Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00930

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00920 and HGI48_RS00925 are separated by 113 nucleotidesHGI48_RS00925 and HGI48_RS00930 are separated by 2 nucleotidesHGI48_RS00930 and HGI48_RS00935 are separated by 31 nucleotidesHGI48_RS00935 and HGI48_RS00940 are separated by 212 nucleotides HGI48_RS00920: HGI48_RS00920 - Sec-independent protein translocase subunit TatC, at 210,030 to 210,797 _RS00920 HGI48_RS00925: HGI48_RS00925 - 3'-5' ssDNA/RNA exonuclease TatD, at 210,911 to 211,705 _RS00925 HGI48_RS00930: HGI48_RS00930 - porphobilinogen synthase, at 211,708 to 212,730 _RS00930 HGI48_RS00935: HGI48_RS00935 - transcription/translation regulatory transformer protein RfaH, at 212,762 to 213,250 _RS00935 HGI48_RS00940: HGI48_RS00940 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 213,463 to 214,950 _RS00940 Position (kb) 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2at 210.735 kb on + strandat 210.736 kb on - strandat 210.829 kb on + strandat 210.869 kb on + strandat 210.969 kb on + strandat 210.970 kb on - strandat 210.970 kb on - strandat 211.074 kb on - strandat 211.310 kb on - strand, within HGI48_RS00925at 211.318 kb on + strand, within HGI48_RS00925at 211.319 kb on - strandat 211.319 kb on - strand, within HGI48_RS00925at 211.346 kb on - strand, within HGI48_RS00925at 211.489 kb on + strand, within HGI48_RS00925at 211.548 kb on + strand, within HGI48_RS00925at 211.548 kb on + strand, within HGI48_RS00925at 211.548 kb on + strand, within HGI48_RS00925at 211.549 kb on - strand, within HGI48_RS00925at 211.549 kb on - strand, within HGI48_RS00925at 211.549 kb on - strand, within HGI48_RS00925at 211.549 kb on - strand, within HGI48_RS00925at 211.549 kb on - strand, within HGI48_RS00925at 211.555 kb on + strand, within HGI48_RS00925at 211.555 kb on + strand, within HGI48_RS00925at 211.555 kb on + strand, within HGI48_RS00925at 211.556 kb on - strand, within HGI48_RS00925at 211.597 kb on + strand, within HGI48_RS00925at 211.598 kb on - strand, within HGI48_RS00925at 211.703 kb on + strandat 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strandat 212.862 kb on + strandat 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.862 kb on + strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strandat 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.863 kb on - strand, within HGI48_RS00935at 212.866 kb on + strand, within HGI48_RS00935at 212.866 kb on + strand, within HGI48_RS00935at 212.867 kb on - strand, within HGI48_RS00935at 212.867 kb on - strand, within HGI48_RS00935at 212.904 kb on - strand, within HGI48_RS00935at 212.904 kb on - strand, within HGI48_RS00935at 212.939 kb on - strand, within HGI48_RS00935at 212.939 kb on - strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.059 kb on + strand, within HGI48_RS00935at 213.060 kb on - strand, within HGI48_RS00935at 213.060 kb on - strand, within HGI48_RS00935at 213.060 kb on - strand, within HGI48_RS00935at 213.060 kb on - strandat 213.060 kb on - strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.090 kb on + strand, within HGI48_RS00935at 213.091 kb on - strand, within HGI48_RS00935at 213.091 kb on - strand, within HGI48_RS00935at 213.228 kb on + strandat 213.228 kb on + strandat 213.228 kb on + strandat 213.229 kb on - strandat 213.229 kb on - strandat 213.229 kb on - strandat 213.233 kb on + strandat 213.234 kb on - strandat 213.387 kb on + strandat 213.388 kb on - strandat 213.425 kb on + strandat 213.425 kb on + strandat 213.425 kb on + strandat 213.425 kb on + strandat 213.425 kb on + strandat 213.426 kb on - strandat 213.426 kb on - strandat 213.426 kb on - strandat 213.427 kb on + strandat 213.427 kb on + strandat 213.427 kb on + strandat 213.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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210,735 + +0.1
