Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01685 and HGI48_RS01690 are separated by 60 nucleotides HGI48_RS01690 and HGI48_RS01695 are separated by 231 nucleotides
HGI48_RS01685: HGI48_RS01685 - cell division protein FtsP, at 372,101 to 373,519
_RS01685
HGI48_RS01690: HGI48_RS01690 - 2,5-didehydrogluconate reductase DkgA, at 373,580 to 374,425
_RS01690
HGI48_RS01695: HGI48_RS01695 - alcohol dehydrogenase, at 374,657 to 375,820
_RS01695
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.604 kb on + strand at 372.605 kb on - strand, within HGI48_RS01685 at 372.605 kb on - strand, within HGI48_RS01685 at 372.605 kb on - strand, within HGI48_RS01685 at 372.605 kb on - strand at 372.629 kb on + strand, within HGI48_RS01685 at 372.695 kb on + strand, within HGI48_RS01685 at 372.696 kb on - strand, within HGI48_RS01685 at 372.730 kb on + strand, within HGI48_RS01685 at 372.762 kb on - strand, within HGI48_RS01685 at 372.824 kb on + strand, within HGI48_RS01685 at 372.825 kb on - strand, within HGI48_RS01685 at 372.953 kb on - strand, within HGI48_RS01685 at 373.037 kb on - strand, within HGI48_RS01685 at 373.039 kb on + strand, within HGI48_RS01685 at 373.039 kb on + strand at 373.039 kb on + strand, within HGI48_RS01685 at 373.040 kb on - strand at 373.040 kb on - strand at 373.062 kb on + strand at 373.062 kb on + strand, within HGI48_RS01685 at 373.063 kb on - strand, within HGI48_RS01685 at 373.102 kb on + strand, within HGI48_RS01685 at 373.102 kb on + strand at 373.102 kb on + strand, within HGI48_RS01685 at 373.132 kb on + strand, within HGI48_RS01685 at 373.133 kb on - strand, within HGI48_RS01685 at 373.133 kb on - strand, within HGI48_RS01685 at 373.230 kb on + strand, within HGI48_RS01685 at 373.375 kb on - strand at 373.406 kb on + strand at 373.406 kb on + strand at 373.407 kb on - strand at 373.445 kb on + strand at 373.445 kb on + strand at 373.445 kb on + strand at 373.445 kb on + strand at 373.448 kb on + strand at 373.448 kb on + strand at 373.448 kb on + strand at 373.449 kb on - strand at 373.449 kb on - strand at 373.449 kb on - strand at 373.651 kb on + strand at 373.652 kb on - strand at 373.664 kb on + strand at 373.664 kb on + strand at 373.664 kb on + strand at 373.665 kb on - strand, within HGI48_RS01690 at 373.715 kb on - strand, within HGI48_RS01690 at 373.715 kb on - strand at 373.839 kb on - strand, within HGI48_RS01690 at 374.079 kb on + strand at 374.079 kb on + strand, within HGI48_RS01690 at 374.079 kb on + strand, within HGI48_RS01690 at 374.079 kb on + strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.080 kb on - strand, within HGI48_RS01690 at 374.110 kb on + strand, within HGI48_RS01690 at 374.110 kb on + strand, within HGI48_RS01690 at 374.115 kb on + strand at 374.115 kb on + strand at 374.116 kb on - strand, within HGI48_RS01690 at 374.116 kb on - strand, within HGI48_RS01690 at 374.116 kb on - strand at 374.139 kb on - strand, within HGI48_RS01690 at 374.139 kb on - strand, within HGI48_RS01690 at 374.386 kb on + strand at 374.386 kb on + strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.387 kb on - strand at 374.405 