Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01720 and HGI48_RS01725 are separated by 314 nucleotides HGI48_RS01725 and HGI48_RS01730 are separated by 25 nucleotides HGI48_RS01730 and HGI48_RS01735 are separated by 150 nucleotides
HGI48_RS01720: HGI48_RS01720 - TonB system transport protein ExbD, at 380,258 to 380,677
_RS01720
HGI48_RS01725: HGI48_RS01725 - L-rhamnose mutarotase, at 380,992 to 381,306
_RS01725
HGI48_RS01730: HGI48_RS01730 - L-rhamnose/proton symporter RhaT, at 381,332 to 382,360
_RS01730
HGI48_RS01735: HGI48_RS01735 - L-rhamnose isomerase, at 382,511 to 383,770
_RS01735
Position (kb) 381
382
383 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 380.385 kb on + strand, within HGI48_RS01720 at 380.386 kb on - strand, within HGI48_RS01720 at 380.471 kb on - strand, within HGI48_RS01720 at 380.480 kb on + strand, within HGI48_RS01720 at 380.481 kb on - strand, within HGI48_RS01720 at 380.549 kb on - strand, within HGI48_RS01720 at 380.592 kb on - strand, within HGI48_RS01720 at 380.687 kb on + strand at 380.688 kb on - strand at 380.688 kb on - strand at 380.710 kb on + strand at 380.710 kb on + strand at 380.748 kb on + strand at 380.748 kb on + strand at 380.748 kb on + strand at 380.748 kb on + strand at 380.748 kb on + strand at 380.749 kb on - strand at 380.755 kb on - strand at 380.770 kb on + strand at 380.771 kb on - strand at 380.776 kb on + strand at 380.777 kb on - strand at 380.814 kb on + strand at 380.814 kb on + strand at 380.814 kb on + strand at 380.814 kb on + strand at 380.814 kb on + strand at 380.815 kb on - strand at 380.815 kb on - strand at 380.815 kb on - strand at 380.815 kb on - strand at 380.820 kb on + strand at 380.821 kb on - strand at 380.837 kb on - strand at 380.843 kb on - strand at 380.894 kb on - strand at 380.955 kb on + strand at 380.971 kb on + strand at 380.972 kb on - strand at 380.993 kb on + strand at 380.993 kb on + strand at 380.993 kb on + strand at 380.993 kb on + strand at 380.993 kb on + strand at 380.994 kb on - strand at 380.994 kb on - strand at 380.994 kb on - strand at 380.994 kb on - strand at 381.057 kb on + strand, within HGI48_RS01725 at 381.057 kb on + strand at 381.057 kb on + strand, within HGI48_RS01725 at 381.057 kb on + strand, within HGI48_RS01725 at 381.058 kb on - strand, within HGI48_RS01725 at 381.058 kb on - strand at 381.069 kb on + strand, within HGI48_RS01725 at 381.069 kb on + strand, within HGI48_RS01725 at 381.069 kb on + strand, within HGI48_RS01725 at 381.069 kb on + strand, within HGI48_RS01725 at 381.070 kb on - strand, within HGI48_RS01725 at 381.070 kb on - strand, within HGI48_RS01725 at 381.070 kb on - strand, within HGI48_RS01725 at 381.070 kb on - strand, within HGI48_RS01725 at 381.071 kb on + strand, within HGI48_RS01725 at 381.071 kb on + strand, within HGI48_RS01725 at 381.071 kb on + strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.072 kb on - strand, within HGI48_RS01725 at 381.099 kb on + strand at 381.100 kb on - strand, within HGI48_RS01725 at 381.143 kb on + strand, within HGI48_RS01725 at 381.144 kb on - strand, within HGI48_RS01725 at 381.144 kb on - strand, within HGI48_RS01725 at 381.185 kb on + strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.186 kb on - strand, within HGI48_RS01725 at 381.189 kb on + strand at 381.190 kb on - strand, within