at 438.674 kb on + strand, within HGI48_RS01975at 438.674 kb on + strand, within HGI48_RS01975at 438.676 kb on + strand, within HGI48_RS01975at 438.677 kb on + strandat 438.678 kb on - strand, within HGI48_RS01975at 438.692 kb on - strand, within HGI48_RS01975at 438.785 kb on + strand, within HGI48_RS01975at 438.785 kb on + strandat 438.786 kb on - strand, within HGI48_RS01975at 438.786 kb on - strand, within HGI48_RS01975at 438.786 kb on - strand, within HGI48_RS01975at 438.819 kb on + strandat 438.819 kb on + strand, within HGI48_RS01975at 438.819 kb on + strand, within HGI48_RS01975at 438.819 kb on + strand, within HGI48_RS01975at 438.820 kb on - strand, within HGI48_RS01975at 438.820 kb on - strand, within HGI48_RS01975at 438.820 kb on - strand, within HGI48_RS01975at 438.820 kb on - strand, within HGI48_RS01975at 438.851 kb on - strandat 438.929 kb on + strand, within HGI48_RS01975at 438.929 kb on + strand, within HGI48_RS01975at 438.929 kb on + strand, within HGI48_RS01975at 438.929 kb on + strand, within HGI48_RS01975at 438.929 kb on + strand, within HGI48_RS01975at 438.929 kb on + strandat 438.929 kb on + strand, within HGI48_RS01975at 438.930 kb on - strandat 438.971 kb on - strandat 439.012 kb on + strand, within HGI48_RS01975at 439.013 kb on - strand, within HGI48_RS01975at 439.013 kb on - strand, within HGI48_RS01975at 439.013 kb on - strand, within HGI48_RS01975at 439.056 kb on - strand, within HGI48_RS01975at 439.056 kb on - strand, within HGI48_RS01975at 439.056 kb on - strandat 439.056 kb on - strand, within HGI48_RS01975at 439.084 kb on + strandat 439.084 kb on + strand, within HGI48_RS01975at 439.136 kb on + strand, within HGI48_RS01975at 439.136 kb on + strand, within HGI48_RS01975at 439.136 kb on + strand, within HGI48_RS01975at 439.137 kb on - strand, within HGI48_RS01975at 439.137 kb on - strand, within HGI48_RS01975at 439.296 kb on + strandat 439.296 kb on + strandat 439.296 kb on + strandat 439.296 kb on + strandat 439.297 kb on - strandat 439.297 kb on - strandat 439.298 kb on + strandat 439.298 kb on + strandat 439.298 kb on + strandat 439.299 kb on - strandat 439.299 kb on - strandat 439.299 kb on - strandat 439.299 kb on - strandat 439.316 kb on + strandat 439.380 kb on + strandat 439.380 kb on + strandat 439.381 kb on - strandat 439.427 kb on + strandat 439.439 kb on + strandat 439.463 kb on - strandat 439.637 kb on + strandat 439.639 kb on + strandat 439.700 kb on + strand, within HGI48_RS01980at 439.701 kb on - strand, within HGI48_RS01980at 439.739 kb on + strand, within HGI48_RS01980at 439.754 kb on + strand, within HGI48_RS01980at 439.886 kb on + strand, within HGI48_RS01980at 439.898 kb on - strand, within HGI48_RS01980at 439.898 kb on - strand, within HGI48_RS01980at 439.912 kb on - strand, within HGI48_RS01980at 439.956 kb on - strand, within HGI48_RS01980at 440.163 kb on - strand, within HGI48_RS01980at 440.163 kb on - strand, within HGI48_RS01980at 440.199 kb on + strand, within HGI48_RS01980at 440.200 kb on - strand, within HGI48_RS01980at 440.230 kb on - strand, within HGI48_RS01980at 440.430 kb on + strandat 440.430 kb on + strandat 440.431 kb on - strandat 440.449 kb on + strandat 440.456 kb on - strandat 440.492 kb on + strandat 440.492 kb on + strandat 440.495 kb on + strandat 440.495 kb on + strandat 440.495 kb on + strandat 440.496 kb on - strandat 440.502 kb on + strandat 440.503 kb on - strandat 440.503 kb on - strandat 440.503 kb on - strandat 440.527 kb on - strandat 440.589 kb on + strand, within HGI48_RS01985at 440.590 kb on - strand, within HGI48_RS01985at 440.590 kb on - strand, within HGI48_RS01985at 440.638 kb on + strand, within HGI48_RS01985at 440.638 kb on + strand, within HGI48_RS01985at 440.638 kb on + strand, within HGI48_RS01985at 440.638 kb on + strand, within HGI48_RS01985at 440.638 kb on + strand, within HGI48_RS01985at 440.639 kb on - strand, within HGI48_RS01985at 440.639 kb on - strand, within HGI48_RS01985at 440.640 kb on + strand, within HGI48_RS01985at 440.651 kb on + strand, within HGI48_RS01985at 440.651 kb on + strand, within HGI48_RS01985at 440.651 kb on + strand, within HGI48_RS01985at 440.651 kb on + strand, within HGI48_RS01985at 440.651 kb on + strand, within HGI48_RS01985at 440.651 kb on + strand, within HGI48_RS01985at 440.651 kb on + strand, within HGI48_RS01985at 440.651 kb on + strand, within HGI48_RS01985at 440.651 kb on + strand, within HGI48_RS01985at 440.746 kb on + strandat 440.746 kb on + strandat 440.747 kb on - strandat 440.758 kb on + strandat 440.758 kb on + strandat 440.758 kb on + strandat 440.856 kb on + strandat 440.857 kb on - strandat 440.857 kb on - strandat 440.869 kb on - strandat 440.881 kb on + strandat 440.914 kb on + strand, within HGI48_RS01990at 440.915 kb on - strand, within HGI48_RS01990at 440.915 kb on - strand, within HGI48_RS01990at 440.932 kb on + strand, within HGI48_RS01990at 440.932 kb on + strand, within HGI48_RS01990at 440.932 kb on + strand, within HGI48_RS01990at 440.944 kb on + strandat 440.944 kb on + strand, within HGI48_RS01990at 440.945 kb on - strand, within HGI48_RS01990at 440.945 kb on - strand, within HGI48_RS01990at 441.105 kb on + strand, within HGI48_RS01990at 441.105 kb on + strand, within HGI48_RS01990at 441.106 kb on - strand, within HGI48_RS01990at 441.214 kb on + strand, within HGI48_RS01995at 441.214 kb on + strand, within HGI48_RS01995at 441.238 kb on + strand, within HGI48_RS01995at 441.238 kb on + strandat 441.238 kb on + strand, within HGI48_RS01995at 441.238 kb on + strand, within HGI48_RS01995at 441.238 kb on + strand, within HGI48_RS01995at 441.239 kb on - strand, within HGI48_RS01995at 441.239 kb on - strandat 441.239 kb on - strand, within HGI48_RS01995at 441.243 kb on - strand, within HGI48_RS01995at 441.296 kb on + strandat 441.297 kb on - strand, within HGI48_RS01995at 441.308 kb on + strand, within HGI48_RS01995at 441.308 kb on + strand, within HGI48_RS01995at 441.323 kb on + strand, within HGI48_RS01995at 441.323 kb on + strand, within HGI48_RS01995at 441.324 kb on - strandat 441.324 kb on - strand, within HGI48_RS01995at 441.325 kb on + strand, within HGI48_RS01995at 441.325 kb on + strand, within HGI48_RS01995at 441.325 kb on + strandat 441.325 kb on + strand, within HGI48_RS01995at 