kb on - strand at 374.425 kb on + strand at 374.425 kb on + strand at 374.425 kb on + strand at 374.528 kb on + strand at 374.528 kb on + strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.529 kb on - strand at 374.572 kb on + strand at 374.573 kb on - strand at 374.573 kb on - strand at 374.573 kb on - strand at 374.591 kb on + strand at 374.591 kb on + strand at 374.592 kb on - strand at 374.592 kb on - strand at 374.622 kb on + strand at 374.622 kb on + strand at 374.622 kb on + strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.623 kb on - strand at 374.628 kb on + strand at 374.628 kb on + strand at 374.628 kb on + strand at 374.629 kb on - strand at 374.629 kb on - strand at 374.673 kb on + strand at 374.674 kb on - strand at 374.674 kb on - strand at 374.804 kb on + strand, within HGI48_RS01695 at 374.901 kb on + strand, within HGI48_RS01695 at 374.963 kb on - strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.101 kb on + strand, within HGI48_RS01695 at 375.102 kb on - strand, within HGI48_RS01695 at 375.102 kb on - strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand at 375.108 kb on + strand, within HGI48_RS01695 at 375.108 kb on + strand, within HGI48_RS01695 at 375.109 kb on - strand, within HGI48_RS01695 at 375.109 kb on - strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.112 kb on + strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand, within HGI48_RS01695 at 375.113 kb on - strand at 375.149 kb on + strand, within HGI48_RS01695 at 375.149 kb on + strand, within HGI48_RS01695 at 375.150 kb on - strand, within HGI48_RS01695 at 375.213 kb on + strand, within HGI48_RS01695 at 375.214 kb on - strand, within HGI48_RS01695 at 375.214 kb on - strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.279 kb on + strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695 at 375.280 kb on - strand, within HGI48_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 372,604 + +0.8 372,605 - HGI48_RS01685 0.36 +0.3 372,605 - HGI48_RS01685 0.36 +0.5 372,605 - HGI48_RS01685 0.36 -0.8 372,605 - -0.8 372,629 + HGI48_RS01685 0.37 -0.1 372,695 + HGI48_RS01685 0.42 -0.2 372,696 - HGI48_RS01685 0.42 -1.5 372,730 + HGI48_RS01685 0.44 -1.0 372,762 - HGI48_RS01685 0.47 -1.0 372,824 + HGI48_RS01685 0.51 -0.1 372,825 - HGI48_RS01685 0.51 -2.5 372,953 - HGI48_RS01685 0.60 +0.0 373,037 - HGI48_RS01685 0.66 +0.6 373,039 + HGI48_RS01685 0.66 +0.2 373,039 + -0.8 373,039 + HGI48_RS01685 0.66 +0.8 373,040 - -0.8 373,040 - +1.4 373,062 + -0.2 373,062 + HGI48_RS01685 0.68 -0.9 373,063 - HGI48_RS01685 0.68 +1.3 373,102 + HGI48_RS01685 0.71 -0.1 373,102 + -0.2 373,102 + HGI48_RS01685 0.71 -1.2 373,132 + HGI48_RS01685 0.73 -1.5 373,133 - HGI48_RS01685 0.73 -1.2 373,133 - HGI48_RS01685 0.73 +1.0 373,230 + HGI48_RS01685 0.80 -1.0 373,375 - -0.8 373,406 + -0.7 373,406 + +0.1 373,407 - -0.4 373,445 + -0.2 373,445 + -1.8 373,445 + +1.4 373,445 + -0.2 373,448 + -1.5 373,448 + -1.5 373,448 + -1.4 373,449 - -0.8 373,449 - -0.8 373,449 - +0.6 373,651 + -1.0 373,652 - -1.2 373,664 + -0.5 373,664 + -0.2 373,664 + -0.8 373,665 - HGI48_RS01690 0.10 -0.2 373,715 - HGI48_RS01690 