HGI48_RS01725 at 381.190 kb on - strand at 381.190 kb on - strand, within HGI48_RS01725 at 381.190 kb on - strand, within HGI48_RS01725 at 381.254 kb on + strand, within HGI48_RS01725 at 381.311 kb on + strand at 381.311 kb on + strand at 381.311 kb on + strand at 381.311 kb on + strand at 381.312 kb on - strand at 381.312 kb on - strand at 381.312 kb on - strand at 381.312 kb on - strand at 381.355 kb on + strand at 381.355 kb on + strand at 381.468 kb on + strand, within HGI48_RS01730 at 381.468 kb on + strand, within HGI48_RS01730 at 381.478 kb on + strand, within HGI48_RS01730 at 381.478 kb on + strand, within HGI48_RS01730 at 381.478 kb on + strand at 381.479 kb on - strand, within HGI48_RS01730 at 381.479 kb on - strand, within HGI48_RS01730 at 381.479 kb on - strand, within HGI48_RS01730 at 381.479 kb on - strand, within HGI48_RS01730 at 381.479 kb on - strand, within HGI48_RS01730 at 381.537 kb on + strand, within HGI48_RS01730 at 381.537 kb on + strand, within HGI48_RS01730 at 381.538 kb on - strand, within HGI48_RS01730 at 381.538 kb on - strand, within HGI48_RS01730 at 381.538 kb on - strand, within HGI48_RS01730 at 381.631 kb on - strand, within HGI48_RS01730 at 381.703 kb on + strand at 381.704 kb on - strand, within HGI48_RS01730 at 381.733 kb on - strand, within HGI48_RS01730 at 381.733 kb on - strand, within HGI48_RS01730 at 381.772 kb on + strand, within HGI48_RS01730 at 381.773 kb on - strand, within HGI48_RS01730 at 381.773 kb on - strand, within HGI48_RS01730 at 381.950 kb on + strand, within HGI48_RS01730 at 381.951 kb on - strand, within HGI48_RS01730 at 381.957 kb on - strand, within HGI48_RS01730 at 381.957 kb on - strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand at 382.070 kb on - strand, within HGI48_RS01730 at 382.070 kb on - strand, within HGI48_RS01730 at 382.070 kb on - strand, within HGI48_RS01730 at 382.070 kb on - strand, within HGI48_RS01730 at 382.070 kb on - strand, within HGI48_RS01730 at 382.078 kb on - strand, within HGI48_RS01730 at 382.096 kb on - strand, within HGI48_RS01730 at 382.096 kb on - strand, within HGI48_RS01730 at 382.160 kb on + strand, within HGI48_RS01730 at 382.160 kb on + strand, within HGI48_RS01730 at 382.160 kb on + strand at 382.160 kb on + strand, within HGI48_RS01730 at 382.194 kb on - strand, within HGI48_RS01730 at 382.194 kb on - strand, within HGI48_RS01730 at 382.194 kb on - strand at 382.296 kb on + strand at 382.296 kb on + strand at 382.297 kb on - strand at 382.297 kb on - strand at 382.297 kb on - strand at 382.297 kb on - strand at 382.297 kb on - strand at 382.361 kb on - strand at 382.361 kb on - strand at 382.361 kb on - strand at 382.361 kb on - strand at 382.361 kb on - strand at 382.377 kb on - strand at 382.394 kb on + strand at 382.394 kb on + strand at 382.394 kb on + strand at 382.401 kb on + strand at 382.401 kb on + strand at 382.438 kb on + strand at 382.439 kb on - strand at 382.439 kb on - strand at 382.512 kb on + strand at 382.512 kb on + strand at 382.603 kb on - strand at 382.603 kb on - strand at 382.710 kb on - strand at 382.809 kb on - strand, within HGI48_RS01735 at 382.809 kb on - strand at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 383.028 kb on + strand, within HGI48_RS01735 at 383.035 kb on + strand, within HGI48_RS01735 at 383.037 kb on + strand, within