Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19260

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19250 and HGI48_RS19255 are separated by 134 nucleotidesHGI48_RS19255 and HGI48_RS19260 are separated by 40 nucleotidesHGI48_RS19260 and HGI48_RS19265 are separated by 25 nucleotidesHGI48_RS19265 and HGI48_RS19270 are separated by 30 nucleotides HGI48_RS19250: HGI48_RS19250 - DUF1992 domain-containing protein, at 4,321,900 to 4,322,286 _RS19250 HGI48_RS19255: HGI48_RS19255 - 50S ribosomal protein L17, at 4,322,421 to 4,322,813 _RS19255 HGI48_RS19260: HGI48_RS19260 - DNA-directed RNA polymerase subunit alpha, at 4,322,854 to 4,323,843 _RS19260 HGI48_RS19265: HGI48_RS19265 - 30S ribosomal protein S4, at 4,323,869 to 4,324,489 _RS19265 HGI48_RS19270: HGI48_RS19270 - 30S ribosomal protein S11, at 4,324,520 to 4,324,909 _RS19270 Position (kb) 4322 4323 4324Strain fitness (log2 ratio) -2 -1 0 1 2at 4321.863 kb on + strandat 4321.863 kb on + strandat 4321.863 kb on + strandat 4321.863 kb on + strandat 4321.864 kb on - strandat 4321.864 kb on - strandat 4321.875 kb on + strandat 4321.875 kb on + strandat 4321.875 kb on + strandat 4321.889 kb on + strandat 4321.920 kb on + strandat 4321.920 kb on + strandat 4321.921 kb on - strandat 4321.921 kb on - strandat 4321.921 kb on - strandat 4321.921 kb on - strandat 4321.930 kb on + strandat 4321.942 kb on + strand, within HGI48_RS19250at 4321.943 kb on - strand, within HGI48_RS19250at 4321.943 kb on - strand, within HGI48_RS19250at 4321.943 kb on - strand, within HGI48_RS19250at 4321.943 kb on - strand, within HGI48_RS19250at 4322.002 kb on + strand, within HGI48_RS19250at 4322.039 kb on + strand, within HGI48_RS19250at 4322.040 kb on - strand, within HGI48_RS19250at 4322.044 kb on + strand, within HGI48_RS19250at 4322.044 kb on + strand, within HGI48_RS19250at 4322.044 kb on + strand, within HGI48_RS19250at 4322.044 kb on + strand, within HGI48_RS19250at 4322.045 kb on - strand, within HGI48_RS19250at 4322.045 kb on - strand, within HGI48_RS19250at 4322.147 kb on + strand, within HGI48_RS19250at 4322.158 kb on + strand, within HGI48_RS19250at 4322.158 kb on + strand, within HGI48_RS19250at 4322.158 kb on + strand, within HGI48_RS19250at 4322.158 kb on + strand, within HGI48_RS19250at 4322.159 kb on - strand, within HGI48_RS19250at 4322.253 kb on + strandat 4322.277 kb on + strandat 4322.278 kb on - strandat 4322.286 kb on + strandat 4322.286 kb on + strandat 4322.286 kb on + strandat 4322.287 kb on - strandat 4322.287 kb on - strandat 4322.315 kb on + strandat 4322.315 kb on + strandat 4322.315 kb on + strandat 4322.316 kb on - strandat 4322.322 kb on + strandat 4322.323 kb on - strandat 4322.323 kb on - strandat 4322.352 kb on - strandat 4322.352 kb on - strandat 4322.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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4,321,863 + -0.2
4,321,863 + -1.7
4,321,863 + -1.5
4,321,863 + -0.2
4,321,864 - +1.4
4,321,864 - -0.7
4,321,875 + -0.4
4,321,875 + -0.4
4,321,875 + -0.0
4,321,889 + -0.0
4,321,920 + +2.1
4,321,920 + -0.2
4,321,921 - +0.3
4,321,921 - +0.4
4,321,921 - -0.4
4,321,921 - +0.6
4,321,930 + -0.5
4,321,942 + HGI48_RS19250 0.11 -0.7
4,321,943 - HGI48_RS19250 0.11 -0.2
4,321,943 - HGI48_RS19250 0.11 +0.1
4,321,943 - HGI48_RS19250 0.11 -0.6
4,321,943 - HGI48_RS19250 0.11 -0.5
4,322,002 + HGI48_RS19250 0.26 -1.3
4,322,039 + HGI48_RS19250 0.36 +1.2
4,322,040 - HGI48_RS19250 0.36 -0.7
4,322,044 + HGI48_RS19250 0.37 -0.7
4,322,044 + HGI48_RS19250 0.37 -0.3
4,322,044 + HGI48_RS19250 0.37 -0.2
4,322,044 + HGI48_RS19250 0.37 +0.3
4,322,045 - HGI48_RS19250 0.37 -1.5
4,322,045 - HGI48_RS19250 0.37 -0.4
4,322,147 + HGI48_RS19250 0.64 -1.5
4,322,158 + HGI48_RS19250 0.67 -0.7
4,322,158 + HGI48_RS19250 0.67 -1.0
4,322,158 + HGI48_RS19250 0.67 -1.2
4,322,158 + HGI48_RS19250 0.67 +1.3
4,322,159 - HGI48_RS19250 0.67 +0.2
4,322,253 + -0.5
4,322,277 + -0.3
4,322,278 - +0.6
4,322,286 + -0.7
4,322,286 + -0.6
4,322,286 + -0.3
4,322,287 - +1.2
4,322,287 - -1.0
4,322,315 + +1.4
4,322,315 + +0.8
4,322,315 + +0.1
4,322,316 - +0.8
4,322,322 + +0.8
4,322,323 - +1.4
4,322,323 - -1.6
4,322,352 - +0.5
4,322,352 - +0.7
4,322,367 - -2.0

Or see this region's nucleotide sequence