Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00490

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00485 and HGI48_RS00490 overlap by 4 nucleotidesHGI48_RS00490 and HGI48_RS00495 are separated by 5 nucleotides HGI48_RS00485: HGI48_RS00485 - AMP-binding protein, at 119,648 to 121,192 _RS00485 HGI48_RS00490: HGI48_RS00490 - acyl carrier protein, at 121,189 to 121,500 _RS00490 HGI48_RS00495: HGI48_RS00495 - acyl--CoA ligase, at 121,506 to 123,089 _RS00495 Position (kb) 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 120.195 kb on + strand, within HGI48_RS00485at 120.196 kb on - strand, within HGI48_RS00485at 120.196 kb on - strandat 120.196 kb on - strand, within HGI48_RS00485at 120.196 kb on - strand, within HGI48_RS00485at 120.265 kb on + strand, within HGI48_RS00485at 120.265 kb on + strand, within HGI48_RS00485at 120.265 kb on + strand, within HGI48_RS00485at 120.266 kb on - strand, within HGI48_RS00485at 120.266 kb on - strand, within HGI48_RS00485at 120.266 kb on - strand, within HGI48_RS00485at 120.282 kb on + strand, within HGI48_RS00485at 120.283 kb on - strand, within HGI48_RS00485at 120.283 kb on - strand, within HGI48_RS00485at 120.286 kb on + strand, within HGI48_RS00485at 120.286 kb on + strand, within HGI48_RS00485at 120.286 kb on + strand, within HGI48_RS00485at 120.286 kb on + strandat 120.286 kb on + strandat 120.287 kb on - strand, within HGI48_RS00485at 120.287 kb on - strandat 120.287 kb on - strand, within HGI48_RS00485at 120.287 kb on - strand, within HGI48_RS00485at 120.287 kb on - strand, within HGI48_RS00485at 120.287 kb on - strand, within HGI48_RS00485at 120.287 kb on - strand, within HGI48_RS00485at 120.407 kb on - strandat 120.418 kb on - strand, within HGI48_RS00485at 120.418 kb on - strand, within HGI48_RS00485at 120.455 kb on + strand, within HGI48_RS00485at 120.493 kb on + strand, within HGI48_RS00485at 120.537 kb on + strand, within HGI48_RS00485at 120.541 kb on - strand, within HGI48_RS00485at 120.541 kb on - strandat 120.561 kb on + strand, within HGI48_RS00485at 120.561 kb on + strand, within HGI48_RS00485at 120.562 kb on - strand, within HGI48_RS00485at 120.562 kb on - strand, within HGI48_RS00485at 120.562 kb on - strand, within HGI48_RS00485at 120.589 kb on + strand, within HGI48_RS00485at 120.589 kb on + strand, within HGI48_RS00485at 120.589 kb on + strand, within HGI48_RS00485at 120.593 kb on - strand, within HGI48_RS00485at 120.600 kb on - strand, within HGI48_RS00485at 120.600 kb on - strand, within HGI48_RS00485at 120.605 kb on - strand, within HGI48_RS00485at 120.605 kb on - strand, within HGI48_RS00485at 120.605 kb on - strand, within HGI48_RS00485at 120.605 kb on - strand, within HGI48_RS00485at 120.605 kb on - strand, within HGI48_RS00485at 120.605 kb on - strand, within HGI48_RS00485at 120.605 kb on - strand, within HGI48_RS00485at 120.611 kb on + strand, within