Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04240 and HGI48_RS04245 are separated by 36 nucleotides HGI48_RS04245 and HGI48_RS04250 are separated by 362 nucleotides HGI48_RS04250 and HGI48_RS04255 are separated by 340 nucleotides HGI48_RS04255 and HGI48_RS04260 overlap by 4 nucleotides HGI48_RS04260 and HGI48_RS04265 overlap by 11 nucleotides
HGI48_RS04240: HGI48_RS04240 - hypothetical protein, at 893,263 to 893,640
_RS04240
HGI48_RS04245: HGI48_RS04245 - DUF4755 domain-containing protein, at 893,677 to 894,171
_RS04245
HGI48_RS04250: HGI48_RS04250 - MobA/MobL family protein, at 894,534 to 895,835
_RS04250
HGI48_RS04255: HGI48_RS04255 - hypothetical protein, at 896,176 to 896,361
_RS04255
HGI48_RS04260: HGI48_RS04260 - hypothetical protein, at 896,358 to 896,693
_RS04260
HGI48_RS04265: HGI48_RS04265 - hypothetical protein, at 896,683 to 897,033
_RS04265
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1
2 at 893.892 kb on + strand, within HGI48_RS04245 at 893.983 kb on + strand, within HGI48_RS04245 at 893.997 kb on + strand, within HGI48_RS04245 at 894.052 kb on + strand, within HGI48_RS04245 at 894.101 kb on + strand, within HGI48_RS04245 at 894.208 kb on + strand at 894.220 kb on + strand at 894.221 kb on - strand at 894.221 kb on - strand at 894.348 kb on - strand at 894.432 kb on - strand at 894.535 kb on + strand at 894.568 kb on + strand at 894.569 kb on - strand at 894.569 kb on - strand at 894.588 kb on - strand at 894.636 kb on - strand at 894.778 kb on - strand, within HGI48_RS04250 at 894.784 kb on - strand, within HGI48_RS04250 at 894.998 kb on + strand, within HGI48_RS04250 at 894.998 kb on + strand, within HGI48_RS04250 at 894.999 kb on - strand at 894.999 kb on - strand, within HGI48_RS04250 at 895.052 kb on + strand, within HGI48_RS04250 at 895.052 kb on + strand, within HGI48_RS04250 at 895.053 kb on - strand at 895.053 kb on - strand, within HGI48_RS04250 at 895.053 kb on - strand at 895.076 kb on + strand, within HGI48_RS04250 at 895.076 kb on + strand, within HGI48_RS04250 at 895.077 kb on - strand, within HGI48_RS04250 at 895.077 kb on - strand, within HGI48_RS04250 at 895.098 kb on + strand, within HGI48_RS04250 at 895.098 kb on + strand, within HGI48_RS04250 at 895.099 kb on - strand, within HGI48_RS04250 at 895.099 kb on - strand, within HGI48_RS04250 at 895.166 kb on + strand, within HGI48_RS04250 at 895.182 kb on + strand, within HGI48_RS04250 at 895.233 kb on - strand, within HGI48_RS04250 at 895.347 kb on + strand, within HGI48_RS04250 at 895.347 kb on + strand, within HGI48_RS04250 at 895.418 kb on + strand, within HGI48_RS04250 at 895.429 kb on - strand, within HGI48_RS04250 at 895.429 kb on - strand, within HGI48_RS04250 at 895.470 kb on + strand, within HGI48_RS04250 at 895.471 kb on - strand, within HGI48_RS04250 at 895.472 kb on + strand at 895.568 kb on + strand, within HGI48_RS04250 at 895.743 kb on + strand at 895.781 kb on + strand at 895.781 kb on + strand at 895.784 kb on + strand at 895.827 kb on + strand at 896.050 kb on + strand at 896.267 kb on + strand, within HGI48_RS04255 at 896.271 kb on + strand, within HGI48_RS04255 at 896.323 kb on - strand, within HGI48_RS04255 at 896.389 kb on - strand at 896.523 kb on - strand, within HGI48_RS04260
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 893,892 + HGI48_RS04245 0.43 -1.3 893,983 + HGI48_RS04245 0.62 -0.2 893,997 + HGI48_RS04245 0.65 -0.9 894,052 + HGI48_RS04245 0.76 -1.4 894,101 + HGI48_RS04245 0.86 -1.1 894,208 + -0.6 894,220 + +0.1 894,221 - -0.8 894,221 - -1.5 894,348 - +1.1 894,432 - -2.1 894,535 + -0.2 894,568 + -0.9 894,569 - +0.8 894,569 - +0.1 894,588 - -1.1 894,636 - +0.7 894,778 - HGI48_RS04250 0.19 -0.7 894,784 - HGI48_RS04250 0.19 +1.4 894,998 + HGI48_RS04250 0.36 +0.5 894,998 + HGI48_RS04250 0.36 -0.2 894,999 - +0.7 894,999 - HGI48_RS04250 0.36 +2.7 895,052 + HGI48_RS04250 0.40 -0.4 895,052 + HGI48_RS04250 0.40 -0.7 895,053 - +1.2 895,053 - HGI48_RS04250 0.40 +0.2 895,053 - +1.4 895,076 + HGI48_RS04250 0.42 -0.0 895,076 + HGI48_RS04250 0.42 +0.4 895,077 - HGI48_RS04250 0.42 +1.5 895,077 - HGI48_RS04250 0.42 -2.2 895,098 + HGI48_RS04250 0.43 +0.1 895,098 + HGI48_RS04250 0.43 -1.9 895,099 - HGI48_RS04250 0.43 -1.3 895,099 - HGI48_RS04250 0.43 -1.0 895,166 + HGI48_RS04250 0.49 -0.1 895,182 + HGI48_RS04250 0.50 +1.4 895,233 - HGI48_RS04250 0.54 -1.7 895,347 + HGI48_RS04250 0.62 -0.9 895,347 + HGI48_RS04250 0.62 -2.2 895,418 + HGI48_RS04250 0.68 -1.2 895,429 - HGI48_RS04250 0.69 -1.3 895,429 - HGI48_RS04250 0.69 -0.9 895,470 + HGI48_RS04250 0.72 -0.2 895,471 - HGI48_RS04250 0.72 -0.6 895,472 + -0.9 895,568 + HGI48_RS04250 0.79 -0.3 895,743 + -0.8 895,781 + +0.3 895,781 + -2.2 895,784 + -0.2 895,827 + -0.7 896,050 + +1.2 896,267 + HGI48_RS04255 0.49 +0.3 896,271 + HGI48_RS04255 0.51 +0.4 896,323 - HGI48_RS04255 0.79 -0.6 896,389 - +2.0 896,523 - HGI48_RS04260 0.49 -0.7
Or see this region's nucleotide sequence