Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01465

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01455 and HGI48_RS01460 overlap by 23 nucleotidesHGI48_RS01460 and HGI48_RS01465 overlap by 4 nucleotidesHGI48_RS01465 and HGI48_RS01470 are separated by 47 nucleotides HGI48_RS01455: HGI48_RS01455 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 322,899 to 323,477 _RS01455 HGI48_RS01460: HGI48_RS01460 - LPS export ABC transporter periplasmic protein LptC, at 323,455 to 324,024 _RS01460 HGI48_RS01465: HGI48_RS01465 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 324,021 to 324,587 _RS01465 HGI48_RS01470: HGI48_RS01470 - arabinose-5-phosphate isomerase KdsD, at 324,635 to 325,621 _RS01470 Position (kb) 324 325Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 323.489 kb on - strandat 323.615 kb on - strand, within HGI48_RS01460at 324.054 kb on - strandat 324.054 kb on - strandat 324.054 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.125 kb on - strand, within HGI48_RS01465at 324.125 kb on - strand, within HGI48_RS01465at 324.125 kb on - strandat 324.125 kb on - strand, within HGI48_RS01465at 324.125 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.301 kb on + strand, within HGI48_RS01465at 324.302 kb on - strand, within HGI48_RS01465at 324.302 kb on - strand, within HGI48_RS01465at 324.302 kb on - strand, within HGI48_RS01465at 324.303 kb on + strandat 324.303 kb on + strand, within HGI48_RS01465at 324.303 kb on + strand, within HGI48_RS01465at 324.303 kb on + strand, within HGI48_RS01465at 324.303 kb on + strand, within HGI48_RS01465at 324.303 kb on + strandat 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strandat 324.405 kb on - strand, within HGI48_RS01465at 324.421 kb on - strand, within HGI48_RS01465at 324.460 kb on + strand, within HGI48_RS01465at 324.460 kb on + strand, within HGI48_RS01465at 324.461 kb on - strand, within HGI48_RS01465at 324.461 kb on - strand, within HGI48_RS01465at 324.461 kb on - strand, within HGI48_RS01465at 324.481 kb on - strand, within HGI48_RS01465at 324.481 kb on - strand, within HGI48_RS01465at 324.481 kb on - strand, within HGI48_RS01465at 324.481 kb on - strandat 324.502 kb on - strand, within HGI48_RS01465at 324.595 kb on + strandat 324.595 kb on + strandat 324.595 kb on + strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.636 kb on + strandat 324.636 kb on + strandat 324.637 kb on - strandat 324.637 kb on - strandat 324.637 kb on - strandat 324.637 kb on - strandat 324.637 kb on - strandat 324.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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323,489 - -0.2
323,615 - HGI48_RS01460 0.28 +0.8
324,054 - -2.0
324,054 - -0.4
324,054 - -0.8
324,072 - -0.5
324,072 - -0.4
324,072 - +0.8
324,072 - +0.8
324,072 - -0.5
324,072 - -1.8
324,072 - -1.8
324,125 - HGI48_RS01465 0.18 -0.8
324,125 - HGI48_RS01465 0.18 +0.5
324,125 - -0.8
324,125 - HGI48_RS01465 0.18 +0.6
324,125 - HGI48_RS01465 0.18 -1.2
324,224 - HGI48_RS01465 0.36 +1.0
324,224 - HGI48_RS01465 0.36 -1.2
324,224 - HGI48_RS01465 0.36 -1.8
324,224 - HGI48_RS01465 0.36 -0.8
324,224 - HGI48_RS01465 0.36 -0.8
324,224 - HGI48_RS01465 0.36 +0.7
324,224 - HGI48_RS01465 0.36 -1.3
324,255 - HGI48_RS01465 0.41 -0.8
324,255 - HGI48_RS01465 0.41 -1.6
324,255 - HGI48_RS01465 0.41 +2.0
324,255 - HGI48_RS01465 0.41 -1.2
324,255 - HGI48_RS01465 0.41 -0.5
324,301 + HGI48_RS01465 0.49 -2.4
324,302 - HGI48_RS01465 0.50 -2.8
324,302 - HGI48_RS01465 0.50 -0.3
324,302 - HGI48_RS01465 0.50 -1.4
324,303 + +0.8
324,303 + HGI48_RS01465 0.50 -1.5
324,303 + HGI48_RS01465 0.50 -1.5
324,303 + HGI48_RS01465 0.50 -1.8
324,303 + HGI48_RS01465 0.50 -2.0
324,303 + -0.8
324,304 - HGI48_RS01465 0.50 +0.5
324,304 - HGI48_RS01465 0.50 -2.6
324,304 - HGI48_RS01465 0.50 -2.5
324,304 - HGI48_RS01465 0.50 -0.8
324,304 - HGI48_RS01465 0.50 -1.4
324,304 - HGI48_RS01465 0.50 -2.4
324,304 - HGI48_RS01465 0.50 +0.4
324,304 - HGI48_RS01465 0.50 -0.5
324,304 - HGI48_RS01465 0.50 -0.0
324,304 - HGI48_RS01465 0.50 -0.2
324,304 - HGI48_RS01465 0.50 -0.3
324,304 - HGI48_RS01465 0.50 +0.1
324,304 - HGI48_RS01465 0.50 -0.4
324,304 - HGI48_RS01465 0.50 -1.2
324,304 - HGI48_RS01465 0.50 -2.2
324,304 - HGI48_RS01465 0.50 -0.5
324,304 - HGI48_RS01465 0.50 -0.7
324,304 - HGI48_RS01465 0.50 -0.5
324,304 - HGI48_RS01465 0.50 -0.5
324,304 - HGI48_RS01465 0.50 -0.4
324,304 - HGI48_RS01465 0.50 -1.5
324,304 - HGI48_RS01465 0.50 -1.4
324,304 - HGI48_RS01465 0.50 +0.8
324,304 - HGI48_RS01465 0.50 -1.0
324,304 - +0.8
324,405 - HGI48_RS01465 0.68 -2.2
324,421 - HGI48_RS01465 0.71 +1.5
324,460 + HGI48_RS01465 0.77 -1.0
324,460 + HGI48_RS01465 0.77 -0.9
324,461 - HGI48_RS01465 0.78 -2.6
324,461 - HGI48_RS01465 0.78 -2.4
324,461 - HGI48_RS01465 0.78 -1.4
324,481 - HGI48_RS01465 0.81 -0.7
324,481 - HGI48_RS01465 0.81 +0.2
324,481 - HGI48_RS01465 0.81 -0.7
324,481 - -0.2
324,502 - HGI48_RS01465 0.85 -1.6
324,595 + -1.8
324,595 + +0.4
324,595 + -0.6
324,596 - -0.8
324,596 - +0.4
324,596 - -0.4
324,596 - +2.1
324,596 - +0.1
324,596 - +0.1
324,596 - -0.2
324,596 - +0.3
324,636 + -0.6
324,636 + -0.2
324,637 - -2.9
324,637 - -1.2
324,637 - -0.0
324,637 - -0.7
324,637 - -0.6
324,637 - +0.5

Or see this region's nucleotide sequence