Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08010

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,717,208	+		HGI48_RS08005	0.50	-0.3
1,717,209	-		HGI48_RS08005	0.50	+1.4
1,717,209	-		HGI48_RS08005	0.50	+0.4
1,717,438	-		HGI48_RS08005	0.66	-0.9
1,717,490	+		HGI48_RS08005	0.69	+0.7
1,717,699	+		HGI48_RS08005	0.84	-0.6
1,717,830	+				+0.4
1,717,830	+				+0.3
1,717,831	-				+0.1
1,717,831	-				+0.6
1,717,929	+				-0.0
1,717,929	+				-0.3
1,717,929	+				+1.2
1,717,929	+				-0.6
1,717,929	+				-0.2
1,717,929	+				-1.8
1,717,956	+				-0.1
1,717,956	+				+0.1
1,717,956	+				-1.2
1,717,956	+				-1.9
1,717,956	+				+0.6
1,717,956	+				-0.9
1,717,956	+				-0.3
1,717,956	+				+1.4
1,717,957	+				-0.9
1,717,957	-				-0.6
1,717,957	-				+0.4
1,717,957	-				+0.4
1,717,957	-				-0.4
1,717,957	-				-0.0
1,717,957	-				-1.2
1,717,957	-				-0.4
1,717,957	-				-0.4
1,717,967	+				-0.6
1,717,967	+				-0.2
1,717,975	-				+0.2
1,718,037	-				+0.9
1,718,037	-				+0.1
1,718,081	+				-0.0
1,718,164	+				-2.2
1,718,254	+				-0.0
1,718,254	+				-2.3
1,718,255	-				-1.6
1,718,255	-				-0.1
1,718,255	-				-0.4
1,718,329	+		HGI48_RS08010	0.11	-0.9
1,718,330	-		HGI48_RS08010	0.11	-2.4
1,718,345	-		HGI48_RS08010	0.11	-0.8
1,718,345	-		HGI48_RS08010	0.11	-0.3
1,718,374	-		HGI48_RS08010	0.12	-0.8
1,718,410	-		HGI48_RS08010	0.13	-0.6
1,718,410	-		HGI48_RS08010	0.13	-0.0
1,718,410	-		HGI48_RS08010	0.13	-1.2
1,718,410	-				+0.8
1,718,682	+		HGI48_RS08010	0.21	+0.1
1,718,682	+		HGI48_RS08010	0.21	+1.4
1,718,682	+		HGI48_RS08010	0.21	+0.5
1,718,683	-				+0.4
1,718,690	-				+1.4
1,718,690	-		HGI48_RS08010	0.21	+0.7
1,718,690	-				+0.8
1,718,755	+		HGI48_RS08010	0.23	+1.4
1,718,755	+				+0.8
1,718,755	+		HGI48_RS08010	0.23	-0.4
1,718,755	+		HGI48_RS08010	0.23	+0.5
1,718,755	+		HGI48_RS08010	0.23	-0.6
1,718,756	-				+1.4
1,718,778	+		HGI48_RS08010	0.23	-0.3
1,718,778	+		HGI48_RS08010	0.23	-0.8
1,718,778	+		HGI48_RS08010	0.23	+0.4
1,718,779	-		HGI48_RS08010	0.24	-0.6
1,718,934	+		HGI48_RS08010	0.28	+0.2
1,718,934	+				+1.1
1,718,935	-		HGI48_RS08010	0.28	-0.6
1,718,982	+		HGI48_RS08010	0.29	-0.2
1,718,982	+		HGI48_RS08010	0.29	-0.9
1,719,025	+		HGI48_RS08010	0.31	-0.9
1,719,025	+		HGI48_RS08010	0.31	-0.9
1,719,025	+				+0.4
1,719,025	+		HGI48_RS08010	0.31	-0.0
1,719,025	+				-0.2
1,719,026	-		HGI48_RS08010	0.31	-2.6
1,719,094	+		HGI48_RS08010	0.33	+0.4
1,719,094	+		HGI48_RS08010	0.33	+1.4
1,719,094	+				-0.2
1,719,094	+		HGI48_RS08010	0.33	+0.7
1,719,094	+		HGI48_RS08010	0.33	-2.6
1,719,094	+		HGI48_RS08010	0.33	+1.2
1,719,095	-		HGI48_RS08010	0.33	+1.0
1,719,095	-				+1.0
1,719,109	+		HGI48_RS08010	0.33	+0.4
1,719,110	-				+2.3
1,719,207	+		HGI48_RS08010	0.36	-0.9
1,719,207	+				+0.4
1,719,207	+		HGI48_RS08010	0.36	+0.4
1,719,207	+		HGI48_RS08010	0.36	-0.2
1,719,207	+		HGI48_RS08010	0.36	+0.1
1,719,318	+		HGI48_RS08010	0.39	-1.6
1,719,319	-		HGI48_RS08010	0.39	-0.4
1,719,520	+		HGI48_RS08010	0.45	+0.4
1,719,520	+		HGI48_RS08010	0.45	-1.2