HGI48_RS00485at 120.611 kb on + strand, within HGI48_RS00485at 120.612 kb on - strand, within HGI48_RS00485at 120.612 kb on - strand, within HGI48_RS00485at 120.612 kb on - strand, within HGI48_RS00485at 120.612 kb on - strand, within HGI48_RS00485at 120.612 kb on - strandat 120.621 kb on - strand, within HGI48_RS00485at 120.621 kb on - strand, within HGI48_RS00485at 120.638 kb on + strand, within HGI48_RS00485at 120.639 kb on - strand, within HGI48_RS00485at 120.639 kb on - strand, within HGI48_RS00485at 120.679 kb on + strandat 120.712 kb on + strand, within HGI48_RS00485at 120.713 kb on - strand, within HGI48_RS00485at 120.714 kb on + strand, within HGI48_RS00485at 120.714 kb on + strand, within HGI48_RS00485at 120.714 kb on + strand, within HGI48_RS00485at 120.714 kb on + strand, within HGI48_RS00485at 120.714 kb on + strand, within HGI48_RS00485at 120.714 kb on + strand, within HGI48_RS00485at 120.714 kb on + strand, within HGI48_RS00485at 120.714 kb on + strand, within HGI48_RS00485at 120.714 kb on + strand, within HGI48_RS00485at 120.715 kb on - strand, within HGI48_RS00485at 120.715 kb on - strand, within HGI48_RS00485at 120.715 kb on - strand, within HGI48_RS00485at 120.715 kb on - strand, within HGI48_RS00485at 120.715 kb on - strand, within HGI48_RS00485at 120.715 kb on - strand, within HGI48_RS00485at 120.715 kb on - strand, within HGI48_RS00485at 120.715 kb on - strand, within HGI48_RS00485at 120.793 kb on + strand, within HGI48_RS00485at 120.794 kb on - strand, within HGI48_RS00485at 120.794 kb on - strand, within HGI48_RS00485at 120.800 kb on + strand, within HGI48_RS00485at 120.800 kb on + strandat 120.800 kb on + strand, within HGI48_RS00485at 120.800 kb on + strand, within HGI48_RS00485at 120.800 kb on + strandat 120.800 kb on + strand, within HGI48_RS00485at 120.800 kb on + strand, within HGI48_RS00485at 120.801 kb on - strand, within HGI48_RS00485at 120.801 kb on - strand, within HGI48_RS00485at 120.801 kb on - strand, within HGI48_RS00485at 120.801 kb on - strand, within HGI48_RS00485at 120.801 kb on - strand, within HGI48_RS00485at 120.801 kb on - strand, within HGI48_RS00485at 120.801 kb on - strand, within HGI48_RS00485at 121.002 kb on + strand, within HGI48_RS00485at 121.098 kb on + strandat 121.098 kb on + strandat 121.099 kb on - strandat 121.099 kb on - strandat 121.099 kb on - strandat 121.139 kb on + strandat 121.139 kb on + strandat 121.140 kb on - strandat 121.140 kb on - strandat 121.316 kb on + strandat 121.316 kb on + strand, within HGI48_RS00490at 121.316 kb on + strand, within HGI48_RS00490at 121.316 kb on + strand, within HGI48_RS00490at 121.316 kb on + strand, within HGI48_RS00490at 121.316 kb on + strand, within HGI48_RS00490at 121.317 kb on - strand, within HGI48_RS00490at 121.317 kb on - strandat 121.317 kb on - strand, within HGI48_RS00490at 121.317 kb on - strand, within HGI48_RS00490at 