210,736 - +0.1
210,829 + -1.1
210,869 + -0.7
210,969 + -0.4
210,970 - -2.2
210,970 - -2.3
211,074 - -0.1
211,310 - HGI48_RS00925 0.50 -0.1
211,318 + HGI48_RS00925 0.51 +0.4
211,319 - +0.3
211,319 - HGI48_RS00925 0.51 -0.4
211,346 - HGI48_RS00925 0.55 -0.6
211,489 + HGI48_RS00925 0.73 -1.7
211,548 + HGI48_RS00925 0.80 -1.1
211,548 + HGI48_RS00925 0.80 -0.1
211,548 + HGI48_RS00925 0.80 +0.9
211,549 - HGI48_RS00925 0.80 -0.6
211,549 - HGI48_RS00925 0.80 +0.4
211,549 - HGI48_RS00925 0.80 -0.6
211,549 - HGI48_RS00925 0.80 -1.7
211,549 - HGI48_RS00925 0.80 -1.7
211,555 + HGI48_RS00925 0.81 +0.7
211,555 + HGI48_RS00925 0.81 +0.7
211,555 + HGI48_RS00925 0.81 +0.5
211,556 - HGI48_RS00925 0.81 -0.5
211,597 + HGI48_RS00925 0.86 -1.1
211,598 - HGI48_RS00925 0.86 -0.7
211,703 + -2.3
212,862 + HGI48_RS00935 0.20 -0.1
212,862 + HGI48_RS00935 0.20 -0.7
212,862 + HGI48_RS00935 0.20 -1.1
212,862 + HGI48_RS00935 0.20 -1.7
212,862 + HGI48_RS00935 0.20 -0.4
212,862 + HGI48_RS00935 0.20 -1.7
212,862 + HGI48_RS00935 0.20 +1.0
212,862 + HGI48_RS00935 0.20 +0.9
212,862 + HGI48_RS00935 0.20 -1.8
212,862 + HGI48_RS00935 0.20 +2.2
212,862 + HGI48_RS00935 0.20 -1.0
212,862 + -0.1
212,862 + -0.7
212,862 + HGI48_RS00935 0.20 -0.3
212,862 + HGI48_RS00935 0.20 -0.1
212,862 + HGI48_RS00935 0.20 +0.1
212,863 - HGI48_RS00935 0.21 +0.4
212,863 - +1.9
212,863 - HGI48_RS00935 0.21 -1.9
212,863 - HGI48_RS00935 0.21 +1.5
212,863 - HGI48_RS00935 0.21 +0.5
212,863 - HGI48_RS00935 0.21 -0.3
212,863 - HGI48_RS00935 0.21 -0.0
212,863 - HGI48_RS00935 0.21 -0.1
212,863 - HGI48_RS00935 0.21 +0.1
212,866 + HGI48_RS00935 0.21 -0.3
212,866 + HGI48_RS00935 0.21 +0.9
212,867 - HGI48_RS00935 0.21 +0.1
212,867 - HGI48_RS00935 0.21 -0.7
212,904 - HGI48_RS00935 0.29 +0.9
212,904 - HGI48_RS00935 0.29 -1.7
212,939 - HGI48_RS00935 0.36 -1.1
212,939 - HGI48_RS00935 0.36 -1.1
213,059 + HGI48_RS00935 0.61 -1.5
213,059 + HGI48_RS00935 0.61 -1.3
213,059 + HGI48_RS00935 0.61 -1.2
213,059 + HGI48_RS00935 0.61 -1.1
213,059 + HGI48_RS00935 0.61 -0.6
213,059 + HGI48_RS00935 0.61 +1.7
213,059 + HGI48_RS00935 0.61 -1.6
213,059 + HGI48_RS00935 0.61 +0.0
213,059 + HGI48_RS00935 0.61 +0.3
213,059 + HGI48_RS00935 0.61 -1.1
213,060 - HGI48_RS00935 0.61 -0.7
213,060 - HGI48_RS00935 0.61 +2.3
213,060 - HGI48_RS00935 0.61 -1.2
213,060 - -0.7
213,060 - HGI48_RS00935 0.61 -0.9
213,090 + HGI48_RS00935 0.67 -0.9
213,090 + HGI48_RS00935 0.67 +1.8
213,090 + HGI48_RS00935 0.67 -0.5
213,090 + HGI48_RS00935 0.67 -0.6
213,090 + HGI48_RS00935 0.67 +0.2
213,090 + HGI48_RS00935 0.67 +0.5
213,090 + HGI48_RS00935 0.67 +0.6
213,091 - HGI48_RS00935 0.67 -0.9
213,091 - HGI48_RS00935 0.67 -1.7
213,228 + +0.6
213,228 + -0.3
213,228 + -0.5
213,229 - -1.0
213,229 - -0.5
213,229 - -0.1
213,233 + +2.2
213,234 - -0.4
213,387 + -0.1
213,388 - +1.7
213,425 + +1.3
213,425 + -0.5
213,425 + -0.5
213,425 + +0.3
213,425 + +0.5
213,426 - -0.7
213,426 - +1.7
213,426 - -1.5
213,427 + +0.7
213,427 + -0.1
213,427 + -0.8
213,430 + -0.7

Or see this region's nucleotide sequence