Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00060 and HGI48_RS00065 are separated by 321 nucleotides HGI48_RS00065 and HGI48_RS00070 are separated by 542 nucleotides
HGI48_RS00060: HGI48_RS00060 - ribonuclease Z, at 16,688 to 17,602
_RS00060
HGI48_RS00065: HGI48_RS00065 - glutathione-disulfide reductase, at 17,924 to 19,276
_RS00065
HGI48_RS00070: HGI48_RS00070 - MBOAT family protein, at 19,819 to 21,234
_RS00070
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.981 kb on + strand, within HGI48_RS00060 at 16.982 kb on - strand, within HGI48_RS00060 at 16.982 kb on - strand, within HGI48_RS00060 at 17.016 kb on + strand, within HGI48_RS00060 at 17.016 kb on + strand, within HGI48_RS00060 at 17.016 kb on + strand, within HGI48_RS00060 at 17.017 kb on - strand, within HGI48_RS00060 at 17.017 kb on - strand, within HGI48_RS00060 at 17.017 kb on - strand, within HGI48_RS00060 at 17.086 kb on - strand, within HGI48_RS00060 at 17.123 kb on + strand, within HGI48_RS00060 at 17.124 kb on - strand, within HGI48_RS00060 at 17.124 kb on - strand, within HGI48_RS00060 at 17.124 kb on - strand, within HGI48_RS00060 at 17.176 kb on - strand at 17.176 kb on - strand, within HGI48_RS00060 at 17.176 kb on - strand, within HGI48_RS00060 at 17.176 kb on - strand, within HGI48_RS00060 at 17.176 kb on - strand, within HGI48_RS00060 at 17.209 kb on + strand, within HGI48_RS00060 at 17.209 kb on + strand, within HGI48_RS00060 at 17.291 kb on - strand, within HGI48_RS00060 at 17.291 kb on - strand at 17.362 kb on + strand, within HGI48_RS00060 at 17.363 kb on - strand, within HGI48_RS00060 at 17.551 kb on + strand at 17.552 kb on - strand at 17.619 kb on + strand at 17.648 kb on + strand at 17.649 kb on - strand at 17.649 kb on - strand at 17.649 kb on - strand at 17.649 kb on - strand at 17.700 kb on + strand at 17.700 kb on + strand at 17.700 kb on + strand at 17.700 kb on + strand at 17.700 kb on + strand at 17.701 kb on - strand at 17.701 kb on - strand at 17.701 kb on - strand at 17.701 kb on - strand at 17.701 kb on - strand at 17.781 kb on - strand at 17.823 kb on + strand at 17.823 kb on + strand at 17.824 kb on - strand at 17.878 kb on + strand at 17.878 kb on + strand at 17.878 kb on + strand at 17.878 kb on + strand at 17.882 kb on + strand at 17.882 kb on + strand at 17.882 kb on + strand at 17.888 kb on + strand at 17.900 kb on - strand at 17.936 kb on + strand at 17.936 kb on + strand at 17.936 kb on + strand at 17.937 kb on - strand at 17.937 kb on - strand at 17.942 kb on + strand at 17.942 kb on + strand at 17.942 kb on + strand at 17.942 kb on + strand at 17.999 kb on + strand at 17.999 kb on + strand at 18.000 kb on - strand at 18.000 kb on - strand at 18.000 kb on - strand at 18.131 kb on + strand, within HGI48_RS00065 at 18.161 kb on - strand, within HGI48_RS00065 at 18.161 kb on - strand, within HGI48_RS00065 at 18.194 kb on + strand, within HGI48_RS00065 at 18.194 kb on + strand, within HGI48_RS00065 at 18.194 kb on + strand at 18.195 kb on - strand, within HGI48_RS00065 at 18.195 kb on - strand, within HGI48_RS00065 at 18.195 kb on - strand at 18.195 kb on - strand at 18.195 kb on - strand, within HGI48_RS00065 at 18.218 kb on + strand, within HGI48_RS00065 at 18.218 kb on + strand, within HGI48_RS00065 at 18.218 kb on + strand at 18.219 