Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00645 and HGI48_RS00650 are separated by 193 nucleotides HGI48_RS00650 and HGI48_RS00655 are separated by 20 nucleotides HGI48_RS00655 and HGI48_RS00660 are separated by 4 nucleotides
HGI48_RS00645: HGI48_RS00645 - glutathione ABC transporter substrate-binding protein, at 152,147 to 153,703
_RS00645
HGI48_RS00650: HGI48_RS00650 - ABC transporter ATP-binding protein, at 153,897 to 155,801
_RS00650
HGI48_RS00655: HGI48_RS00655 - L-Ala-D/L-Glu epimerase, at 155,822 to 156,787
_RS00655
HGI48_RS00660: HGI48_RS00660 - DUF1611 domain-containing protein, at 156,792 to 157,799
_RS00660
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 152.945 kb on + strand, within HGI48_RS00645 at 152.967 kb on + strand, within HGI48_RS00645 at 152.968 kb on - strand, within HGI48_RS00645 at 152.972 kb on - strand, within HGI48_RS00645 at 153.030 kb on + strand, within HGI48_RS00645 at 153.030 kb on + strand, within HGI48_RS00645 at 153.030 kb on + strand, within HGI48_RS00645 at 153.031 kb on - strand, within HGI48_RS00645 at 153.039 kb on - strand, within HGI48_RS00645 at 153.039 kb on - strand, within HGI48_RS00645 at 153.072 kb on + strand, within HGI48_RS00645 at 153.072 kb on + strand, within HGI48_RS00645 at 153.072 kb on + strand, within HGI48_RS00645 at 153.072 kb on + strand, within HGI48_RS00645 at 153.073 kb on - strand, within HGI48_RS00645 at 153.073 kb on - strand, within HGI48_RS00645 at 153.073 kb on - strand, within HGI48_RS00645 at 153.081 kb on + strand, within HGI48_RS00645 at 153.082 kb on - strand at 153.082 kb on - strand, within HGI48_RS00645 at 153.104 kb on - strand, within HGI48_RS00645 at 153.253 kb on + strand, within HGI48_RS00645 at 153.254 kb on - strand, within HGI48_RS00645 at 153.307 kb on + strand, within HGI48_RS00645 at 153.307 kb on + strand at 153.307 kb on + strand, within HGI48_RS00645 at 153.308 kb on - strand, within HGI48_RS00645 at 153.308 kb on - strand, within HGI48_RS00645 at 153.308 kb on - strand, within HGI48_RS00645 at 153.308 kb on - strand, within HGI48_RS00645 at 153.372 kb on - strand, within HGI48_RS00645 at 153.463 kb on - strand, within HGI48_RS00645 at 153.543 kb on + strand, within HGI48_RS00645 at 153.543 kb on + strand, within HGI48_RS00645 at 153.543 kb on + strand, within HGI48_RS00645 at 153.543 kb on + strand at 153.543 kb on + strand, within HGI48_RS00645 at 153.544 kb on - strand, within HGI48_RS00645 at 153.544 kb on - strand, within HGI48_RS00645 at 153.584 kb on - strand at 153.594 kb on + strand at 153.594 kb on + strand at 153.594 kb on + strand at 153.595 kb on - strand at 153.595 kb on - strand at 153.595 kb on - strand at 153.595 kb on - strand at 153.595 kb on - strand at 