1,719,520	+		HGI48_RS08010	0.45	-2.4
1,719,520	+		HGI48_RS08010	0.45	+0.1
1,719,521	-		HGI48_RS08010	0.45	-2.4
1,719,521	-		HGI48_RS08010	0.45	-0.2
1,719,571	-		HGI48_RS08010	0.46	+0.9
1,719,583	+		HGI48_RS08010	0.47	-0.2
1,719,583	+		HGI48_RS08010	0.47	+0.6
1,719,584	-		HGI48_RS08010	0.47	+1.3
1,719,584	-		HGI48_RS08010	0.47	+0.4
1,719,584	-		HGI48_RS08010	0.47	+0.7
1,719,598	+		HGI48_RS08010	0.47	-0.3
1,719,599	-		HGI48_RS08010	0.47	+0.2
1,719,599	-		HGI48_RS08010	0.47	-0.6
1,719,696	+		HGI48_RS08010	0.50	-2.2
1,719,697	-		HGI48_RS08010	0.50	-0.3
1,719,763	-				-0.2
1,719,763	-		HGI48_RS08010	0.52	-0.3
1,719,763	-		HGI48_RS08010	0.52	+0.9
1,719,836	-				+0.8
1,719,883	-		HGI48_RS08010	0.55	+1.0
1,719,961	+		HGI48_RS08010	0.57	+0.2
1,719,962	-		HGI48_RS08010	0.57	-0.2
1,719,962	-		HGI48_RS08010	0.57	-0.6
1,719,974	-		HGI48_RS08010	0.58	+0.5
1,720,037	+				-1.2
1,720,267	+		HGI48_RS08010	0.66	-0.1
1,720,267	+				+0.8
1,720,267	+				-0.2
1,720,267	+		HGI48_RS08010	0.66	-1.2
1,720,267	+		HGI48_RS08010	0.66	+2.2
1,720,268	-				+0.8
1,720,268	-		HGI48_RS08010	0.66	-0.3
1,720,338	+		HGI48_RS08010	0.68	-0.9
1,720,458	+		HGI48_RS08010	0.72	+0.9
1,720,571	-		HGI48_RS08010	0.75	-0.6
1,720,571	-		HGI48_RS08010	0.75	+0.4
1,720,583	+		HGI48_RS08010	0.75	-1.6
1,720,583	+		HGI48_RS08010	0.75	+0.2
1,720,584	-		HGI48_RS08010	0.75	-0.9
1,720,584	-				+1.0
1,720,678	+		HGI48_RS08010	0.78	-0.1
1,720,678	+		HGI48_RS08010	0.78	+1.2
1,720,678	+		HGI48_RS08010	0.78	-0.4
1,720,678	+		HGI48_RS08010	0.78	+0.3
1,720,679	-		HGI48_RS08010	0.78	+0.4
1,720,679	-		HGI48_RS08010	0.78	-0.4
1,720,679	-		HGI48_RS08010	0.78	+0.7
1,720,918	+		HGI48_RS08010	0.85	-0.6
1,720,919	-		HGI48_RS08010	0.85	-0.0
1,720,919	-		HGI48_RS08010	0.85	-1.6
1,720,954	-		HGI48_RS08010	0.86	-1.8
1,721,038	-		HGI48_RS08010	0.88	+0.9
1,721,140	+				-1.2
1,721,325	+				+1.5
1,721,325	+				-0.2
1,721,326	-				+0.6
1,721,326	-				-0.9
1,721,377	+				+0.1
1,721,446	+				-2.6
1,721,447	-				-0.9
1,721,503	-				+0.0
1,721,503	-				-1.9
1,721,571	-				-1.2
1,721,571	-				+0.4
1,721,689	+		HGI48_RS08015	0.13	+0.4
1,721,689	+		HGI48_RS08015	0.13	-1.2
1,721,689	+				-0.2
1,721,689	+		HGI48_RS08015	0.13	-0.3
1,721,689	+				+1.1
1,721,689	+				-0.6
1,721,689	+				-0.2
1,721,690	-		HGI48_RS08015	0.13	-0.3
1,721,690	-		HGI48_RS08015	0.13	-0.1
1,721,690	-		HGI48_RS08015	0.13	+0.2
1,721,869	+		HGI48_RS08015	0.26	-1.4
1,721,870	-		HGI48_RS08015	0.26	-1.0
1,722,005	-		HGI48_RS08015	0.35	-2.8
1,722,005	-		HGI48_RS08015	0.35	+1.4
1,722,005	-		HGI48_RS08015	0.35	-0.9
1,722,076	-		HGI48_RS08015	0.40	+1.0
1,722,174	+		HGI48_RS08015	0.47	+0.1
1,722,174	+		HGI48_RS08015	0.47	-0.1
1,722,175	-		HGI48_RS08015	0.47	+0.4
1,722,216	-				+1.4
1,722,320	-		HGI48_RS08015	0.57	-0.0
1,722,371	-		HGI48_RS08015	0.61	-0.6
1,722,372	+		HGI48_RS08015	0.61	+0.4
1,722,372	+		HGI48_RS08015	0.61	-0.6
1,722,372	+		HGI48_RS08015	0.61	-0.5
1,722,372	+		HGI48_RS08015	0.61	-0.9
1,722,373	-		HGI48_RS08015	0.61	-1.6
1,722,373	-		HGI48_RS08015	0.61	+0.6