Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07815

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,672,996	-		HGI48_RS07810	0.88	-1.3
1,672,996	-		HGI48_RS07810	0.88	-1.6
1,673,019	+				-1.6
1,673,020	-				-0.9
1,673,020	-				+0.2
1,673,033	-				-1.4
1,673,258	+				-0.9
1,673,270	+				-0.2
1,673,445	-				-0.0
1,673,448	+				+1.9
1,673,515	+				-0.3
1,673,536	-				-0.2
1,673,540	-				-0.8
1,673,540	-				+0.2
1,673,560	+				-0.4
1,673,673	+				+0.9
1,673,673	+				+0.4
1,673,674	-				+0.2
1,673,689	+				+0.4
1,673,690	-				-0.7
1,673,734	+				+0.1
1,673,734	+				-0.4
1,673,735	-				-0.7
1,673,735	-				-1.6
1,673,754	+				-0.2
1,673,754	+				+1.4
1,673,754	+				-1.2
1,673,755	-				+0.1
1,673,755	-				-0.3
1,673,756	+				-0.1
1,673,756	+				-2.2
1,673,756	+				+0.7
1,673,757	-				-1.2
1,673,757	-				+0.2
1,673,764	-				+1.2
1,673,764	-				+0.2
1,673,764	-				-0.2
1,673,770	+				+0.3
1,673,771	-				-0.3
1,673,771	-				-0.5
1,673,795	+				-0.6
1,673,852	-				+0.2
1,673,855	+				-1.9
1,673,855	+				-0.6
1,673,856	-				-0.3
1,673,863	+				+1.2
1,673,863	+				-0.2
1,674,095	+		HGI48_RS07815	0.21	+1.4
1,674,113	+		HGI48_RS07815	0.23	-2.4
1,674,113	+		HGI48_RS07815	0.23	-1.6
1,674,114	-		HGI48_RS07815	0.23	-0.3
1,674,142	+		HGI48_RS07815	0.26	-0.8
1,674,189	+		HGI48_RS07815	0.31	+0.3
1,674,190	-		HGI48_RS07815	0.31	-0.6
1,674,264	-				+1.0
1,674,287	+		HGI48_RS07815	0.41	-0.2
1,674,287	+		HGI48_RS07815	0.41	-0.2
1,674,288	-		HGI48_RS07815	0.41	-0.2
1,674,288	-		HGI48_RS07815	0.41	-0.2
1,674,291	+		HGI48_RS07815	0.41	-0.6
1,674,291	+		HGI48_RS07815	0.41	-1.6
1,674,291	+		HGI48_RS07815	0.41	-1.9
1,674,291	+		HGI48_RS07815	0.41	+0.1
1,674,291	+		HGI48_RS07815	0.41	-1.0
1,674,291	+		HGI48_RS07815	0.41	-1.9
1,674,291	+		HGI48_RS07815	0.41	-0.5
1,674,291	+		HGI48_RS07815	0.41	-1.2
1,674,291	+		HGI48_RS07815	0.41	+0.9
1,674,291	+		HGI48_RS07815	0.41	-0.7
1,674,291	+		HGI48_RS07815	0.41	-1.2
1,674,291	+				+1.4
1,674,291	+		HGI48_RS07815	0.41	-1.6
1,674,292	-		HGI48_RS07815	0.41	+0.1
1,674,292	-		HGI48_RS07815	0.41	-1.7
1,674,292	-		HGI48_RS07815	0.41	+0.2
1,674,292	-		HGI48_RS07815	0.41	+0.9
1,674,292	-		HGI48_RS07815	0.41	+1.3
1,674,292	-		HGI48_RS07815	0.41	+0.9
1,674,292	-		HGI48_RS07815	0.41	+0.9
1,674,292	-		HGI48_RS07815	0.41	+0.4
1,674,292	-		HGI48_RS07815	0.41	-2.7
1,674,292	-		HGI48_RS07815	0.41	-0.6
1,674,292	-		HGI48_RS07815	0.41	-0.9
1,674,292	-		HGI48_RS07815	0.41	-1.6
1,674,293	+		HGI48_RS07815	0.41	-0.7
1,674,293	+		HGI48_RS07815	0.41	+0.2
1,674,294	-		HGI48_RS07815	0.41	-0.7
1,674,302	+		HGI48_RS07815	0.42	-1.3
1,674,302	+		HGI48_RS07815	0.42	-1.1
1,674,401	+		HGI48_RS07815	0.52	-1.3
1,674,402	-		HGI48_RS07815	0.52	+0.9
1,674,518	+		HGI48_RS07815	0.64	-2.9
1,674,518	+		HGI48_RS07815	0.64	-0.6
1,674,519	-		HGI48_RS07815	0.64	+0.6
1,674,519	-		HGI48_RS07815	0.64	+0.7
1,674,519	-		HGI48_RS07815	0.64	+0.7
1,674,525	+		HGI48_RS07815	0.65	-2.9
1,674,526	-		HGI48_RS07815	0.65	-0.2
1,674,536	+		HGI48_RS07815	0.66	-1.9
1,674,628	+		HGI48_RS07815	0.76	+0.1
1,674,665	+		HGI48_RS07815	0.79	-0.2
1,674,666	-		HGI48_RS07815	0.79	+0.4
1,674,666	-		HGI48_RS07815	0.79	+1.1
