Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19250 and HGI48_RS19255 are separated by 134 nucleotides HGI48_RS19255 and HGI48_RS19260 are separated by 40 nucleotides HGI48_RS19260 and HGI48_RS19265 are separated by 25 nucleotides HGI48_RS19265 and HGI48_RS19270 are separated by 30 nucleotides
HGI48_RS19250: HGI48_RS19250 - DUF1992 domain-containing protein, at 4,321,900 to 4,322,286
_RS19250
HGI48_RS19255: HGI48_RS19255 - 50S ribosomal protein L17, at 4,322,421 to 4,322,813
_RS19255
HGI48_RS19260: HGI48_RS19260 - DNA-directed RNA polymerase subunit alpha, at 4,322,854 to 4,323,843
_RS19260
HGI48_RS19265: HGI48_RS19265 - 30S ribosomal protein S4, at 4,323,869 to 4,324,489
_RS19265
HGI48_RS19270: HGI48_RS19270 - 30S ribosomal protein S11, at 4,324,520 to 4,324,909
_RS19270
Position (kb)
4322
4323
4324 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4321.863 kb on + strand at 4321.863 kb on + strand at 4321.863 kb on + strand at 4321.863 kb on + strand at 4321.864 kb on - strand at 4321.864 kb on - strand at 4321.875 kb on + strand at 4321.875 kb on + strand at 4321.875 kb on + strand at 4321.889 kb on + strand at 4321.920 kb on + strand at 4321.920 kb on + strand at 4321.921 kb on - strand at 4321.921 kb on - strand at 4321.921 kb on - strand at 4321.921 kb on - strand at 4321.930 kb on + strand at 4321.942 kb on + strand, within HGI48_RS19250 at 4321.943 kb on - strand, within HGI48_RS19250 at 4321.943 kb on - strand, within HGI48_RS19250 at 4321.943 kb on - strand, within HGI48_RS19250 at 4321.943 kb on - strand, within HGI48_RS19250 at 4322.002 kb on + strand, within HGI48_RS19250 at 4322.039 kb on + strand, within HGI48_RS19250 at 4322.040 kb on - strand, within HGI48_RS19250 at 4322.044 kb on + strand, within HGI48_RS19250 at 4322.044 kb on + strand, within HGI48_RS19250 at 4322.044 kb on + strand, within HGI48_RS19250 at 4322.044 kb on + strand, within HGI48_RS19250 at 4322.045 kb on - strand, within HGI48_RS19250 at 4322.045 kb on - strand, within HGI48_RS19250 at 4322.147 kb on + strand, within HGI48_RS19250 at 4322.158 kb on + strand, within HGI48_RS19250 at 4322.158 kb on + strand, within HGI48_RS19250 at 4322.158 kb on + strand, within HGI48_RS19250 at 4322.158 kb on + strand, within HGI48_RS19250 at 4322.159 kb on - strand, within HGI48_RS19250 at 4322.253 kb on + strand at 4322.277 kb on + strand at 4322.278 kb on - strand at 4322.286 kb on + strand at 4322.286 kb on + strand at 4322.286 kb on + strand at 4322.287 kb on - strand at 4322.287 kb on - strand at 4322.315 kb on + strand at 4322.315 kb on + strand at 4322.315 kb on + strand at 4322.316 kb on - strand at 4322.322 kb on + strand at 4322.323 kb on - strand at 4322.323 kb on - strand at 4322.352 kb on - strand at 4322.352 kb on - strand at 4322.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,321,863 + -0.2 4,321,863 + -1.7 4,321,863 + -1.5 4,321,863 + -0.2 4,321,864 - +1.4 4,321,864 - -0.7 4,321,875 + -0.4 4,321,875 + -0.4 4,321,875 + -0.0 4,321,889 + -0.0 4,321,920 + +2.1 4,321,920 + -0.2 4,321,921 - +0.3 4,321,921 - +0.4 4,321,921 - -0.4 4,321,921 - +0.6 4,321,930 + -0.5 4,321,942 + HGI48_RS19250 0.11 -0.7 4,321,943 - HGI48_RS19250 0.11 -0.2 4,321,943 - HGI48_RS19250 0.11 +0.1 4,321,943 - HGI48_RS19250 0.11 -0.6 4,321,943 - HGI48_RS19250 0.11 -0.5 4,322,002 + HGI48_RS19250 0.26 -1.3 4,322,039 + HGI48_RS19250 0.36 +1.2 4,322,040 - HGI48_RS19250 0.36 -0.7 4,322,044 + HGI48_RS19250 0.37 -0.7 4,322,044 + HGI48_RS19250 0.37 -0.3 4,322,044 + HGI48_RS19250 0.37 -0.2 4,322,044 + HGI48_RS19250 0.37 +0.3 4,322,045 - HGI48_RS19250 0.37 -1.5 4,322,045 - HGI48_RS19250 0.37 -0.4 4,322,147 + HGI48_RS19250 0.64 -1.5 4,322,158 + HGI48_RS19250 0.67 -0.7 4,322,158 + HGI48_RS19250 0.67 -1.0 4,322,158 + HGI48_RS19250 0.67 -1.2 4,322,158 + HGI48_RS19250 0.67 +1.3 4,322,159 - HGI48_RS19250 0.67 +0.2 4,322,253 + -0.5 4,322,277 + -0.3 4,322,278 - +0.6 4,322,286 + -0.7 4,322,286 + -0.6 4,322,286 + -0.3 4,322,287 - +1.2 4,322,287 - -1.0 4,322,315 + +1.4 4,322,315 + +0.8 4,322,315 + +0.1 4,322,316 - +0.8 4,322,322 + +0.8 4,322,323 - +1.4 4,322,323 - -1.6 4,322,352 - +0.5 4,322,352 - +0.7 4,322,367 - -2.0
Or see this region's nucleotide sequence