Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01785

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01780 and HGI48_RS01785 are separated by 498 nucleotidesHGI48_RS01785 and HGI48_RS01790 are separated by 9 nucleotides HGI48_RS01780: HGI48_RS01780 - aminoimidazole riboside kinase, at 394,753 to 395,676 _RS01780 HGI48_RS01785: HGI48_RS01785 - MFS transporter, at 396,175 to 397,389 _RS01785 HGI48_RS01790: HGI48_RS01790 - dTDP-4-dehydrorhamnose 3,5-epimerase family protein, at 397,399 to 398,694 _RS01790 Position (kb) 396 397 398Strain fitness (log2 ratio) -2 -1 0 1 2 3at 395.202 kb on + strand, within HGI48_RS01780at 395.248 kb on + strand, within HGI48_RS01780at 395.249 kb on - strand, within HGI48_RS01780at 395.335 kb on + strandat 395.335 kb on + strand, within HGI48_RS01780at 395.460 kb on - strand, within HGI48_RS01780at 395.460 kb on - strand, within HGI48_RS01780at 395.460 kb on - strand, within HGI48_RS01780at 395.460 kb on - strandat 395.663 kb on - strandat 395.663 kb on - strandat 395.663 kb on - strandat 395.667 kb on + strandat 395.667 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.677 kb on - strandat 395.677 kb on - strandat 395.680 kb on + strandat 395.680 kb on + strandat 395.681 kb on - strandat 395.681 kb on - strandat 395.681 kb on - strandat 395.681 kb on - strandat 395.698 kb on + strandat 395.699 kb on - strandat 395.714 kb on - strandat 395.717 kb on + strandat 395.718 kb on - strandat 395.781 kb on + strandat 395.825 kb on + strandat 395.826 kb on - strandat 395.831 kb on + strandat 395.921 kb on + strandat 396.021 kb on + strandat 396.021 kb on + strandat 396.021 kb on + strandat 396.040 kb on - strandat 396.040 kb on - strandat 396.098 kb on + strandat 396.098 kb on + strandat 396.099 kb on - strandat 396.103 kb on + strandat 396.111 kb on + strandat 396.153 kb on + strandat 396.159 kb on + strandat 396.162 kb on + strandat 396.163 kb on - strandat 396.176 kb on + strandat 396.176 kb on + strandat 396.177 kb on - strandat 396.177 kb on - strandat 396.177 kb on - strandat 396.177 kb on - strandat 396.177 kb on - strandat 396.181 kb on - strandat 396.275 kb on - strandat 396.313 kb on + strand, within HGI48_RS01785at 396.313 kb on + strand, within HGI48_RS01785at 396.352 kb on + strand, within HGI48_RS01785at 396.406 kb on - strand, within HGI48_RS01785at 396.410 kb on - strand, within HGI48_RS01785at 396.531 kb on + strand, within HGI48_RS01785at 396.544 kb on + strand, within HGI48_RS01785at 396.578 kb on + strandat 396.579 kb on - strand, within HGI48_RS01785at 396.628 kb on + strand, within HGI48_RS01785at 396.714 kb on + strand, within HGI48_RS01785at 396.715 kb on - strand, within HGI48_RS01785at 396.946 kb on - strand, within HGI48_RS01785at 397.081 kb on - strand, within HGI48_RS01785at 397.111 kb on + strand, within HGI48_RS01785at 397.210 kb on - strand, within HGI48_RS01785at 397.239 kb on + strand, within HGI48_RS01785at 397.269 kb on - strandat 397.389 kb on + strandat 397.393 kb on + strandat 397.426 kb on - strandat 397.426 kb on - strandat 397.532 kb on + strand, within HGI48_RS01790at 397.575 kb on - strand, within HGI48_RS01790at 397.688 kb on - strand, within HGI48_RS01790at 397.718 kb on - strand, within HGI48_RS01790at 397.718 kb on - strand, within HGI48_RS01790at 397.828 kb on + strand, within HGI48_RS01790at 397.855 kb on + strand, within HGI48_RS01790at 397.884 kb on - strand, within HGI48_RS01790at 397.908 kb on + strand, within HGI48_RS01790at 397.910 kb on + strand, within HGI48_RS01790at 397.911 kb on - strand, within HGI48_RS01790at 397.936 kb on + strand, within HGI48_RS01790at 398.078 kb on - strand, within HGI48_RS01790at 398.233 kb on - strandat 398.304 kb on + strandat 398.337 kb on + strand, within HGI48_RS01790

