Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01435 and HGI48_RS01440 are separated by 92 nucleotides HGI48_RS01440 and HGI48_RS01445 are separated by 24 nucleotides HGI48_RS01445 and HGI48_RS01450 are separated by 49 nucleotides HGI48_RS01450 and HGI48_RS01455 are separated by 15 nucleotides
HGI48_RS01435: HGI48_RS01435 - PTS IIA-like nitrogen regulatory protein PtsN, at 319,782 to 320,270
_RS01435
HGI48_RS01440: HGI48_RS01440 - ribosome hibernation promoting factor, at 320,363 to 320,650
_RS01440
HGI48_RS01445: HGI48_RS01445 - RNA polymerase factor sigma-54, at 320,675 to 322,108
_RS01445
HGI48_RS01450: HGI48_RS01450 - LPS export ABC transporter ATP-binding protein, at 322,158 to 322,883
_RS01450
HGI48_RS01455: HGI48_RS01455 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 322,899 to 323,477
_RS01455
Position (kb) 320
321
322
323 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.684 kb on + strand at 319.685 kb on - strand at 319.685 kb on - strand at 319.741 kb on + strand at 319.742 kb on - strand at 319.742 kb on - strand at 319.904 kb on + strand at 319.904 kb on + strand, within HGI48_RS01435 at 319.904 kb on + strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.905 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.909 kb on - strand, within HGI48_RS01435 at 319.919 kb on + strand, within HGI48_RS01435 at 319.920 kb on - strand at 319.953 kb on + strand, within HGI48_RS01435 at 320.034 kb on - strand, within HGI48_RS01435 at 320.220 kb on - strand, within HGI48_RS01435 at 320.244 kb on - strand at 320.273 kb on + strand at 320.274 kb on - strand at 320.274 kb on - strand at 320.274 kb on - strand at 320.274 kb on - strand at 320.321 kb on + strand at 320.322 kb on - strand at 320.322 kb on - strand at 320.386 kb on + strand at 320.387 kb on - strand at 320.439 kb on + strand, within HGI48_RS01440 at 320.439 kb on + strand, within HGI48_RS01440 at 320.439 kb on + strand at 320.440 kb on - strand, within HGI48_RS01440 at 320.440 kb on - strand, within HGI48_RS01440 at 320.443 kb on + strand, within HGI48_RS01440 at 320.539 kb on - strand, within HGI48_RS01440 at 320.551 kb on + strand, within HGI48_RS01440 at 320.689 kb on + strand at 320.711 kb on - strand at 320.907 kb on + strand, within HGI48_RS01445 at 321.017 kb on - strand at 321.202 kb on - strand, within HGI48_RS01445 at 321.272 kb on - strand, within HGI48_RS01445 at 321.297 kb on + strand, within HGI48_RS01445 at 321.298 kb on - strand, within HGI48_RS01445 at 321.298 kb on - strand, within HGI48_RS01445 at 321.484 kb on + strand, within HGI48_RS01445 at 321.485 kb on - strand at 321.741 kb on + strand at 321.742 kb on - strand, within HGI48_RS01445 at 321.775 kb on - strand, within HGI48_RS01445 at 322.066 kb on + strand at 322.067 kb on - strand at 322.109 kb on - strand at 322.119 kb on - strand at 322.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 319,684 + -1.2 319,685 - -1.8 319,685 - +1.1 319,741 + -2.0 319,742 - +0.2 319,742 - +1.0 319,904 + +0.8 319,904 + HGI48_RS01435 0.25 +0.3 319,904 + HGI48_RS01435 0.25 -2.0 319,905 - HGI48_RS01435 0.25 +2.3 319,905 - HGI48_RS01435 0.25 -0.4 319,905 - HGI48_RS01435 0.25 -1.2 319,905 - HGI48_RS01435 0.25 +0.2 319,905 - HGI48_RS01435 0.25 -0.9 319,905 - HGI48_RS01435 0.25 -0.4 319,909 - HGI48_RS01435 0.26 -0.9 319,909 - HGI48_RS01435 0.26 -1.5 319,909 - HGI48_RS01435 0.26 +0.1 319,909 - HGI48_RS01435 0.26 -2.6 319,909 - HGI48_RS01435 0.26 -0.8 319,919 + HGI48_RS01435 0.28 -2.0 319,920 - +0.8 319,953 + HGI48_RS01435 0.35 +0.1 320,034 - HGI48_RS01435 0.52 -1.2 320,220 - HGI48_RS01435 0.90 -1.8 320,244 - +0.8 320,273 + -1.2 320,274 - +1.4 320,274 - -0.3 320,274 - +1.0 320,274 - -1.5 320,321 + +0.4 320,322 - -0.8 320,322 - -0.9 320,386 + -0.8 320,387 - -0.5 320,439 + HGI48_RS01440 0.26 -0.2 320,439 + HGI48_RS01440 0.26 +0.3 320,439 + +1.4 320,440 - HGI48_RS01440 0.27 -1.4 320,440 - HGI48_RS01440 0.27 -1.0 320,443 + HGI48_RS01440 0.28 -0.2 320,539 - HGI48_RS01440 0.61 +0.5 320,551 + HGI48_RS01440 0.65 -0.0 320,689 + -1.8 320,711 - -0.8 320,907 + HGI48_RS01445 0.16 -0.2 321,017 - -0.2 321,202 - HGI48_RS01445 0.37 +1.4 321,272 - HGI48_RS01445 0.42 -0.5 321,297 + HGI48_RS01445 0.43 -0.8 321,298 - HGI48_RS01445 0.43 -0.8 321,298 - HGI48_RS01445 0.43 -2.0 321,484 + HGI48_RS01445 0.56 -1.7 321,485 - -0.2 321,741 + +1.2 321,742 - HGI48_RS01445 0.74 -0.5 321,775 - HGI48_RS01445 0.77 -1.2 322,066 + +0.5 322,067 - -1.7 322,109 - -0.8 322,119 - -1.0 322,144 - -0.0
Or see this region's nucleotide sequence