441.325 kb on + strand, within HGI48_RS01995at 441.325 kb on + strand, within HGI48_RS01995at 441.325 kb on + strand, within HGI48_RS01995at 441.325 kb on + strand, within HGI48_RS01995at 441.325 kb on + strand, within HGI48_RS01995at 441.325 kb on + strand, within HGI48_RS01995at 441.326 kb on - strand, within HGI48_RS01995at 441.326 kb on - strand, within HGI48_RS01995at 441.326 kb on - strand, within HGI48_RS01995at 441.326 kb on - strand, within HGI48_RS01995at 441.326 kb on - strand, within HGI48_RS01995at 441.327 kb on + strand, within HGI48_RS01995at 441.328 kb on - strand, within HGI48_RS01995at 441.328 kb on - strandat 441.328 kb on - strandat 441.338 kb on + strand, within HGI48_RS01995at 441.338 kb on + strand, within HGI48_RS01995at 441.338 kb on + strand, within HGI48_RS01995at 441.339 kb on - strand, within HGI48_RS01995at 441.369 kb on + strand, within HGI48_RS01995at 441.390 kb on - strandat 441.390 kb on - strandat 441.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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438,599 - HGI48_RS01975 0.35 -1.2
438,599 - HGI48_RS01975 0.35 -0.1
438,644 - HGI48_RS01975 0.39 +0.2
438,644 - HGI48_RS01975 0.39 -0.3
438,674 + HGI48_RS01975 0.41 -2.0
438,674 + HGI48_RS01975 0.41 +1.3
438,676 + HGI48_RS01975 0.41 +0.1
438,677 + +2.8
438,678 - HGI48_RS01975 0.42 -1.8
438,692 - HGI48_RS01975 0.43 -0.4
438,785 + HGI48_RS01975 0.50 +0.1
438,785 + -0.8
438,786 - HGI48_RS01975 0.50 +0.2
438,786 - HGI48_RS01975 0.50 -2.9
438,786 - HGI48_RS01975 0.50 -1.2
438,819 + -0.8
438,819 + HGI48_RS01975 0.53 -0.5
438,819 + HGI48_RS01975 0.53 +0.0
438,819 + HGI48_RS01975 0.53 -0.2
438,820 - HGI48_RS01975 0.53 -0.4
438,820 - HGI48_RS01975 0.53 +0.8
438,820 - HGI48_RS01975 0.53 +0.8
438,820 - HGI48_RS01975 0.53 -0.9
438,851 - +0.2
438,929 + HGI48_RS01975 0.61 +0.2
438,929 + HGI48_RS01975 0.61 +1.8
438,929 + HGI48_RS01975 0.61 -0.5
438,929 + HGI48_RS01975 0.61 -0.7
438,929 + HGI48_RS01975 0.61 -0.4
438,929 + +1.2
438,929 + HGI48_RS01975 0.61 -0.2
438,930 - -0.8
438,971 - -0.2
439,012 + HGI48_RS01975 0.68 -1.8
439,013 - HGI48_RS01975 0.68 -0.2
439,013 - HGI48_RS01975 0.68 -0.5
439,013 - HGI48_RS01975 0.68 -0.8
439,056 - HGI48_RS01975 0.72 -0.6
439,056 - HGI48_RS01975 0.72 +0.8
439,056 - -0.8
439,056 - HGI48_RS01975 0.72 -1.0
439,084 + +1.2
439,084 + HGI48_RS01975 0.74 +0.8
439,136 + HGI48_RS01975 0.78 +1.0
439,136 + HGI48_RS01975 0.78 -0.4
439,136 + HGI48_RS01975 0.78 -0.6
439,137 - HGI48_RS01975 0.78 +1.0
439,137 - HGI48_RS01975 0.78 -1.6
439,296 + -1.6
439,296 + -1.0
439,296 + -1.5
439,296 + -1.0
439,297 - -3.6
439,297 - +0.8
439,298 + +0.3
439,298 + -1.0
439,298 + +1.1
439,299 - +0.1
439,299 - -2.2
439,299 - -0.8
439,299 - +0.8
439,316 + -1.6
439,380 + +1.1
439,380 + -0.2
439,381 - +0.8
439,427 + +2.5
439,439 + -0.4
439,463 - -0.8
439,637 + -1.2
439,639 + +0.5
439,700 + HGI48_RS01980 0.14 +1.3
439,701 - HGI48_RS01980 0.14 -0.4
439,739 + HGI48_RS01980 0.18 -1.6
439,754 + HGI48_RS01980 0.20 +1.0
439,886 + HGI48_RS01980 0.36 -0.7
439,898 - HGI48_RS01980 0.38 +0.6
439,898 - HGI48_RS01980 0.38 +1.0
439,912 - HGI48_RS01980 0.39 -0.9