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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395,202 + HGI48_RS01780 0.49 -2.0
395,248 + HGI48_RS01780 0.54 -1.8
395,249 - HGI48_RS01780 0.54 +0.6
395,335 + +0.8
395,335 + HGI48_RS01780 0.63 +0.1
395,460 - HGI48_RS01780 0.77 +0.8
395,460 - HGI48_RS01780 0.77 +0.3
395,460 - HGI48_RS01780 0.77 -0.2
395,460 - +1.5
395,663 - +0.2
395,663 - -1.2
395,663 - +1.4
395,667 + +0.4
395,667 + +0.8
395,676 + +0.6
395,676 + -0.6
395,677 - +2.8
395,677 - +0.5
395,680 + +0.1
395,680 + -0.1
395,681 - +0.4
395,681 - -1.0
395,681 - -0.6
395,681 - -1.2
395,698 + +1.5
395,699 - +1.5
395,714 - -0.2
395,717 + +0.2
395,718 - -0.4
395,781 + -0.2
395,825 + +0.9
395,826 - -0.0
395,831 + -2.4
395,921 + -2.2
396,021 + +0.2
396,021 + -1.2
396,021 + +0.4
396,040 - +0.8
396,040 - +0.0
396,098 + +1.8
396,098 + -0.3
396,099 - +0.3
396,103 + -0.8
396,111 + -0.3
396,153 + +0.7
396,159 + -0.6
396,162 + -0.2
396,163 - -0.0
396,176 + +1.2
396,176 + +0.9
396,177 - -1.2
396,177 - -0.6
396,177 - -0.5
396,177 - +2.2
396,177 - +0.8
396,181 - -0.1
396,275 - +0.8
396,313 + HGI48_RS01785 0.11 -0.3
396,313 + HGI48_RS01785 0.11 +0.1
396,352 + HGI48_RS01785 0.15 +1.4
396,406 - HGI48_RS01785 0.19 +0.3
396,410 - HGI48_RS01785 0.19 +1.2
396,531 + HGI48_RS01785 0.29 -0.6
396,544 + HGI48_RS01785 0.30 -0.8
396,578 + -0.8
396,579 - HGI48_RS01785 0.33 +0.8
396,628 + HGI48_RS01785 0.37 -1.0
396,714 + HGI48_RS01785 0.44 +1.0
396,715 - HGI48_RS01785 0.44 +0.4
396,946 - HGI48_RS01785 0.63 +0.8
397,081 - HGI48_RS01785 0.75 +2.4
397,111 + HGI48_RS01785 0.77 -0.6
397,210 - HGI48_RS01785 0.85 +0.2
397,239 + HGI48_RS01785 0.88 -0.2
397,269 - -0.2
397,389 + +0.1
397,393 + +1.5
397,426 - -0.2
397,426 - +0.5
397,532 + HGI48_RS01790 0.10 +0.0
397,575 - HGI48_RS01790 0.14 -0.1
397,688 - HGI48_RS01790 0.22 -1.7
397,718 - HGI48_RS01790 0.25 -0.2
397,718 - HGI48_RS01790 0.25 +0.4
397,828 + HGI48_RS01790 0.33 -0.1
397,855 + HGI48_RS01790 0.35 -1.2
397,884 - HGI48_RS01790 0.37 -0.5
397,908 + HGI48_RS01790 0.39 +0.6
397,910 + HGI48_RS01790 0.39 -0.2
397,911 - HGI48_RS01790 0.40 +1.5
397,936 + HGI48_RS01790 0.41 +0.8
398,078 - HGI48_RS01790 0.52 +1.4
398,233 - +0.2
398,304 + +0.8
398,337 + HGI48_RS01790 0.72 +1.3

Or see this region's nucleotide sequence