153.595 kb on - strand at 153.689 kb on + strand at 153.689 kb on + strand at 153.689 kb on + strand at 153.690 kb on - strand at 153.690 kb on - strand at 153.847 kb on - strand at 153.849 kb on + strand at 153.850 kb on - strand at 153.856 kb on + strand at 153.857 kb on - strand at 153.873 kb on + strand at 153.873 kb on + strand at 153.873 kb on + strand at 153.873 kb on + strand at 153.877 kb on + strand at 153.877 kb on + strand at 153.877 kb on + strand at 153.877 kb on + strand at 153.878 kb on - strand at 153.878 kb on - strand at 153.878 kb on - strand at 153.878 kb on - strand at 153.878 kb on - strand at 153.878 kb on - strand at 153.878 kb on - strand at 153.878 kb on - strand at 153.887 kb on + strand at 153.888 kb on - strand at 153.888 kb on - strand at 153.888 kb on - strand at 153.888 kb on - strand at 153.891 kb on + strand at 153.891 kb on + strand at 153.891 kb on + strand at 153.891 kb on + strand at 153.892 kb on - strand at 153.892 kb on - strand at 153.892 kb on - strand at 153.906 kb on - strand at 153.913 kb on - strand at 154.102 kb on + strand at 154.165 kb on + strand, within HGI48_RS00650 at 154.165 kb on + strand, within HGI48_RS00650 at 154.165 kb on + strand, within HGI48_RS00650 at 154.165 kb on + strand, within HGI48_RS00650 at 154.166 kb on - strand, within HGI48_RS00650 at 154.166 kb on - strand, within HGI48_RS00650 at 154.166 kb on - strand, within HGI48_RS00650 at 154.166 kb on - strand, within HGI48_RS00650 at 154.166 kb on - strand, within HGI48_RS00650 at 154.166 kb on - strand, within HGI48_RS00650 at 154.166 kb on - strand at 154.166 kb on - strand, within HGI48_RS00650 at 154.166 kb on - strand, within HGI48_RS00650 at 154.166 kb on - strand, within HGI48_RS00650 at 154.365 kb on - strand, within HGI48_RS00650 at 154.399 kb on + strand, within HGI48_RS00650 at 154.400 kb on - strand, within HGI48_RS00650 at 154.816 kb on + strand, within HGI48_RS00650 at 154.816 kb on + strand, within HGI48_RS00650 at 154.816 kb on + strand, within HGI48_RS00650 at 154.816 kb on + strand, within HGI48_RS00650 at 154.816 kb on + strand, within HGI48_RS00650 at 154.816 kb on + strand at 154.816 kb on + strand at 154.816 kb on + strand, within HGI48_RS00650 at 154.817 kb on - strand at 154.817 kb on - strand, within HGI48_RS00650 at 154.817 kb on - strand, within HGI48_RS00650 at 154.817 kb on - strand, within HGI48_RS00650 at 154.817 kb on - strand, within HGI48_RS00650 at 154.817 kb on - strand, within HGI48_RS00650 at 154.817 kb on - strand, within HGI48_RS00650 at 154.817 kb on - strand, within HGI48_RS00650 at 154.817 kb on - strand at 154.817 kb on - strand, within HGI48_RS00650 at 154.858 kb on + strand, within HGI48_RS00650 at 154.859 kb on - strand, within