439,956 - HGI48_RS01980 0.45 +2.0
440,163 - HGI48_RS01980 0.70 +1.2
440,163 - HGI48_RS01980 0.70 +0.4
440,199 + HGI48_RS01980 0.74 -0.8
440,200 - HGI48_RS01980 0.74 +0.3
440,230 - HGI48_RS01980 0.78 -1.0
440,430 + +3.8
440,430 + -0.7
440,431 - +0.8
440,449 + -0.2
440,456 - -0.8
440,492 + -0.4
440,492 + -0.6
440,495 + -0.2
440,495 + +0.3
440,495 + +1.5
440,496 - +0.5
440,502 + +0.5
440,503 - -0.2
440,503 - -0.2
440,503 - -0.2
440,527 - -1.2
440,589 + HGI48_RS01985 0.31 +1.3
440,590 - HGI48_RS01985 0.32 -1.0
440,590 - HGI48_RS01985 0.32 +0.5
440,638 + HGI48_RS01985 0.51 +4.1
440,638 + HGI48_RS01985 0.51 +3.5
440,638 + HGI48_RS01985 0.51 +3.6
440,638 + HGI48_RS01985 0.51 +1.8
440,638 + HGI48_RS01985 0.51 +4.2
440,639 - HGI48_RS01985 0.51 -0.4
440,639 - HGI48_RS01985 0.51 -1.0
440,640 + HGI48_RS01985 0.51 +3.4
440,651 + HGI48_RS01985 0.56 +5.2
440,651 + HGI48_RS01985 0.56 +4.2
440,651 + HGI48_RS01985 0.56 +4.3
440,651 + HGI48_RS01985 0.56 +5.9
440,651 + HGI48_RS01985 0.56 +2.6
440,651 + HGI48_RS01985 0.56 +5.7
440,651 + HGI48_RS01985 0.56 +2.7
440,651 + HGI48_RS01985 0.56 +5.6
440,651 + HGI48_RS01985 0.56 +5.6
440,746 + +0.8
440,746 + +5.6
440,747 - +1.8
440,758 + +4.2
440,758 + +3.9
440,758 + +3.9
440,856 + +0.3
440,857 - -0.3
440,857 - -0.1
440,869 - -1.0
440,881 + +0.8
440,914 + HGI48_RS01990 0.11 +0.0
440,915 - HGI48_RS01990 0.11 -0.9
440,915 - HGI48_RS01990 0.11 -0.2
440,932 + HGI48_RS01990 0.17 +0.8
440,932 + HGI48_RS01990 0.17 +0.3
440,932 + HGI48_RS01990 0.17 -2.2
440,944 + +1.5
440,944 + HGI48_RS01990 0.21 +0.0
440,945 - HGI48_RS01990 0.22 -1.0
440,945 - HGI48_RS01990 0.22 +1.6
441,105 + HGI48_RS01990 0.77 +0.3
441,105 + HGI48_RS01990 0.77 +0.1
441,106 - HGI48_RS01990 0.77 -0.0
441,214 + HGI48_RS01995 0.25 -0.5
441,214 + HGI48_RS01995 0.25 -0.6
441,238 + HGI48_RS01995 0.35 -0.7
441,238 + -0.8
441,238 + HGI48_RS01995 0.35 -1.1
441,238 + HGI48_RS01995 0.35 -1.4
441,238 + HGI48_RS01995 0.35 -0.3
441,239 - HGI48_RS01995 0.35 +0.3
441,239 - -0.8
441,239 - HGI48_RS01995 0.35 -2.0
441,243 - HGI48_RS01995 0.36 -0.2
441,296 + +1.8
441,297 - HGI48_RS01995 0.58 +1.6
441,308 + HGI48_RS01995 0.62 +0.2
441,308 + HGI48_RS01995 0.62 +0.4
441,323 + HGI48_RS01995 0.68 -1.2
441,323 + HGI48_RS01995 0.68 +0.3
441,324 - +0.8
441,324 - HGI48_RS01995 0.68 -0.1
441,325 + HGI48_RS01995 0.69 +0.8
441,325 + HGI48_RS01995 0.69 -0.2
441,325 + +2.5
441,325 + HGI48_RS01995 0.69 -1.7
441,325 + HGI48_RS01995 0.69 +0.1
441,325 + HGI48_RS01995 0.69 +0.8
441,325 + HGI48_RS01995 0.69 -2.6
441,325 + HGI48_RS01995 0.69 +0.1
441,325 + HGI48_RS01995 0.69 -0.6
441,325 + HGI48_RS01995 0.69 -0.2
441,326 - HGI48_RS01995 0.69 -1.6
441,326 - HGI48_RS01995 0.69 -0.1
441,326 - HGI48_RS01995 0.69 -1.2
441,326 - HGI48_RS01995 0.69 +0.9
441,326 - HGI48_RS01995 0.69 +0.7
441,327 + HGI48_RS01995 0.69 +0.4
441,328 - HGI48_RS01995 0.70 -0.6
441,328 - +1.8
441,328 - +0.8
441,338 + HGI48_RS01995 0.74 -0.4
441,338 + HGI48_RS01995 0.74 -0.8
441,338 + HGI48_RS01995 0.74 -1.6
441,339 - HGI48_RS01995 0.74 +0.8
441,369 + HGI48_RS01995 0.86 -1.6
441,390 - -1.2
441,390 - -0.8
441,390 - -2.2

Or see this region's nucleotide sequence