Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01135

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01125 and HGI48_RS01130 are separated by 12 nucleotidesHGI48_RS01130 and HGI48_RS01135 are separated by 156 nucleotidesHGI48_RS01135 and HGI48_RS01140 overlap by 4 nucleotides HGI48_RS01125: HGI48_RS01125 - cytochrome b/b6 domain-containing protein, at 254,636 to 255,238 _RS01125 HGI48_RS01130: HGI48_RS01130 - hypothetical protein, at 255,251 to 255,874 _RS01130 HGI48_RS01135: HGI48_RS01135 - heavy metal response regulator transcription factor, at 256,031 to 256,702 _RS01135 HGI48_RS01140: HGI48_RS01140 - heavy metal sensor histidine kinase, at 256,699 to 258,132 _RS01140 Position (kb) 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 255.135 kb on + strand, within HGI48_RS01125at 255.135 kb on + strand, within HGI48_RS01125at 255.135 kb on + strand, within HGI48_RS01125at 255.160 kb on + strand, within HGI48_RS01125at 255.160 kb on + strand, within HGI48_RS01125at 255.160 kb on + strand, within HGI48_RS01125at 255.160 kb on + strand, within HGI48_RS01125at 255.160 kb on + strand, within HGI48_RS01125at 255.160 kb on + strand, within HGI48_RS01125at 255.160 kb on + strand, within HGI48_RS01125at 255.160 kb on + strand, within HGI48_RS01125at 255.160 kb on + strand, within HGI48_RS01125at 255.161 kb on - strand, within HGI48_RS01125at 255.161 kb on - strand, within HGI48_RS01125at 255.161 kb on - strand, within HGI48_RS01125at 255.161 kb on - strand, within HGI48_RS01125at 255.238 kb on + strandat 255.239 kb on - strandat 255.252 kb on + strandat 255.253 kb on - strandat 255.435 kb on + strand, within HGI48_RS01130at 255.435 kb on + strand, within HGI48_RS01130at 255.435 kb on + strand, within HGI48_RS01130at 255.435 kb on + strand, within HGI48_RS01130at 255.435 kb on + strand, within HGI48_RS01130at 255.435 kb on + strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.436 kb on - strand, within HGI48_RS01130at 255.628 kb on + strandat 255.634 kb on + strandat 255.634 kb on + strand, within HGI48_RS01130at 255.833 kb on + strandat 255.833 kb on + strandat 255.951 kb on + strandat 255.951 kb on + strandat 255.951 kb on + strandat 255.951 kb on + strandat 255.951 kb on + strandat 255.952 kb on - strandat 255.952 kb on - strandat 255.952 kb on - strandat 255.952 kb on - strandat 255.952 kb on - strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.982 kb on + strandat 255.983 kb on - strandat 255.983 kb on - strandat 255.983 kb on - strandat 255.983 kb on - strandat 255.983 kb on - strandat 255.983 kb on - strandat 256.036 kb on + strandat 256.163 kb on + strand, within HGI48_RS01135at 256.164 kb on - strand, within HGI48_RS01135at 256.231 kb on + strand, within HGI48_RS01135at 256.279 kb on - strandat 256.288 kb on + strand, within HGI48_RS01135at 256.289 kb on - strand, within HGI48_RS01135at 256.319 kb on + strand, within HGI48_RS01135at 256.361 kb on - strand, within HGI48_RS01135at 256.389 kb on + strand, within HGI48_RS01135at 256.390 kb on - strand, within HGI48_RS01135at 256.390 kb on - strand, within HGI48_RS01135at 256.390 kb on - strand, within HGI48_RS01135at 256.422 kb on + strand, within HGI48_RS01135at 256.422 kb on + strandat 256.434 kb on + strand, within HGI48_RS01135at 256.434 kb on + strand, within HGI48_RS01135at 256.434 kb on + strand, within HGI48_RS01135at 256.434 