HGI48_RS00650 at 154.872 kb on - strand, within HGI48_RS00650 at 154.922 kb on + strand, within HGI48_RS00650 at 154.922 kb on + strand, within HGI48_RS00650 at 154.984 kb on + strand, within HGI48_RS00650 at 154.984 kb on + strand at 154.985 kb on - strand, within HGI48_RS00650 at 154.985 kb on - strand, within HGI48_RS00650 at 154.985 kb on - strand, within HGI48_RS00650 at 155.009 kb on + strand, within HGI48_RS00650 at 155.048 kb on - strand, within HGI48_RS00650 at 155.048 kb on - strand, within HGI48_RS00650 at 155.048 kb on - strand, within HGI48_RS00650 at 155.282 kb on - strand, within HGI48_RS00650 at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.930 kb on - strand, within HGI48_RS00655 at 156.005 kb on + strand, within HGI48_RS00655 at 156.067 kb on - strand at 156.398 kb on + strand, within HGI48_RS00655 at 156.398 kb on + strand, within HGI48_RS00655 at 156.399 kb on - strand, within HGI48_RS00655 at 156.399 kb on - strand, within HGI48_RS00655 at 156.503 kb on + strand, within HGI48_RS00655 at 156.503 kb on + strand at 156.794 kb on - strand at 156.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 152,945 + HGI48_RS00645 0.51 -0.3 152,967 + HGI48_RS00645 0.53 -1.0 152,968 - HGI48_RS00645 0.53 -0.9 152,972 - HGI48_RS00645 0.53 +0.5 153,030 + HGI48_RS00645 0.57 -0.5 153,030 + HGI48_RS00645 0.57 -0.6 153,030 + HGI48_RS00645 0.57 +0.2 153,031 - HGI48_RS00645 0.57 +1.7 153,039 - HGI48_RS00645 0.57 -1.5 153,039 - HGI48_RS00645 0.57 -0.6 153,072 + HGI48_RS00645 0.59 +0.4 153,072 + HGI48_RS00645 0.59 -1.5 153,072 + HGI48_RS00645 0.59 -0.7 153,072 + HGI48_RS00645 0.59 +1.1 153,073 - HGI48_RS00645 0.59 -0.3 153,073 - HGI48_RS00645 0.59 +0.6 153,073 - HGI48_RS00645 0.59 +0.9 153,081 + HGI48_RS00645 0.60 +0.6 153,082 - +0.9 153,082 - HGI48_RS00645 0.60 +0.4 153,104 - HGI48_RS00645 0.61 +0.0 153,253 + HGI48_RS00645 0.71 +0.3 153,254 - HGI48_RS00645 0.71 -0.5 153,307 + HGI48_RS00645 0.75 -1.1 153,307 + +1.9 153,307 + HGI48_RS00645 0.75 -0.1 153,308 - HGI48_RS00645 0.75 +0.9 153,308 - HGI48_RS00645 0.75 +0.7 153,308 - HGI48_RS00645 0.75 -0.1 153,308 - HGI48_RS00645 0.75 -0.1 153,372 - HGI48_RS00645 0.79 -1.0 153,463 - HGI48_RS00645 0.85 -1.4 153,543 + HGI48_RS00645 0.90 -0.7 153,543 + HGI48_RS00645 0.90 -0.3 153,543 + HGI48_RS00645 0.90 -1.1 153,543 + +0.3 153,543 + HGI48_RS00645 0.90 +1.0 153,544 - HGI48_RS00645 0.90 -0.0 153,544 - HGI48_RS00645 0.90 -1.1 153,584 - -1.0 153,594 + -0.0 153,594 + -0.4 153,594 + +1.1 153,595 - -1.7 153,595 - +0.4 153,595 - -0.7 153,595 - -0.5 153,595 - -0.4 153,595 - +0.6 153,689 + -3.1 153,689 + +1.1 153,689 + +0.1 153,690 - -0.7 153,690 - -0.1 153,847 - -1.6 153,849 + -0.0 153,850 - +2.4 153,856 + +2.4 153,857 - +1.3 153,873 + +0.3 