121.317 kb on - strand, within HGI48_RS00490at 121.317 kb on - strandat 121.355 kb on - strand, within HGI48_RS00490at 121.355 kb on - strandat 121.442 kb on + strand, within HGI48_RS00490at 121.442 kb on + strand, within HGI48_RS00490at 121.443 kb on - strand, within HGI48_RS00490at 121.445 kb on + strandat 121.481 kb on + strandat 121.481 kb on + strandat 121.481 kb on + strandat 121.481 kb on + strandat 121.481 kb on + strandat 121.507 kb on + strandat 121.508 kb on - strandat 121.735 kb on + strand, within HGI48_RS00495at 121.735 kb on + strandat 121.736 kb on - strand, within HGI48_RS00495at 121.803 kb on + strand, within HGI48_RS00495at 121.803 kb on + strand, within HGI48_RS00495at 121.803 kb on + strand, within HGI48_RS00495at 121.803 kb on + strand, within HGI48_RS00495at 121.803 kb on + strand, within HGI48_RS00495at 121.803 kb on + strand, within HGI48_RS00495at 121.804 kb on - strand, within HGI48_RS00495at 121.867 kb on + strand, within HGI48_RS00495at 121.868 kb on - strand, within HGI48_RS00495at 121.868 kb on - strandat 121.909 kb on + strand, within HGI48_RS00495at 121.910 kb on - strandat 121.910 kb on - strand, within HGI48_RS00495at 121.910 kb on - strand, within HGI48_RS00495at 121.910 kb on - strand, within HGI48_RS00495at 122.116 kb on + strand, within HGI48_RS00495at 122.131 kb on + strand, within HGI48_RS00495at 122.131 kb on + strand, within HGI48_RS00495at 122.131 kb on + strand, within HGI48_RS00495at 122.132 kb on - strand, within HGI48_RS00495at 122.132 kb on - strand, within HGI48_RS00495at 122.162 kb on - strand, within HGI48_RS00495at 122.162 kb on - strandat 122.162 kb on - strand, within HGI48_RS00495at 122.162 kb on - strandat 122.170 kb on + strand, within HGI48_RS00495at 122.170 kb on + strand, within HGI48_RS00495at 122.171 kb on - strand, within HGI48_RS00495at 122.171 kb on - strand, within HGI48_RS00495at 122.196 kb on - strand, within HGI48_RS00495at 122.196 kb on - strand, within HGI48_RS00495at 122.196 kb on - strand, within HGI48_RS00495at 122.388 kb on + strand, within HGI48_RS00495at 122.388 kb on + strand, within HGI48_RS00495at 122.396 kb on + strandat 122.396 kb on + strand, within HGI48_RS00495at 122.396 kb on + strand, within HGI48_RS00495at 122.396 kb on + strand, within HGI48_RS00495at 122.396 kb on + strand, within HGI48_RS00495at 122.396 kb on + strandat 122.396 kb on + strand, within HGI48_RS00495at 122.396 kb on + strand, within HGI48_RS00495at 122.397 kb on - strandat 122.397 kb on - strand, within HGI48_RS00495at 122.397 kb on - strand, within HGI48_RS00495at 122.397 kb on - strand, within HGI48_RS00495at 122.397 kb on - strand, within HGI48_RS00495at 122.397 kb on - strand, within HGI48_RS00495at 122.429 kb on - strand, within HGI48_RS00495at 122.494 kb on + strand, within HGI48_RS00495

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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120,195 + HGI48_RS00485 0.35 -0.3