kb on + strand, within HGI48_RS01135at 256.435 kb on - strand, within HGI48_RS01135at 256.435 kb on - strandat 256.492 kb on + strand, within HGI48_RS01135at 256.492 kb on + strandat 256.492 kb on + strand, within HGI48_RS01135at 256.492 kb on + strand, within HGI48_RS01135at 256.492 kb on + strand, within HGI48_RS01135at 256.493 kb on - strand, within HGI48_RS01135at 256.493 kb on - strand, within HGI48_RS01135at 256.629 kb on + strand, within HGI48_RS01135at 256.630 kb on - strand, within HGI48_RS01135at 256.630 kb on - strand, within HGI48_RS01135at 256.630 kb on - strandat 256.679 kb on + strandat 256.680 kb on - strandat 256.680 kb on - strandat 256.801 kb on + strandat 256.802 kb on - strandat 256.802 kb on - strandat 256.807 kb on + strandat 256.807 kb on + strandat 256.807 kb on + strandat 256.807 kb on + strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.808 kb on - strandat 256.854 kb on - strand, within HGI48_RS01140at 256.870 kb on + strand, within HGI48_RS01140at 256.873 kb on + strand, within HGI48_RS01140at 256.883 kb on + strand, within HGI48_RS01140at 256.884 kb on - strand, within HGI48_RS01140at 256.900 kb on - strand, within HGI48_RS01140at 256.999 kb on - strand, within HGI48_RS01140at 257.019 kb on + strand, within HGI48_RS01140at 257.019 kb on + strand, within HGI48_RS01140at 257.019 kb on + strand, within HGI48_RS01140at 257.020 kb on - strand, within HGI48_RS01140at 257.020 kb on - strand, within HGI48_RS01140at 257.209 kb on + strand, within HGI48_RS01140at 257.209 kb on + strandat 257.209 kb on + strand, within HGI48_RS01140at 257.209 kb on + strand, within HGI48_RS01140at 257.210 kb on - strand, within HGI48_RS01140at 257.210 kb on - strand, within HGI48_RS01140at 257.210 kb on - strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.301 kb on - strand, within HGI48_RS01140at 257.307 kb on + strand, within HGI48_RS01140at 257.307 kb on + strand, within HGI48_RS01140at 257.307 kb on + strand, within HGI48_RS01140at 257.407 kb on - strand, within HGI48_RS01140at 257.437 kb on + strand, within HGI48_RS01140at 257.527 kb on + strand, within HGI48_RS01140at 257.527 kb on + strand, within HGI48_RS01140at 257.551 kb on + strand, within HGI48_RS01140at 257.551 kb on + strand, within HGI48_RS01140at 257.552 kb on - strand, within HGI48_RS01140at 257.552 kb on - strand, within HGI48_RS01140at 257.562 kb on - strand, within HGI48_RS01140at 257.574 kb on + strand, within HGI48_RS01140at 257.575 kb on - strand, within HGI48_RS01140at 257.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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255,135 + HGI48_RS01125 0.83 -0.4
255,135 + HGI48_RS01125 0.83 -0.6
255,135 + HGI48_RS01125 0.83 -0.2
255,160 + HGI48_RS01125 0.87 -0.0
255,160 + HGI48_RS01125 0.87 -1.0
255,160 + HGI48_RS01125 0.87 -1.5
255,160 + HGI48_RS01125 0.87 +0.4
255,160 + HGI48_RS01125 0.87 +0.2
255,160 + HGI48_RS01125 0.87 -0.4
255,160 + HGI48_RS01125 0.87 +1.2
255,160 + HGI48_RS01125 0.87 -1.2
255,160 + HGI48_RS01125 0.87 -2.2
255,161 - HGI48_RS01125 0.87 -0.8
255,161 - HGI48_RS01125 0.87 +0.8
255,161 - HGI48_RS01125 0.87 +0.1
255,161 - HGI48_RS01125 0.87 -0.4
255,238 + -0.2
255,239 - +0.0
255,252 + -0.8
255,253 - -0.8
255,435 + HGI48_RS01130 0.29 +1.1
255,435 + HGI48_RS01130 0.29 -1.5
255,435 + HGI48_RS01130 0.29 -1.5
255,435 + HGI48_RS01130 0.29 +1.6