153,873 + +0.0 153,873 + -0.8 153,873 + +0.1 153,877 + -3.4 153,877 + +0.9 153,877 + -1.1 153,877 + -1.0 153,878 - -0.7 153,878 - +0.9 153,878 - +0.2 153,878 - -0.5 153,878 - +1.4 153,878 - -0.0 153,878 - +0.4 153,878 - +0.0 153,887 + +0.5 153,888 - +1.5 153,888 - +0.5 153,888 - -0.1 153,888 - +0.1 153,891 + -1.1 153,891 + +0.5 153,891 + -0.5 153,891 + -1.7 153,892 - +0.3 153,892 - +1.9 153,892 - +0.7 153,906 - -0.7 153,913 - -1.0 154,102 + +0.3 154,165 + HGI48_RS00650 0.14 -0.1 154,165 + HGI48_RS00650 0.14 +0.4 154,165 + HGI48_RS00650 0.14 -0.8 154,165 + HGI48_RS00650 0.14 +5.7 154,166 - HGI48_RS00650 0.14 +1.7 154,166 - HGI48_RS00650 0.14 +0.4 154,166 - HGI48_RS00650 0.14 +0.2 154,166 - HGI48_RS00650 0.14 -0.3 154,166 - HGI48_RS00650 0.14 +1.2 154,166 - HGI48_RS00650 0.14 -0.1 154,166 - +0.9 154,166 - HGI48_RS00650 0.14 -1.7 154,166 - HGI48_RS00650 0.14 +0.9 154,166 - HGI48_RS00650 0.14 -0.4 154,365 - HGI48_RS00650 0.25 +1.1 154,399 + HGI48_RS00650 0.26 +0.0 154,400 - HGI48_RS00650 0.26 -2.2 154,816 + HGI48_RS00650 0.48 +0.0 154,816 + HGI48_RS00650 0.48 +0.9 154,816 + HGI48_RS00650 0.48 +0.2 154,816 + HGI48_RS00650 0.48 -1.1 154,816 + HGI48_RS00650 0.48 -0.5 154,816 + -0.7 154,816 + +0.3 154,816 + HGI48_RS00650 0.48 -0.7 154,817 - -0.7 154,817 - HGI48_RS00650 0.48 -0.5 154,817 - HGI48_RS00650 0.48 +1.3 154,817 - HGI48_RS00650 0.48 +0.4 154,817 - HGI48_RS00650 0.48 -1.1 154,817 - HGI48_RS00650 0.48 -0.2 154,817 - HGI48_RS00650 0.48 +1.6 154,817 - HGI48_RS00650 0.48 -2.5 154,817 - +0.3 154,817 - HGI48_RS00650 0.48 +0.2 154,858 + HGI48_RS00650 0.50 -0.7 154,859 - HGI48_RS00650 0.50 +0.9 154,872 - HGI48_RS00650 0.51 -2.0 154,922 + HGI48_RS00650 0.54 -1.1 154,922 + HGI48_RS00650 0.54 -0.1 154,984 + HGI48_RS00650 0.57 +0.4 154,984 + +3.4 154,985 - HGI48_RS00650 0.57 -0.1 154,985 - HGI48_RS00650 0.57 -0.6 154,985 - HGI48_RS00650 0.57 -0.6 155,009 + HGI48_RS00650 0.58 -0.7 155,048 - HGI48_RS00650 0.60 -0.1 155,048 - HGI48_RS00650 0.60 +0.0 155,048 - HGI48_RS00650 0.60 +1.1 155,282 - HGI48_RS00650 0.73 -0.1 155,847 + +0.3 155,847 + -0.1 155,847 + +1.2 155,847 + -1.1 155,847 + +1.2 155,847 + -0.1 155,847 + +0.5 155,847 + -2.0 155,847 + -0.2 155,847 + -0.9 155,847 + -2.5 155,848 - +0.2 155,848 - -1.0 155,848 - -0.1 155,848 - +0.3 155,848 - -2.0 155,848 - +0.3 155,848 - +0.5 155,848 - +1.0 155,848 - +0.5 155,848 - +0.1 155,848 - +0.6 155,848 - -0.1 155,848 - +1.1 155,930 - HGI48_RS00655 0.11 -0.4 156,005 + HGI48_RS00655 0.19 -0.3 156,067 - +0.9 156,398 + HGI48_RS00655 0.60 +0.4 156,398 + HGI48_RS00655 0.60 -0.9 156,399 - HGI48_RS00655 0.60 +0.4 156,399 - HGI48_RS00655 0.60 -1.3 156,503 + HGI48_RS00655 0.70 +1.1 156,503 + +1.9 156,794 - -0.4 156,794 - -0.1
Or see this region's nucleotide sequence