Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00730 and HGI48_RS00735 are separated by 549 nucleotides HGI48_RS00735 and HGI48_RS00740 overlap by 4 nucleotides
HGI48_RS00730: HGI48_RS00730 - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 166,636 to 167,913
_RS00730
HGI48_RS00735: HGI48_RS00735 - glycosyltransferase family 4 protein, at 168,463 to 169,587
_RS00735
HGI48_RS00740: HGI48_RS00740 - glycosyltransferase family 9 protein, at 169,584 to 170,690
_RS00740
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 167.927 kb on - strand at 167.927 kb on - strand at 167.927 kb on - strand at 167.927 kb on - strand at 167.951 kb on - strand at 167.951 kb on - strand at 167.953 kb on - strand at 167.957 kb on - strand at 167.957 kb on - strand at 167.957 kb on - strand at 168.042 kb on + strand at 168.084 kb on - strand at 168.124 kb on + strand at 168.136 kb on + strand at 168.161 kb on + strand at 168.189 kb on - strand at 168.190 kb on + strand at 168.224 kb on + strand at 168.225 kb on - strand at 168.228 kb on + strand at 168.228 kb on + strand at 168.228 kb on + strand at 168.229 kb on - strand at 168.245 kb on - strand at 168.370 kb on + strand at 168.371 kb on - strand at 168.388 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.415 kb on - strand at 168.415 kb on - strand at 168.417 kb on + strand at 168.420 kb on - strand at 168.435 kb on + strand at 168.442 kb on + strand at 168.442 kb on + strand at 168.451 kb on + strand at 168.451 kb on + strand at 168.451 kb on + strand at 168.451 kb on + strand at 168.457 kb on + strand at 168.479 kb on + strand at 168.483 kb on + strand at 168.485 kb on + strand at 168.738 kb on + strand, within HGI48_RS00735 at 168.738 kb on + strand, within HGI48_RS00735 at 168.738 kb on + strand at 168.862 kb on + strand at 168.862 kb on + strand, within HGI48_RS00735 at 168.863 kb on - strand at 169.215 kb on + strand at 169.551 kb on + strand at 169.807 kb on - strand, within HGI48_RS00740 at 169.875 kb on + strand, within HGI48_RS00740 at 169.876 kb on + strand, within HGI48_RS00740 at 169.877 kb on - strand, within HGI48_RS00740 at 169.880 kb on + strand at 169.893 kb on + strand, within HGI48_RS00740 at 169.928 kb on + strand, within HGI48_RS00740 at 169.928 kb on + strand, within HGI48_RS00740 at 169.929 kb on - strand, within HGI48_RS00740 at 169.929 kb on - strand, within HGI48_RS00740 at 169.988 kb on + strand, within HGI48_RS00740 at 169.988 kb on + strand, within HGI48_RS00740 at 169.989 kb on - strand, within HGI48_RS00740 at 169.989 kb on - strand, within HGI48_RS00740 at 170.149 kb on + strand, within HGI48_RS00740 at 170.235 kb on + strand, within HGI48_RS00740 at 170.237 kb on + strand, within HGI48_RS00740 at 170.237 kb on + strand, within HGI48_RS00740 at 170.237 kb on + strand, within HGI48_RS00740 at 170.273 kb on + strand, within HGI48_RS00740 at 170.417 kb on + strand, within HGI48_RS00740 at 170.436 kb on + strand, within HGI48_RS00740 at 170.486 kb on + strand, within HGI48_RS00740 at 170.487 kb on - strand at 170.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 167,927 - -0.1 167,927 - -0.5 167,927 - -0.1 167,927 - +2.4 167,951 - +0.9 167,951 - -1.1 167,953 - +0.5 167,957 - -0.0 167,957 - -2.0 167,957 - +0.5 168,042 + -0.1 168,084 - +2.7 168,124 + +0.6 168,136 + +0.4 168,161 + +0.7 168,189 - +0.3 168,190 + +1.0 168,224 + -0.1 168,225 - -0.3 168,228 + -0.5 168,228 + +0.9 168,228 + -1.3 168,229 - -0.3 168,245 - +0.3 168,370 + -1.1 168,371 - +0.6 168,388 + -2.3 168,414 + -2.3 168,414 + -0.8 168,414 + +0.2 168,414 + +1.0 168,414 + -0.1 168,414 + +0.3 168,414 + -1.0 168,415 - -1.1 168,415 - -1.7 168,417 + +0.3 168,420 - -0.1 168,435 + -0.3 168,442 + -1.0 168,442 + +0.6 168,451 + +1.6 168,451 + +0.2 168,451 + +0.9 168,451 + -0.5 168,457 + +0.6 168,479 + -0.5 168,483 + -1.7 168,485 + -0.7 168,738 + HGI48_RS00735 0.24 -1.1 168,738 + HGI48_RS00735 0.24 -1.3 168,738 + +0.9 168,862 + -0.7 168,862 + HGI48_RS00735 0.35 -0.4 168,863 - -0.1 169,215 + -0.1 169,551 + +0.9 169,807 - HGI48_RS00740 0.20 -0.6 169,875 + HGI48_RS00740 0.26 -1.2 169,876 + HGI48_RS00740 0.26 +0.6 169,877 - HGI48_RS00740 0.26 -2.0 169,880 + -0.1 169,893 + HGI48_RS00740 0.28 -2.8 169,928 + HGI48_RS00740 0.31 -0.7 169,928 + HGI48_RS00740 0.31 -1.1 169,929 - HGI48_RS00740 0.31 +1.1 169,929 - HGI48_RS00740 0.31 -0.7 169,988 + HGI48_RS00740 0.36 -1.5 169,988 + HGI48_RS00740 0.36 +0.7 169,989 - HGI48_RS00740 0.37 -2.1 169,989 - HGI48_RS00740 0.37 -1.1 170,149 + HGI48_RS00740 0.51 -1.1 170,235 + HGI48_RS00740 0.59 -1.0 170,237 + HGI48_RS00740 0.59 +0.4 170,237 + HGI48_RS00740 0.59 +0.5 170,237 + HGI48_RS00740 0.59 -0.7 170,273 + HGI48_RS00740 0.62 -2.3 170,417 + HGI48_RS00740 0.75 -0.3 170,436 + HGI48_RS00740 0.77 -0.7 170,486 + HGI48_RS00740 0.81 +0.5 170,487 - +0.3 170,495 + -0.1
Or see this region's nucleotide sequence