HGI48_RS01735 at 383.037 kb on + strand, within HGI48_RS01735 at 383.037 kb on + strand, within HGI48_RS01735 at 383.038 kb on - strand at 383.038 kb on - strand, within HGI48_RS01735 at 383.038 kb on - strand, within HGI48_RS01735 at 383.038 kb on - strand, within HGI48_RS01735 at 383.038 kb on - strand, within HGI48_RS01735 at 383.061 kb on + strand, within HGI48_RS01735 at 383.061 kb on + strand, within HGI48_RS01735 at 383.062 kb on - strand, within HGI48_RS01735 at 383.062 kb on - strand, within HGI48_RS01735 at 383.221 kb on + strand, within HGI48_RS01735 at 383.221 kb on + strand, within HGI48_RS01735 at 383.222 kb on - strand, within HGI48_RS01735 at 383.259 kb on + strand, within HGI48_RS01735 at 383.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 380,385 + HGI48_RS01720 0.30 -0.2 380,386 - HGI48_RS01720 0.30 -0.2 380,471 - HGI48_RS01720 0.51 -0.6 380,480 + HGI48_RS01720 0.53 -0.1 380,481 - HGI48_RS01720 0.53 -0.5 380,549 - HGI48_RS01720 0.69 -0.2 380,592 - HGI48_RS01720 0.80 +0.9 380,687 + +0.2 380,688 - +0.1 380,688 - +0.1 380,710 + -0.2 380,710 + +0.2 380,748 + -0.2 380,748 + -1.0 380,748 + -0.4 380,748 + +0.0 380,748 + -0.5 380,749 - +0.4 380,755 - -0.1 380,770 + +0.0 380,771 - -0.2 380,776 + +0.4 380,777 - -1.8 380,814 + -0.5 380,814 + -2.0 380,814 + +0.4 380,814 + +0.1 380,814 + -0.4 380,815 - +0.3 380,815 - -0.8 380,815 - +0.8 380,815 - +0.5 380,820 + +0.1 380,821 - +0.5 380,837 - +0.4 380,843 - +0.6 380,894 - +0.8 380,955 + -1.2 380,971 + -0.2 380,972 - +0.5 380,993 + -0.5 380,993 + +0.5 380,993 + -0.8 380,993 + -0.4 380,993 + +1.3 380,994 - -1.5 380,994 - +0.4 380,994 - -0.4 380,994 - +0.6 381,057 + HGI48_RS01725 0.21 -1.4 381,057 + +1.2 381,057 + HGI48_RS01725 0.21 +0.3 381,057 + HGI48_RS01725 0.21 -0.2 381,058 - HGI48_RS01725 0.21 -0.7 381,058 - +0.2 381,069 + HGI48_RS01725 0.24 +0.5 381,069 + HGI48_RS01725 0.24 +0.2 381,069 + HGI48_RS01725 0.24 -0.3 381,069 + HGI48_RS01725 0.24 -0.0 381,070 - HGI48_RS01725 0.25 +0.5 381,070 - HGI48_RS01725 0.25 +0.0 381,070 - HGI48_RS01725 0.25 -0.5 381,070 - HGI48_RS01725 0.25 +0.1 381,071 + HGI48_RS01725 0.25 -0.2 381,071 + HGI48_RS01725 0.25 -2.4 381,071 + HGI48_RS01725 0.25 -0.4 381,072 - HGI48_RS01725 0.25 +0.8 381,072 - HGI48_RS01725 0.25 -1.5 381,072 - HGI48_RS01725 0.25 -0.5 381,072 - HGI48_RS01725 0.25 +0.0 381,072 - HGI48_RS01725 0.25 -0.5 381,072 - HGI48_RS01725 0.25 -0.2 381,072 - HGI48_RS01725 0.25 -0.2 381,099 + -0.8 381,100 - HGI48_RS01725 0.34 -1.5 381,143 + HGI48_RS01725 0.48 -1.5 381,144 - HGI48_RS01725 0.48 +0.4 381,144 - HGI48_RS01725 0.48 +0.4 381,185 + HGI48_RS01725 0.61 -0.1 381,186 - HGI48_RS01725 0.62 -1.2 381,186 - HGI48_RS01725 0.62 -0.3 381,186 - HGI48_RS01725 0.62 +0.2 381,186 - HGI48_RS01725 0.62 -1.2 381,186 - HGI48_RS01725 0.62 -0.4 381,186 - HGI48_RS01725 0.62 +0.8 381,186 - HGI48_RS01725 0.62 +0.3 381,189 + -0.8 381,190 - HGI48_RS01725 0.63 +2.5 381,190 - +0.2 381,190 - HGI48_RS01725 0.63 -1.0 381,190 - HGI48_RS01725 0.63 -0.4 381,254 + HGI48_RS01725 0.83 +0.2 381,311 + +0.0 381,311 + -0.2 381,311 + -0.2 381,311 + +0.2 381,312 - +0.4 381,312 - +1.8 381,312 - +2.8 381,312 - -1.0 381,355 + +0.3 381,355 + -1.8 381,468 + HGI48_RS01730 0.13 -2.7 381,468 + HGI48_RS01730 0.13 -0.4 381,478 + HGI48_RS01730 0.14 -1.5 381,478 + HGI48_RS01730 0.14 +0.2 381,478 + -0.8 381,479 - HGI48_RS01730 0.14 +0.1 