Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01185 and HGI48_RS01190 overlap by 1 nucleotides HGI48_RS01190 and HGI48_RS01195 are separated by 91 nucleotides HGI48_RS01195 and HGI48_RS01200 are separated by 311 nucleotides
HGI48_RS01185: HGI48_RS01185 - uroporphyrinogen decarboxylase, at 265,369 to 266,442
_RS01185
HGI48_RS01190: HGI48_RS01190 - deoxyribonuclease V, at 266,442 to 267,116
_RS01190
HGI48_RS01195: HGI48_RS01195 - YjaG family protein, at 267,208 to 267,798
_RS01195
HGI48_RS01200: HGI48_RS01200 - DNA-binding protein HU-alpha, at 268,110 to 268,382
_RS01200
Position (kb) 266
267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 266.422 kb on + strand at 266.448 kb on - strand at 266.507 kb on + strand at 266.507 kb on + strand at 266.507 kb on + strand at 266.507 kb on + strand at 266.508 kb on - strand at 266.508 kb on - strand at 266.625 kb on + strand, within HGI48_RS01190 at 266.626 kb on - strand at 266.640 kb on - strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.658 kb on + strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.659 kb on - strand, within HGI48_RS01190 at 266.660 kb on + strand, within HGI48_RS01190 at 266.660 kb on + strand, within HGI48_RS01190 at 266.660 kb on + strand, within HGI48_RS01190 at 266.660 kb on + strand, within HGI48_RS01190 at 266.661 kb on - strand, within HGI48_RS01190 at 266.661 kb on - strand, within HGI48_RS01190 at 266.661 kb on - strand, within HGI48_RS01190 at 266.661 kb on - strand, within HGI48_RS01190 at 267.114 kb on + strand at 267.114 kb on + strand at 267.115 kb on - strand at 267.115 kb on - strand at 267.115 kb on - strand at 267.115 kb on - strand at 267.140 kb on - strand at 267.151 kb on + strand at 267.151 kb on + strand at 267.151 kb on + strand at 267.153 kb on + strand at 267.176 kb on + strand at 267.188 kb on + strand at 267.188 kb on + strand at 267.188 kb on + strand at 267.191 kb on + strand at 267.191 kb on + strand at 267.191 kb on + strand at 267.192 kb on - strand at 267.192 kb on - strand at 267.202 kb on + strand at 267.203 kb on - strand at 267.213 kb on - strand at 267.291 kb on + strand, within HGI48_RS01195 at 267.291 kb on + strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.292 kb on - strand, within HGI48_RS01195 at 267.295 kb on + strand, within HGI48_RS01195 at 267.304 kb on + strand, within HGI48_RS01195 at 267.304 kb on + strand, within HGI48_RS01195 at 267.305 kb on - strand, within HGI48_RS01195 at 267.305 kb on - strand, within HGI48_RS01195 at 267.308 kb on - strand at 267.358 kb on - strand, within HGI48_RS01195 at 267.476 kb on + strand, within HGI48_RS01195 at 267.476 kb on + strand, within HGI48_RS01195 at 267.732 kb on - strand at 267.790 kb on + strand at 267.804 kb on + strand at 267.816 kb on + strand at 267.816 kb on + strand at 267.817 kb on - strand at 267.817 kb on - strand at 267.839 kb on + strand at 267.868 kb on + strand at 267.923 kb on + strand at 267.923 kb on + strand at 267.938 kb on - strand at 267.984 kb on + strand at 267.984 kb on + strand at 267.992 kb on + strand at 267.992 kb on + strand at 267.992 kb on + strand at 268.040 kb on + strand at 268.040 kb on + strand at 268.040 kb on + strand at 268.040 kb on + strand at 268.