1,674,681	-		HGI48_RS07815	0.81	-0.8
1,674,701	+		HGI48_RS07815	0.83	-1.0
1,674,702	-		HGI48_RS07815	0.83	+1.0
1,674,717	-		HGI48_RS07815	0.85	+0.2
1,674,760	+		HGI48_RS07815	0.89	+0.4
1,674,760	+		HGI48_RS07815	0.89	-0.3
1,674,760	+				+1.0
1,674,760	+		HGI48_RS07815	0.89	-0.6
1,674,760	+				+0.8
1,674,760	+		HGI48_RS07815	0.89	-1.5
1,674,760	+		HGI48_RS07815	0.89	-0.3
1,674,760	+		HGI48_RS07815	0.89	+0.3
1,674,761	-		HGI48_RS07815	0.89	-1.3
1,674,761	-		HGI48_RS07815	0.89	-0.8
1,674,761	-		HGI48_RS07815	0.89	+0.0
1,674,761	-		HGI48_RS07815	0.89	-0.5
1,674,761	-		HGI48_RS07815	0.89	-0.9
1,674,764	+		HGI48_RS07815	0.89	-0.4
1,674,764	+		HGI48_RS07815	0.89	-2.2
1,674,764	+		HGI48_RS07815	0.89	-0.3
1,674,764	+				-0.2
1,674,764	+		HGI48_RS07815	0.89	-1.6
1,674,764	+		HGI48_RS07815	0.89	+0.3
1,674,764	+		HGI48_RS07815	0.89	-2.4
1,674,765	-		HGI48_RS07815	0.90	+0.2
1,674,765	-		HGI48_RS07815	0.90	-0.7
1,674,765	-		HGI48_RS07815	0.90	+0.1
1,674,765	-		HGI48_RS07815	0.90	+1.3
1,674,783	+				-0.9
1,674,783	+				-1.6
1,674,783	+				+1.1
1,674,784	-				-1.2
1,674,784	-				-1.6
1,674,787	+				+1.7
1,674,787	+				-0.2
1,674,865	-				-1.2
1,674,869	+				-0.4
1,674,869	+				-0.3
1,674,870	-				+0.2
1,674,870	-				+0.9
1,674,870	-				-0.7
1,674,870	-				+0.9
1,674,870	-				+0.8
1,674,870	-				-0.3
1,674,870	-				-0.6
1,674,993	+		HGI48_RS07820	0.48	+0.2
1,674,993	+		HGI48_RS07820	0.48	+0.1
1,674,993	+		HGI48_RS07820	0.48	-1.4
1,674,994	-		HGI48_RS07820	0.48	+1.1
1,674,994	-		HGI48_RS07820	0.48	+0.0
1,674,994	-		HGI48_RS07820	0.48	+0.5
1,674,994	-				+1.2
1,675,029	+		HGI48_RS07820	0.62	-0.2
1,675,198	+				+0.4
1,675,199	-				+0.2
1,675,199	-				+1.4
1,675,199	-				+0.4
1,675,199	-				+1.1
1,675,202	+				+0.2
1,675,208	+				-0.2
1,675,213	+				+0.1
1,675,213	+				+0.4
1,675,220	-				-1.6
1,675,318	-				-0.6
1,675,322	-				+1.5
1,675,322	-				-0.5
1,675,438	+				-0.6
1,675,438	+				+0.3
1,675,439	-				-0.1
1,675,468	+				-1.6
1,675,469	-				+2.2
1,675,561	+		HGI48_RS07825	0.14	+0.2
1,675,561	+		HGI48_RS07825	0.14	-0.2
1,675,561	+		HGI48_RS07825	0.14	-0.4
1,675,706	-		HGI48_RS07825	0.23	+0.7
1,675,706	-		HGI48_RS07825	0.23	+1.2
1,675,711	+		HGI48_RS07825	0.23	-0.0
1,675,711	+		HGI48_RS07825	0.23	-1.0
1,675,711	+		HGI48_RS07825	0.23	+0.4
1,675,711	+		HGI48_RS07825	0.23	+0.4
1,675,712	-		HGI48_RS07825	0.24	-1.6
1,675,712	-		HGI48_RS07825	0.24	-1.4
1,675,712	-		HGI48_RS07825	0.24	+1.0
1,675,712	-				+0.8
1,675,712	-		HGI48_RS07825	0.24	+0.8
1,675,712	-		HGI48_RS07825	0.24	-1.3
1,675,715	+		HGI48_RS07825	0.24	-0.3
1,675,715	+		HGI48_RS07825	0.24	-0.1
1,675,715	+		HGI48_RS07825	0.24	-1.5
1,675,715	+				+2.7
1,675,715	+		HGI48_RS07825	0.24	+1.4
1,675,716	-				+1.7
1,675,716	-		HGI48_RS07825	0.24	-0.2
1,675,716	-		HGI48_RS07825	0.24	+0.7
1,675,716	-		HGI48_RS07825	0.24	-1.4
1,675,727	+				+3.0
1,675,727	+				+0.8
1,675,728	-		HGI48_RS07825	0.25	-0.1
1,675,739	+		HGI48_RS07825	0.25	+1.2
1,675,740	-		HGI48_RS07825	0.25	+0.4
1,675,740	-		HGI48_RS07825	0.25	-0.8
1,675,740	-		HGI48_RS07825	0.25	+1.4
1,675,740	-		HGI48_RS07825	0.25	-0.1
1,675,740	-		HGI48_RS07825	0.25	+0.6
1,675,780	+		HGI48_RS07825	0.28	-1.4