381,479 - HGI48_RS01730 0.14 -0.4 381,479 - HGI48_RS01730 0.14 -0.6 381,479 - HGI48_RS01730 0.14 -0.6 381,479 - HGI48_RS01730 0.14 -0.5 381,537 + HGI48_RS01730 0.20 +0.3 381,537 + HGI48_RS01730 0.20 +0.3 381,538 - HGI48_RS01730 0.20 +0.6 381,538 - HGI48_RS01730 0.20 -0.2 381,538 - HGI48_RS01730 0.20 -0.2 381,631 - HGI48_RS01730 0.29 -0.9 381,703 + -0.2 381,704 - HGI48_RS01730 0.36 +0.0 381,733 - HGI48_RS01730 0.39 -0.2 381,733 - HGI48_RS01730 0.39 -0.4 381,772 + HGI48_RS01730 0.43 +1.3 381,773 - HGI48_RS01730 0.43 +0.4 381,773 - HGI48_RS01730 0.43 +0.7 381,950 + HGI48_RS01730 0.60 +0.1 381,951 - HGI48_RS01730 0.60 +0.3 381,957 - HGI48_RS01730 0.61 -0.8 381,957 - HGI48_RS01730 0.61 -0.9 382,069 + HGI48_RS01730 0.72 +1.1 382,069 + HGI48_RS01730 0.72 -1.5 382,069 + HGI48_RS01730 0.72 -0.2 382,069 + HGI48_RS01730 0.72 +1.0 382,069 + HGI48_RS01730 0.72 +0.1 382,069 + HGI48_RS01730 0.72 -0.2 382,069 + HGI48_RS01730 0.72 -2.0 382,069 + HGI48_RS01730 0.72 -0.8 382,069 + +1.8 382,070 - HGI48_RS01730 0.72 -1.1 382,070 - HGI48_RS01730 0.72 -0.2 382,070 - HGI48_RS01730 0.72 +1.9 382,070 - HGI48_RS01730 0.72 -0.6 382,070 - HGI48_RS01730 0.72 -0.4 382,078 - HGI48_RS01730 0.72 -0.6 382,096 - HGI48_RS01730 0.74 -1.1 382,096 - HGI48_RS01730 0.74 -0.5 382,160 + HGI48_RS01730 0.80 -0.8 382,160 + HGI48_RS01730 0.80 -1.5 382,160 + +1.2 382,160 + HGI48_RS01730 0.80 +0.0 382,194 - HGI48_RS01730 0.84 -0.0 382,194 - HGI48_RS01730 0.84 -1.2 382,194 - +0.8 382,296 + +0.5 382,296 + -1.7 382,297 - +0.0 382,297 - -0.2 382,297 - -0.2 382,297 - +1.8 382,297 - -0.8 382,361 - +1.4 382,361 - +1.4 382,361 - +0.1 382,361 - +0.5 382,361 - -2.2 382,377 - +1.4 382,394 + -1.0 382,394 + +0.1 382,394 + +0.8 382,401 + +0.0 382,401 + +1.8 382,438 + -0.9 382,439 - -0.6 382,439 - -1.0 382,512 + +0.5 382,512 + -1.4 382,603 - -0.4 382,603 - -0.1 382,710 - +0.8 382,809 - HGI48_RS01735 0.24 -1.2 382,809 - +1.8 382,877 + HGI48_RS01735 0.29 -0.0 382,877 + HGI48_RS01735 0.29 +1.1 382,877 + HGI48_RS01735 0.29 +0.2 382,877 + HGI48_RS01735 0.29 +0.3 382,877 + HGI48_RS01735 0.29 -0.5 382,877 + HGI48_RS01735 0.29 -1.8 382,877 + HGI48_RS01735 0.29 -1.2 382,877 + HGI48_RS01735 0.29 -0.2 382,877 + HGI48_RS01735 0.29 +0.0 382,878 - HGI48_RS01735 0.29 -0.4 382,878 - HGI48_RS01735 0.29 +0.0 382,878 - HGI48_RS01735 0.29 -0.2 382,878 - HGI48_RS01735 0.29 -0.4 382,878 - HGI48_RS01735 0.29 -0.2 382,878 - HGI48_RS01735 0.29 +0.8 382,878 - HGI48_RS01735 0.29 -0.9 382,878 - +1.2 382,878 - HGI48_RS01735 0.29 -1.3 382,878 - HGI48_RS01735 0.29 +0.8 382,878 - HGI48_RS01735 0.29 -0.4 382,878 - HGI48_RS01735 0.29 -1.2 382,878 - HGI48_RS01735 0.29 +0.1 382,878 - HGI48_RS01735 0.29 +1.7 382,878 - HGI48_RS01735 0.29 -1.4 383,028 + HGI48_RS01735 0.41 -0.2 383,035 + HGI48_RS01735 0.42 +0.0 383,037 + HGI48_RS01735 0.42 +0.8 383,037 + HGI48_RS01735 0.42 -0.7 383,037 + HGI48_RS01735 0.42 +1.0 383,038 - +2.1 383,038 - HGI48_RS01735 0.42 -1.0 383,038 - HGI48_RS01735 0.42 -1.8 383,038 - HGI48_RS01735 0.42 -0.8 383,038 - HGI48_RS01735 0.42 -1.8 383,061 + HGI48_RS01735 0.44 +0.4 383,061 + HGI48_RS01735 0.44 -0.2 383,062 - HGI48_RS01735 0.44 +0.4 383,062 - HGI48_RS01735 0.44 -0.2 383,221 + HGI48_RS01735 0.56 +0.1 383,221 + HGI48_RS01735 0.56 -0.4 383,222 - HGI48_RS01735 0.56 +2.9 383,259 + HGI48_RS01735 0.59 +0.5 383,260 - +0.8
Or see this region's nucleotide sequence