120,196 - HGI48_RS00485 0.35 -0.2
120,196 - +1.3
120,196 - HGI48_RS00485 0.35 +1.3
120,196 - HGI48_RS00485 0.35 -0.1
120,265 + HGI48_RS00485 0.40 +1.9
120,265 + HGI48_RS00485 0.40 +1.1
120,265 + HGI48_RS00485 0.40 -0.7
120,266 - HGI48_RS00485 0.40 -1.0
120,266 - HGI48_RS00485 0.40 +0.9
120,266 - HGI48_RS00485 0.40 +0.1
120,282 + HGI48_RS00485 0.41 +0.6
120,283 - HGI48_RS00485 0.41 -0.1
120,283 - HGI48_RS00485 0.41 -0.1
120,286 + HGI48_RS00485 0.41 +0.7
120,286 + HGI48_RS00485 0.41 -0.5
120,286 + HGI48_RS00485 0.41 -1.3
120,286 + +2.7
120,286 + +0.3
120,287 - HGI48_RS00485 0.41 -0.5
120,287 - +0.9
120,287 - HGI48_RS00485 0.41 -0.0
120,287 - HGI48_RS00485 0.41 +0.5
120,287 - HGI48_RS00485 0.41 +1.1
120,287 - HGI48_RS00485 0.41 -1.5
120,287 - HGI48_RS00485 0.41 +0.4
120,407 - +0.9
120,418 - HGI48_RS00485 0.50 -0.7
120,418 - HGI48_RS00485 0.50 -0.1
120,455 + HGI48_RS00485 0.52 +1.5
120,493 + HGI48_RS00485 0.55 +1.3
120,537 + HGI48_RS00485 0.58 +0.9
120,541 - HGI48_RS00485 0.58 -0.3
120,541 - +0.3
120,561 + HGI48_RS00485 0.59 -0.1
120,561 + HGI48_RS00485 0.59 +0.3
120,562 - HGI48_RS00485 0.59 -0.1
120,562 - HGI48_RS00485 0.59 +1.7
120,562 - HGI48_RS00485 0.59 +0.0
120,589 + HGI48_RS00485 0.61 +0.0
120,589 + HGI48_RS00485 0.61 +0.0
120,589 + HGI48_RS00485 0.61 +1.0
120,593 - HGI48_RS00485 0.61 +1.2
120,600 - HGI48_RS00485 0.62 +0.9
120,600 - HGI48_RS00485 0.62 -0.1
120,605 - HGI48_RS00485 0.62 -0.1
120,605 - HGI48_RS00485 0.62 +1.2
120,605 - HGI48_RS00485 0.62 +1.4
120,605 - HGI48_RS00485 0.62 -1.5
120,605 - HGI48_RS00485 0.62 +0.9
120,605 - HGI48_RS00485 0.62 -0.3
120,605 - HGI48_RS00485 0.62 -0.3
120,611 + HGI48_RS00485 0.62 -2.0
120,611 + HGI48_RS00485 0.62 -1.1
120,612 - HGI48_RS00485 0.62 -0.5
120,612 - HGI48_RS00485 0.62 +1.4
120,612 - HGI48_RS00485 0.62 -1.3
120,612 - HGI48_RS00485 0.62 -1.1
120,612 - +3.2
120,621 - HGI48_RS00485 0.63 -0.6
120,621 - HGI48_RS00485 0.63 -0.3
120,638 + HGI48_RS00485 0.64 -0.6
120,639 - HGI48_RS00485 0.64 +0.2
120,639 - HGI48_RS00485 0.64 +0.1
120,679 + +0.3
120,712 + HGI48_RS00485 0.69 -0.5
120,713 - HGI48_RS00485 0.69 +0.3
120,714 + HGI48_RS00485 0.69 -1.1
120,714 + HGI48_RS00485 0.69 -1.1
120,714 + HGI48_RS00485 0.69 -2.0
120,714 + HGI48_RS00485 0.69 -1.7
120,714 + HGI48_RS00485 0.69 +0.7
120,714 + HGI48_RS00485 0.69 -0.1
120,714 + HGI48_RS00485 0.69 +1.0
120,714 + HGI48_RS00485 0.69 -0.6
120,714 + HGI48_RS00485 0.69 -3.1
120,715 - HGI48_RS00485 0.69 +1.5
120,715 - HGI48_RS00485 0.69 +0.5
120,715 - HGI48_RS00485 0.69 -1.3
120,715 - HGI48_RS00485 0.69 +0.2
120,715 - HGI48_RS00485 0.69 +1.2
120,715 - HGI48_RS00485 0.69 -0.3
120,715 - HGI48_RS00485 0.69 -1.1
120,715 - HGI48_RS00485 0.69 -0.8
120,793 + HGI48_RS00485 0.74 +0.1
120,794 - HGI48_RS00485 0.74 -1.1
120,794 - HGI48_RS00485 0.74 +0.4
120,800 + HGI48_RS00485 0.75 +0.9