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 266,422 + +0.0 266,448 - -2.2 266,507 + +1.6 266,507 + -0.8 266,507 + -1.2 266,507 + -0.7 266,508 - -0.2 266,508 - +0.2 266,625 + HGI48_RS01190 0.27 -1.5 266,626 - +0.8 266,640 - HGI48_RS01190 0.29 -0.4 266,658 + HGI48_RS01190 0.32 -0.5 266,658 + HGI48_RS01190 0.32 -1.8 266,658 + HGI48_RS01190 0.32 +0.7 266,658 + HGI48_RS01190 0.32 +0.9 266,658 + HGI48_RS01190 0.32 -0.7 266,658 + HGI48_RS01190 0.32 +0.5 266,658 + HGI48_RS01190 0.32 -0.2 266,658 + HGI48_RS01190 0.32 +0.1 266,658 + HGI48_RS01190 0.32 -0.8 266,658 + HGI48_RS01190 0.32 -2.5 266,658 + HGI48_RS01190 0.32 +0.2 266,658 + HGI48_RS01190 0.32 -1.2 266,658 + HGI48_RS01190 0.32 +0.7 266,658 + HGI48_RS01190 0.32 +0.1 266,658 + HGI48_RS01190 0.32 -1.2 266,658 + +0.8 266,658 + HGI48_RS01190 0.32 +0.7 266,658 + HGI48_RS01190 0.32 +0.5 266,658 + HGI48_RS01190 0.32 -1.4 266,658 + HGI48_RS01190 0.32 -0.1 266,658 + HGI48_RS01190 0.32 +0.1 266,659 - HGI48_RS01190 0.32 -0.2 266,659 - HGI48_RS01190 0.32 +0.0 266,659 - HGI48_RS01190 0.32 -2.0 266,659 - HGI48_RS01190 0.32 -2.2 266,659 - HGI48_RS01190 0.32 -2.2 266,659 - +2.6 266,659 - HGI48_RS01190 0.32 +0.7 266,659 - HGI48_RS01190 0.32 -0.2 266,659 - +0.8 266,659 - HGI48_RS01190 0.32 -0.6 266,659 - HGI48_RS01190 0.32 -1.2 266,659 - HGI48_RS01190 0.32 -0.6 266,659 - HGI48_RS01190 0.32 +1.0 266,659 - HGI48_RS01190 0.32 -0.6 266,659 - HGI48_RS01190 0.32 -2.2 266,660 + HGI48_RS01190 0.32 -0.8 266,660 + HGI48_RS01190 0.32 -0.9 266,660 + HGI48_RS01190 0.32 +0.3 266,660 + HGI48_RS01190 0.32 -0.2 266,661 - HGI48_RS01190 0.32 -0.6 266,661 - HGI48_RS01190 0.32 -0.5 266,661 - HGI48_RS01190 0.32 +2.2 266,661 - HGI48_RS01190 0.32 +0.1 267,114 + -0.3 267,114 + +0.8 267,115 - -0.4 267,115 - -0.4 267,115 - -0.5 267,115 - +0.1 267,140 - -1.2 267,151 + -0.1 267,151 + -1.4 267,151 + -0.2 267,153 + +0.1 267,176 + -1.2 267,188 + +0.8 267,188 + -0.3 267,188 + -0.0 267,191 + -0.8 267,191 + -0.2 267,191 + +2.0 267,192 - +1.1 267,192 - -1.2 267,202 + -0.3 267,203 - +0.1 267,213 - -0.2 267,291 + HGI48_RS01195 0.14 -0.3 267,291 + HGI48_RS01195 0.14 +1.1 267,292 - HGI48_RS01195 0.14 -1.5 267,292 - HGI48_RS01195 0.14 -0.6 267,292 - HGI48_RS01195 0.14 -2.8 267,292 - HGI48_RS01195 0.14 +2.0 267,292 - HGI48_RS01195 0.14 -1.3 267,292 - HGI48_RS01195 0.14 -1.8 267,292 - HGI48_RS01195 0.14 +0.6 267,292 - HGI48_RS01195 0.14 +1.0 267,292 - HGI48_RS01195 0.14 -1.2 267,292 - HGI48_RS01195 0.14 -1.2 267,295 + HGI48_RS01195 0.15 -0.8 267,304 + HGI48_RS01195 0.16 -0.1 267,304 + HGI48_RS01195 0.16 -0.2 267,305 - HGI48_RS01195 0.16 -0.2 267,305 - HGI48_RS01195 0.16 -0.8 267,308 - +0.8 267,358 - HGI48_RS01195 0.25 -1.1 267,476 + HGI48_RS01195 0.45 +0.6 267,476 + HGI48_RS01195 0.45 -0.6 267,732 - +1.8 267,790 + -0.2 267,804 + -0.4 267,816 + -0.4 267,816 + -1.2 267,817 - +1.8 267,817 - -1.2 267,839 + -1.2 267,868 + +0.8 267,923 + +1.6 267,923 + +0.8 267,938 - +0.8 267,984 + -0.3 267,984 + +0.8 267,992 + -0.2 267,992 + +1.8 267,992 + +0.8 268,040 + +1.0 268,040 + -0.8 268,040 + +1.8 268,040 + -1.2 268,041 - -1.5
Or see this region's nucleotide sequence