255,435 + HGI48_RS01130 0.29 +0.8
255,435 + HGI48_RS01130 0.29 +0.6
255,436 - HGI48_RS01130 0.30 +0.6
255,436 - HGI48_RS01130 0.30 +0.1
255,436 - HGI48_RS01130 0.30 +0.6
255,436 - HGI48_RS01130 0.30 -1.0
255,436 - HGI48_RS01130 0.30 +0.3
255,436 - HGI48_RS01130 0.30 -0.9
255,436 - HGI48_RS01130 0.30 +0.5
255,436 - HGI48_RS01130 0.30 -0.8
255,436 - HGI48_RS01130 0.30 +0.5
255,436 - HGI48_RS01130 0.30 -2.3
255,628 + +0.8
255,634 + +0.2
255,634 + HGI48_RS01130 0.61 +0.3
255,833 + +0.3
255,833 + -0.0
255,951 + -1.8
255,951 + -0.2
255,951 + -0.8
255,951 + +0.1
255,951 + +0.1
255,952 - +0.5
255,952 - -0.9
255,952 - -2.8
255,952 - +0.6
255,952 - +0.8
255,982 + +0.6
255,982 + +0.1
255,982 + -1.6
255,982 + -1.2
255,982 + -1.2
255,982 + -0.0
255,983 - -1.1
255,983 - +0.5
255,983 - +1.1
255,983 - +0.6
255,983 - +1.9
255,983 - +1.5
256,036 + -0.0
256,163 + HGI48_RS01135 0.20 +1.4
256,164 - HGI48_RS01135 0.20 -1.8
256,231 + HGI48_RS01135 0.30 -0.6
256,279 - -0.2
256,288 + HGI48_RS01135 0.38 +0.1
256,289 - HGI48_RS01135 0.38 -0.5
256,319 + HGI48_RS01135 0.43 -0.5
256,361 - HGI48_RS01135 0.49 +0.4
256,389 + HGI48_RS01135 0.53 +0.7
256,390 - HGI48_RS01135 0.53 +0.8
256,390 - HGI48_RS01135 0.53 +0.3
256,390 - HGI48_RS01135 0.53 -0.5
256,422 + HGI48_RS01135 0.58 -0.5
256,422 + +0.2
256,434 + HGI48_RS01135 0.60 +1.2
256,434 + HGI48_RS01135 0.60 -0.4
256,434 + HGI48_RS01135 0.60 -1.2
256,434 + HGI48_RS01135 0.60 -0.5
256,435 - HGI48_RS01135 0.60 +0.4
256,435 - -0.8
256,492 + HGI48_RS01135 0.69 +0.7
256,492 + +0.8
256,492 + HGI48_RS01135 0.69 +1.0
256,492 + HGI48_RS01135 0.69 +0.8
256,492 + HGI48_RS01135 0.69 -1.5
256,493 - HGI48_RS01135 0.69 +0.0
256,493 - HGI48_RS01135 0.69 -0.6
256,629 + HGI48_RS01135 0.89 +0.6
256,630 - HGI48_RS01135 0.89 +0.9
256,630 - HGI48_RS01135 0.89 +0.3
256,630 - +2.4
256,679 + -1.4
256,680 - +0.1
256,680 - +1.6
256,801 + -0.9
256,802 - -2.4
256,802 - -0.2
256,807 + -0.5
256,807 + -0.9
256,807 + +0.2
256,807 + -1.8
256,808 - -1.3
256,808 - +0.6
256,808 - -0.2
256,808 - +0.1
256,808 - +0.5
256,808 - +0.2
256,854 - HGI48_RS01140 0.11 -1.0
256,870 + HGI48_RS01140 0.12 -0.6
256,873 + HGI48_RS01140 0.12 -0.1
256,883 + HGI48_RS01140 0.13 +0.0
256,884 - HGI48_RS01140 0.13 -1.8
256,900 - HGI48_RS01140 0.14 -1.3
256,999 - HGI48_RS01140 0.21 -1.5
257,019 + HGI48_RS01140 0.22 +0.8
257,019 + HGI48_RS01140 0.22 -0.7
257,019 + HGI48_RS01140 0.22 +0.8
257,020 - HGI48_RS01140 0.22 -0.1
257,020 - HGI48_RS01140 0.22 -0.5
257,209 + HGI48_RS01140 0.36 +0.1
257,209 + +1.6
257,209 + HGI48_RS01140 0.36 -0.1
257,209 + HGI48_RS01140 0.36 +0.9
257,210 - HGI48_RS01140 0.36 +1.0
257,210 - HGI48_RS01140 0.36 -0.6
257,210 - HGI48_RS01140 0.36 +1.3
257,249 + HGI48_RS01140 0.38 -0.2
257,249 + HGI48_RS01140 0.38 -0.9
257,249 + HGI48_RS01140 0.38 -1.8
257,249 + HGI48_RS01140 0.38 +1.4
257,301 - HGI48_RS01140 0.42 +0.1
257,307 + HGI48_RS01140 0.42 -1.2
257,307 + HGI48_RS01140 0.42 +0.1
257,307 + HGI48_RS01140 0.42 +0.6
257,407 - HGI48_RS01140 0.49 -0.0
257,437 + HGI48_RS01140 0.51 -0.2
257,527 + HGI48_RS01140 0.58 -0.2
257,527 + HGI48_RS01140 0.58 -0.6
257,551 + HGI48_RS01140 0.59 -1.1
257,551 + HGI48_RS01140 0.59 -1.5
257,552 - HGI48_RS01140 0.59 -1.2
257,552 - HGI48_RS01140 0.59 +0.1
257,562 - HGI48_RS01140 0.60 -0.4
257,574 + HGI48_RS01140 0.61 -2.0
257,575 - HGI48_RS01140 0.61 -1.8
257,575 - +1.2

Or see this region's nucleotide sequence