0.16 -0.3 373,715 - +0.8 373,839 - HGI48_RS01690 0.31 -2.2 374,079 + +1.5 374,079 + HGI48_RS01690 0.59 -0.7 374,079 + HGI48_RS01690 0.59 -0.1 374,079 + HGI48_RS01690 0.59 -0.3 374,080 - HGI48_RS01690 0.59 +0.2 374,080 - HGI48_RS01690 0.59 -2.0 374,080 - HGI48_RS01690 0.59 -1.3 374,080 - HGI48_RS01690 0.59 -2.6 374,080 - HGI48_RS01690 0.59 +0.4 374,080 - HGI48_RS01690 0.59 -2.0 374,080 - HGI48_RS01690 0.59 +0.6 374,080 - HGI48_RS01690 0.59 -1.1 374,080 - HGI48_RS01690 0.59 -2.9 374,080 - HGI48_RS01690 0.59 -1.2 374,080 - HGI48_RS01690 0.59 +0.3 374,080 - HGI48_RS01690 0.59 -1.5 374,110 + HGI48_RS01690 0.63 +0.5 374,110 + HGI48_RS01690 0.63 -1.2 374,115 + -0.8 374,115 + +0.2 374,116 - HGI48_RS01690 0.63 -1.5 374,116 - HGI48_RS01690 0.63 -1.4 374,116 - +1.8 374,139 - HGI48_RS01690 0.66 -1.4 374,139 - HGI48_RS01690 0.66 -0.7 374,386 + -0.5 374,386 + +0.8 374,387 - -0.8 374,387 - +0.2 374,387 - +1.6 374,387 - +0.4 374,405 - +0.8 374,425 + -0.2 374,425 + +1.1 374,425 + +1.0 374,528 + +0.2 374,528 + +1.1 374,529 - -0.4 374,529 - -1.4 374,529 - -0.2 374,529 - -1.1 374,572 + -0.8 374,573 - +0.2 374,573 - -2.2 374,573 - +2.6 374,591 + +0.0 374,591 + -0.2 374,592 - -0.1 374,592 - +0.8 374,622 + +0.4 374,622 + -0.0 374,622 + -0.8 374,623 - +0.1 374,623 - +0.2 374,623 - -0.8 374,623 - +1.8 374,623 - -1.8 374,623 - +0.3 374,628 + +0.8 374,628 + -0.5 374,628 + +0.4 374,629 - -1.4 374,629 - +0.4 374,673 + -0.2 374,674 - -0.7 374,674 - -0.4 374,804 + HGI48_RS01695 0.13 +1.1 374,901 + HGI48_RS01695 0.21 -0.8 374,963 - HGI48_RS01695 0.26 -0.6 375,101 + HGI48_RS01695 0.38 +1.3 375,101 + HGI48_RS01695 0.38 +0.2 375,101 + HGI48_RS01695 0.38 -0.6 375,102 - HGI48_RS01695 0.38 -0.2 375,102 - HGI48_RS01695 0.38 -2.0 375,108 + HGI48_RS01695 0.39 +0.4 375,108 + HGI48_RS01695 0.39 -1.8 375,108 + HGI48_RS01695 0.39 -1.8 375,108 + +0.8 375,108 + HGI48_RS01695 0.39 -0.2 375,108 + HGI48_RS01695 0.39 +0.0 375,109 - HGI48_RS01695 0.39 -2.5 375,109 - HGI48_RS01695 0.39 +1.1 375,112 + HGI48_RS01695 0.39 -1.2 375,112 + +0.2 375,112 + HGI48_RS01695 0.39 +0.2 375,112 + HGI48_RS01695 0.39 -2.2 375,112 + HGI48_RS01695 0.39 +0.8 375,112 + HGI48_RS01695 0.39 -1.1 375,112 + HGI48_RS01695 0.39 -1.5 375,112 + HGI48_RS01695 0.39 -0.1 375,112 + HGI48_RS01695 0.39 -0.5 375,113 - HGI48_RS01695 0.39 -0.4 375,113 - HGI48_RS01695 0.39 -0.2 375,113 - HGI48_RS01695 0.39 -1.1 375,113 - HGI48_RS01695 0.39 -0.6 375,113 - HGI48_RS01695 0.39 -0.5 375,113 - HGI48_RS01695 0.39 -1.2 375,113 - HGI48_RS01695 0.39 -1.5 375,113 - -0.2 375,149 + HGI48_RS01695 0.42 -0.5 375,149 + HGI48_RS01695 0.42 -1.5 375,150 - HGI48_RS01695 0.42 +0.6 375,213 + HGI48_RS01695 0.48 -0.5 375,214 - HGI48_RS01695 0.48 +0.6 375,214 - HGI48_RS01695 0.48 -0.8 375,279 + HGI48_RS01695 0.53 +1.0 375,279 + HGI48_RS01695 0.53 -1.5 375,279 + HGI48_RS01695 0.53 -0.7 375,279 + HGI48_RS01695 0.53 -0.0 375,279 + HGI48_RS01695 0.53 -1.2 375,280 - HGI48_RS01695 0.54 +0.6 375,280 - HGI48_RS01695 0.54 +0.8 375,280 - HGI48_RS01695 0.54 +0.6 375,280 - HGI48_RS01695 0.54 +0.4 375,280 - HGI48_RS01695 0.54 +0.5 375,280 - HGI48_RS01695 0.54 -0.6
Or see this region's nucleotide sequence