120,800 + +2.4
120,800 + HGI48_RS00485 0.75 -0.6
120,800 + HGI48_RS00485 0.75 -0.5
120,800 + +0.3
120,800 + HGI48_RS00485 0.75 +0.5
120,800 + HGI48_RS00485 0.75 +0.2
120,801 - HGI48_RS00485 0.75 -0.4
120,801 - HGI48_RS00485 0.75 -1.4
120,801 - HGI48_RS00485 0.75 -0.1
120,801 - HGI48_RS00485 0.75 -2.0
120,801 - HGI48_RS00485 0.75 +1.2
120,801 - HGI48_RS00485 0.75 -1.7
120,801 - HGI48_RS00485 0.75 +0.3
121,002 + HGI48_RS00485 0.88 +0.3
121,098 + -0.5
121,098 + -2.0
121,099 - +0.9
121,099 - -1.5
121,099 - +0.3
121,139 + -0.9
121,139 + -1.1
121,140 - +1.5
121,140 - +1.5
121,316 + +2.4
121,316 + HGI48_RS00490 0.41 +1.2
121,316 + HGI48_RS00490 0.41 +0.9
121,316 + HGI48_RS00490 0.41 +0.4
121,316 + HGI48_RS00490 0.41 +0.9
121,316 + HGI48_RS00490 0.41 +0.6
121,317 - HGI48_RS00490 0.41 +0.3
121,317 - +0.9
121,317 - HGI48_RS00490 0.41 -0.3
121,317 - HGI48_RS00490 0.41 -2.0
121,317 - HGI48_RS00490 0.41 +1.1
121,317 - +1.4
121,355 - HGI48_RS00490 0.53 +0.2
121,355 - -0.7
121,442 + HGI48_RS00490 0.81 -0.7
121,442 + HGI48_RS00490 0.81 -0.7
121,443 - HGI48_RS00490 0.81 +0.9
121,445 + +2.4
121,481 + -0.7
121,481 + +1.4
121,481 + -0.3
121,481 + +1.9
121,481 + +0.9
121,507 + -0.1
121,508 - +1.3
121,735 + HGI48_RS00495 0.14 +0.1
121,735 + +0.9
121,736 - HGI48_RS00495 0.15 -0.9
121,803 + HGI48_RS00495 0.19 +1.4
121,803 + HGI48_RS00495 0.19 -1.1
121,803 + HGI48_RS00495 0.19 -0.1
121,803 + HGI48_RS00495 0.19 +0.4
121,803 + HGI48_RS00495 0.19 -0.1
121,803 + HGI48_RS00495 0.19 -0.3
121,804 - HGI48_RS00495 0.19 -0.4
121,867 + HGI48_RS00495 0.23 +0.1
121,868 - HGI48_RS00495 0.23 -0.7
121,868 - +0.3
121,909 + HGI48_RS00495 0.25 -1.6
121,910 - +1.9
121,910 - HGI48_RS00495 0.26 +0.4
121,910 - HGI48_RS00495 0.26 +0.4
121,910 - HGI48_RS00495 0.26 -0.9
122,116 + HGI48_RS00495 0.39 -1.2
122,131 + HGI48_RS00495 0.39 -0.6
122,131 + HGI48_RS00495 0.39 +0.1
122,131 + HGI48_RS00495 0.39 +0.4
122,132 - HGI48_RS00495 0.40 -0.6
122,132 - HGI48_RS00495 0.40 -0.7
122,162 - HGI48_RS00495 0.41 -1.0
122,162 - -0.7
122,162 - HGI48_RS00495 0.41 +1.3
122,162 - +0.3
122,170 + HGI48_RS00495 0.42 +1.1
122,170 + HGI48_RS00495 0.42 -1.1
122,171 - HGI48_RS00495 0.42 -0.5
122,171 - HGI48_RS00495 0.42 -0.7
122,196 - HGI48_RS00495 0.44 +0.1
122,196 - HGI48_RS00495 0.44 -2.3
122,196 - HGI48_RS00495 0.44 -0.1
122,388 + HGI48_RS00495 0.56 +1.3
122,388 + HGI48_RS00495 0.56 -1.7
122,396 + +1.3
122,396 + HGI48_RS00495 0.56 +1.2
122,396 + HGI48_RS00495 0.56 +0.1
122,396 + HGI48_RS00495 0.56 -2.5
122,396 + HGI48_RS00495 0.56 -1.5
122,396 + -0.1
122,396 + HGI48_RS00495 0.56 -1.3
122,396 + HGI48_RS00495 0.56 -0.7
122,397 - +0.9
122,397 - HGI48_RS00495 0.56 -0.3
122,397 - HGI48_RS00495 0.56 +0.3
122,397 - HGI48_RS00495 0.56 -0.1
122,397 - HGI48_RS00495 0.56 -1.1
122,397 - HGI48_RS00495 0.56 +0.9
122,429 - HGI48_RS00495 0.58 +0.1
122,494 + HGI48_RS00495 0.62 -0.3

Or see this region's nucleotide sequence