kb on - strand, within HGI48_RS00065 at 18.219 kb on - strand, within HGI48_RS00065 at 18.219 kb on - strand, within HGI48_RS00065 at 18.453 kb on - strand, within HGI48_RS00065 at 18.453 kb on - strand, within HGI48_RS00065 at 18.454 kb on + strand, within HGI48_RS00065 at 18.580 kb on + strand, within HGI48_RS00065 at 18.727 kb on + strand, within HGI48_RS00065 at 18.728 kb on - strand, within HGI48_RS00065 at 18.728 kb on - strand, within HGI48_RS00065 at 18.760 kb on + strand, within HGI48_RS00065 at 18.761 kb on - strand, within HGI48_RS00065 at 18.773 kb on + strand, within HGI48_RS00065 at 18.773 kb on + strand, within HGI48_RS00065 at 18.774 kb on - strand, within HGI48_RS00065 at 18.818 kb on + strand, within HGI48_RS00065 at 18.818 kb on + strand, within HGI48_RS00065 at 18.819 kb on - strand, within HGI48_RS00065 at 18.929 kb on + strand, within HGI48_RS00065 at 18.930 kb on - strand, within HGI48_RS00065 at 18.948 kb on + strand, within HGI48_RS00065 at 18.948 kb on + strand, within HGI48_RS00065 at 18.948 kb on + strand, within HGI48_RS00065 at 18.948 kb on + strand, within HGI48_RS00065 at 18.949 kb on - strand, within HGI48_RS00065 at 18.949 kb on - strand, within HGI48_RS00065 at 18.951 kb on + strand, within HGI48_RS00065 at 18.952 kb on - strand, within HGI48_RS00065 at 19.055 kb on - strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand at 19.058 kb on + strand at 19.059 kb on - strand at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.093 kb on + strand, within HGI48_RS00065 at 19.138 kb on - strand, within HGI48_RS00065 at 19.157 kb on - strand at 19.267 kb on + strand at 19.268 kb on - strand at 19.279 kb on + strand at 19.279 kb on + strand at 19.280 kb on - strand at 19.298 kb on + strand at 19.320 kb on - strand at 19.337 kb on - strand at 19.337 kb on - strand at 19.400 kb on + strand at 19.428 kb on + strand at 19.428 kb on + strand at 19.428 kb on + strand at 19.429 kb on - strand at 19.513 kb on - strand at 19.566 kb on + strand at 19.616 kb on + strand at 19.671 kb on + strand at 19.672 kb on - strand at 19.728 kb on + strand at 19.812 kb on + strand at 20.033 kb on - strand, within HGI48_RS00070 at 20.108 kb on - strand, within HGI48_RS00070 at 20.149 kb on + strand, within HGI48_RS00070 at 20.201 kb on + strand, within HGI48_RS00070 at 20.209 kb on + strand, within HGI48_RS00070 at 20.209 kb on + strand, within HGI48_RS00070 at 20.213 kb on + strand at 20.214 kb on - strand, within HGI48_RS00070
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 16,981 + HGI48_RS00060 0.32 -2.6 16,982 - HGI48_RS00060 0.32 -1.0 16,982 - HGI48_RS00060 0.32 -2.0 17,016 + HGI48_RS00060 0.36 -0.5 17,016 + HGI48_RS00060 0.36 -0.9 17,016 + HGI48_RS00060 0.36 -2.1 17,017 - HGI48_RS00060 0.36 -0.4 17,017 - HGI48_RS00060 0.36 +0.7 17,017 - HGI48_RS00060 0.36 -0.3 17,086 - HGI48_RS00060 0.43 -1.5 17,123 + HGI48_RS00060 0.48 +0.3 17,124 - HGI48_RS00060 0.48 -0.3 17,124 - HGI48_RS00060 0.48 -0.7 17,124 - HGI48_RS00060 0.48 -0.5 17,176 - +1.3 17,176 - HGI48_RS00060 0.53 -1.0 17,176 - HGI48_RS00060 0.53 +0.9 17,176 - HGI48_RS00060 0.53 -1.1 17,176 - HGI48_RS00060 0.53 +0.2 17,209 + HGI48_RS00060 0.57 +1.6 17,209 + HGI48_RS00060 0.57 -1.5 17,291 - HGI48_RS00060 0.66 -1.1 17,291 - +1.3 17,362 + HGI48_RS00060 0.74 +0.9 17,363 - HGI48_RS00060 