Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18190

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS18185 and HGI48_RS18190 are separated by 112 nucleotidesHGI48_RS18190 and HGI48_RS18195 overlap by 1 nucleotidesHGI48_RS18195 and HGI48_RS18200 overlap by 8 nucleotides HGI48_RS18185: HGI48_RS18185 - LPS assembly protein LptD, at 4,080,010 to 4,082,421 _RS18185 HGI48_RS18190: HGI48_RS18190 - peptidylprolyl isomerase SurA, at 4,082,534 to 4,083,826 _RS18190 HGI48_RS18195: HGI48_RS18195 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,083,826 to 4,084,827 _RS18195 HGI48_RS18200: HGI48_RS18200 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 4,084,820 to 4,085,638 _RS18200 Position (kb) 4082 4083 4084Strain fitness (log2 ratio) -2 -1 0 1at 4082.359 kb on + strandat 4082.431 kb on - strandat 4082.436 kb on + strandat 4082.436 kb on + strandat 4082.436 kb on + strandat 4082.441 kb on + strandat 4082.441 kb on + strandat 4082.441 kb on + strandat 4082.441 kb on + strandat 4082.441 kb on + strandat 4082.441 kb on + strandat 4082.442 kb on - strandat 4082.442 kb on - strandat 4082.442 kb on - strandat 4082.465 kb on + strandat 4082.473 kb on + strandat 4084.120 kb on + strand, within HGI48_RS18195at 4084.121 kb on - strand, within HGI48_RS18195at 4084.209 kb on + strand, within HGI48_RS18195at 4084.224 kb on + strand, within HGI48_RS18195at 4084.444 kb on + strand, within HGI48_RS18195at 4084.444 kb on + strand, within HGI48_RS18195at 4084.444 kb on + strand, within HGI48_RS18195at 4084.444 kb on + strand, within HGI48_RS18195at 4084.627 kb on + strandat 4084.627 kb on + strandat 4084.657 kb on + strand, within HGI48_RS18195at 4084.657 kb on + strand, within HGI48_RS18195

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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4,082,359 + -1.3
4,082,431 - -0.6
4,082,436 + -0.5
4,082,436 + +0.0
4,082,436 + +1.3
4,082,441 + -0.6
4,082,441 + +0.3
4,082,441 + +1.3
4,082,441 + -0.2
4,082,441 + -0.9
4,082,441 + -0.9
4,082,442 - -0.4
4,082,442 - -0.8
4,082,442 - -0.7
4,082,465 + -1.0
4,082,473 + +0.2
4,084,120 + HGI48_RS18195 0.29 -0.8
4,084,121 - HGI48_RS18195 0.29 -1.6
4,084,209 + HGI48_RS18195 0.38 +0.6
4,084,224 + HGI48_RS18195 0.40 -1.8
4,084,444 + HGI48_RS18195 0.62 -1.3
4,084,444 + HGI48_RS18195 0.62 +0.2
4,084,444 + HGI48_RS18195 0.62 -1.2
4,084,444 + HGI48_RS18195 0.62 -0.7
4,084,627 + -0.8
4,084,627 + -0.3
4,084,657 + HGI48_RS18195 0.83 -1.3
4,084,657 + HGI48_RS18195 0.83 -0.3

Or see this region's nucleotide sequence