0.74 -0.5 17,551 + +0.1 17,552 - +0.0 17,619 + -1.1 17,648 + +1.3 17,649 - -0.7 17,649 - -1.1 17,649 - -1.7 17,649 - -1.1 17,700 + +0.3 17,700 + -0.7 17,700 + +0.5 17,700 + -0.3 17,700 + -1.1 17,701 - -0.5 17,701 - +1.1 17,701 - -0.0 17,701 - -1.0 17,701 - +0.9 17,781 - -0.1 17,823 + +0.4 17,823 + -1.5 17,824 - +1.9 17,878 + -0.1 17,878 + +0.3 17,878 + +0.3 17,878 + -0.1 17,882 + -1.5 17,882 + +0.3 17,882 + +0.4 17,888 + -1.5 17,900 - -0.5 17,936 + +0.6 17,936 + +0.0 17,936 + -1.1 17,937 - -3.0 17,937 - +1.5 17,942 + -0.6 17,942 + -1.0 17,942 + +0.0 17,942 + +0.7 17,999 + +0.4 17,999 + +0.0 18,000 - -1.1 18,000 - -0.2 18,000 - -0.6 18,131 + HGI48_RS00065 0.15 -2.3 18,161 - HGI48_RS00065 0.18 -0.7 18,161 - HGI48_RS00065 0.18 -2.0 18,194 + HGI48_RS00065 0.20 -1.0 18,194 + HGI48_RS00065 0.20 -0.4 18,194 + -0.1 18,195 - HGI48_RS00065 0.20 -1.0 18,195 - HGI48_RS00065 0.20 +0.4 18,195 - +2.1 18,195 - +0.3 18,195 - HGI48_RS00065 0.20 -1.5 18,218 + HGI48_RS00065 0.22 -0.7 18,218 + HGI48_RS00065 0.22 +0.9 18,218 + +0.3 18,219 - HGI48_RS00065 0.22 +1.0 18,219 - HGI48_RS00065 0.22 +0.4 18,219 - HGI48_RS00065 0.22 -0.9 18,453 - HGI48_RS00065 0.39 +0.1 18,453 - HGI48_RS00065 0.39 -1.3 18,454 + HGI48_RS00065 0.39 -1.4 18,580 + HGI48_RS00065 0.48 -2.3 18,727 + HGI48_RS00065 0.59 +0.0 18,728 - HGI48_RS00065 0.59 -1.6 18,728 - HGI48_RS00065 0.59 -0.1 18,760 + HGI48_RS00065 0.62 -0.0 18,761 - HGI48_RS00065 0.62 +1.4 18,773 + HGI48_RS00065 0.63 -0.5 18,773 + HGI48_RS00065 0.63 -1.7 18,774 - HGI48_RS00065 0.63 -0.3 18,818 + HGI48_RS00065 0.66 -0.3 18,818 + HGI48_RS00065 0.66 -0.7 18,819 - HGI48_RS00065 0.66 -1.7 18,929 + HGI48_RS00065 0.74 -0.1 18,930 - HGI48_RS00065 0.74 -0.8 18,948 + HGI48_RS00065 0.76 +0.1 18,948 + HGI48_RS00065 0.76 +0.0 18,948 + HGI48_RS00065 0.76 +0.7 18,948 + HGI48_RS00065 0.76 -1.2 18,949 - HGI48_RS00065 0.76 -0.1 18,949 - HGI48_RS00065 0.76 -0.3 18,951 + HGI48_RS00065 0.76 -0.3 18,952 - HGI48_RS00065 0.76 -0.2 19,055 - HGI48_RS00065 0.84 -0.1 19,058 + HGI48_RS00065 0.84 +0.2 19,058 + HGI48_RS00065 0.84 -0.3 19,058 + HGI48_RS00065 0.84 -0.5 19,058 + HGI48_RS00065 0.84 -1.3 19,058 + HGI48_RS00065 0.84 -2.0 19,058 + HGI48_RS00065 0.84 -0.7 19,058 + HGI48_RS00065 0.84 -0.5 19,058 + HGI48_RS00065 0.84 -1.3 19,058 + HGI48_RS00065 0.84 -1.1 19,058 + +1.4 19,058 + +0.9 19,059 - +0.3 19,059 - HGI48_RS00065 0.84 -0.4 19,059 - HGI48_RS00065 0.84 +1.1 19,059 - HGI48_RS00065 0.84 -0.3 19,059 - HGI48_RS00065 0.84 -1.1 19,059 - HGI48_RS00065 0.84 -0.5 19,059 - HGI48_RS00065 0.84 -0.1 19,059 - HGI48_RS00065 0.84 -0.3 19,059 - HGI48_RS00065 0.84 -1.0 19,059 - HGI48_RS00065 0.84 -1.5 19,059 - HGI48_RS00065 0.84 +0.0 19,093 + HGI48_RS00065 0.86 -0.5 19,138 - HGI48_RS00065 0.90 -1.5 19,157 - +1.7 19,267 + +0.1 19,268 - -0.4 19,279 + -0.5 19,279 + -0.2 19,280 - +1.5 19,298 + +0.5 19,320 - -0.6 19,337 - -1.5 19,337 - +0.7 19,400 + +0.7 19,428 + +0.3 19,428 + -0.1 19,428 + -1.1 19,429 - -0.4 19,513 - -1.7 19,566 + -0.1 19,616 + -1.1 19,671 + +0.0 19,672 - -0.5 19,728 + -1.3 19,812 + +1.9 20,033 - HGI48_RS00070 0.15 -2.8 20,108 - HGI48_RS00070 0.20 -1.3 20,149 + HGI48_RS00070 0.23 +0.1 20,201 + HGI48_RS00070 0.27 -1.1 20,209 + HGI48_RS00070 0.28 +0.5 20,209 + HGI48_RS00070 0.28 -0.1 20,213 + +1.3 20,214 - HGI48_RS00070 0.28 +0.3
Or see this region's nucleotide sequence