Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20890

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,666,040	+		HGI48_RS20880	0.80	-0.4
4,666,060	+		HGI48_RS20880	0.88	-0.4
4,666,061	-		HGI48_RS20880	0.89	+0.5
4,666,061	-		HGI48_RS20880	0.89	-1.6
4,666,095	+				+0.1
4,666,099	-				+0.7
4,666,102	-				-0.3
4,666,118	+				-1.4
4,666,118	+				+0.4
4,666,122	-				-1.6
4,666,235	-		HGI48_RS20885	0.12	+1.5
4,666,239	-		HGI48_RS20885	0.12	+1.2
4,666,309	+		HGI48_RS20885	0.21	-0.3
4,666,375	-		HGI48_RS20885	0.29	+0.2
4,666,387	-		HGI48_RS20885	0.30	-0.6
4,666,392	-		HGI48_RS20885	0.31	-0.0
4,666,491	-		HGI48_RS20885	0.43	-1.3
4,666,509	-		HGI48_RS20885	0.45	-0.4
4,666,537	-		HGI48_RS20885	0.48	-0.0
4,666,590	+		HGI48_RS20885	0.55	+1.0
4,666,636	+		HGI48_RS20885	0.60	+0.6
4,666,637	-		HGI48_RS20885	0.60	+0.5
4,666,675	+		HGI48_RS20885	0.65	-0.2
4,666,676	-		HGI48_RS20885	0.65	+1.1
4,666,731	+		HGI48_RS20885	0.72	-0.3
4,666,738	-		HGI48_RS20885	0.73	-1.6
4,666,763	+		HGI48_RS20885	0.76	+0.2
4,666,764	-		HGI48_RS20885	0.76	-0.6
4,666,764	-		HGI48_RS20885	0.76	-0.0
4,666,764	-		HGI48_RS20885	0.76	+0.5
4,666,764	-		HGI48_RS20885	0.76	-0.4
4,666,793	+		HGI48_RS20885	0.79	+0.7
4,666,793	+				+0.4
4,666,806	+		HGI48_RS20885	0.81	-1.5
4,666,806	+		HGI48_RS20885	0.81	+1.1
4,666,807	-		HGI48_RS20885	0.81	-0.0
4,666,876	+		HGI48_RS20885	0.89	-0.2
4,666,880	+				+0.4
4,666,880	+				+1.0
4,666,881	-				-1.0
4,666,968	-				-0.0
4,666,973	-				-1.4
4,667,056	+				+2.0
4,667,080	-		HGI48_RS20890	0.12	-1.7
4,667,106	+		HGI48_RS20890	0.16	-1.1
4,667,119	+		HGI48_RS20890	0.18	-2.2
4,667,161	-		HGI48_RS20890	0.26	-0.3
4,667,319	+		HGI48_RS20890	0.52	+1.0
4,667,320	-		HGI48_RS20890	0.52	-1.4
4,667,470	-		HGI48_RS20890	0.77	+0.1
4,667,479	+		HGI48_RS20890	0.79	+0.1
4,667,480	-		HGI48_RS20890	0.79	-1.7
4,667,657	+				-0.4
4,667,678	-				+1.0
4,667,747	+				+0.7
4,667,770	-				-0.0
4,667,816	+				-0.4
4,667,841	+				-1.0
4,667,858	+				-2.5
4,667,858	+				+0.6
4,667,858	+				-1.6
4,667,858	+				-1.0
4,667,858	+				-0.1
4,667,858	+				+0.5
4,667,858	+				+1.5
4,667,859	-				+0.4
4,667,859	-				-0.5
4,667,859	-				-0.5
4,667,859	-				-0.0
4,667,859	-				-0.2
4,667,859	-				+0.7
4,667,859	-				+1.0
4,667,860	+				+0.3
4,667,911	+				+1.8
4,667,911	+				-0.9
4,667,912	-				-0.4
4,667,912	-				+0.2
4,667,912	-				+0.1
4,667,924	+				-1.4
4,667,924	+				+0.1
4,667,925	-				+1.5
4,667,925	-				-1.6
4,667,925	-				+1.7
4,667,933	+				-0.0
4,667,934	-				-2.3
4,667,934	-				-0.0
4,667,934	-				-0.0
4,668,038	-		HGI48_RS20895	0.46	+0.2
4,668,061	+		HGI48_RS20895	0.55	-0.0
4,668,092	+		HGI48_RS20895	0.66	+0.1
4,668,092	+		HGI48_RS20895	0.66	-0.2
4,668,092	+				+1.5
4,668,092	+		HGI48_RS20895	0.66	+0.4
4,668,092	+		HGI48_RS20895	0.66	-0.5
4,668,092	+		HGI48_RS20895	0.66	-1.4
4,668,093	-		HGI48_RS20895	0.66	+1.0
4,668,093	-		HGI48_RS20895	0.66	-1.5
4,668,093	-		HGI48_RS20895	0.66	-1.0
4,668,143	+		HGI48_RS20895	0.85	-1.6
4,668,144	-		HGI48_RS20895	0.85	+1.3
4,668,144	-		HGI48_RS20895	0.85	-0.6
4,668,145	+		HGI48_RS20895	0.85	-1.5
4,668,145	+		HGI48_RS20895	0.85	+1.0
4,668,145	+		HGI48_RS20895	0.85	+0.3
4,668,145	+		HGI48_RS20895	0.85	-0.2
4,668,145	+		HGI48_RS20895	0.85	+1.0
4,668,146	-		HGI48_RS20895	0.86	+0.8
4,668,146	-		HGI48_RS20895	0.86	+1.2
4,668,146	-		HGI48_RS20895	0.86	+0.4
4,668,146	-		HGI48_RS20895	0.86	+0.1
4,668,182	+				+0.4
4,668,202	+				-0.2
4,668,202	+				+0.4
4,668,203	-				-1.6
4,668,203	-				-1.0
4,668,268	-				-0.4
4,668,268	-				-1.2
4,668,268	-				+1.0
4,668,277	-				+1.0
4,668,288	+				-0.9
4,668,288	+				-0.4
4,668,288	+				-1.0
4,668,289	-				-0.6
4,668,302	+				+0.5
4,668,302	+				-0.3
4,668,302	+				-0.9
4,668,302	+				+0.2
4,668,302	+				-0.1
4,668,303	-				+0.4
4,668,303	-				+2.7
4,668,303	-				+0.1
4,668,303	-				-0.0
4,668,303	-				-0.6
4,668,303	-				-0.0
4,668,303	-				-1.0
4,668,303	-				+1.8
4,668,303	-				-0.4
4,668,303	-				+0.4
4,668,303	-				+1.2
4,668,380	+		HGI48_RS20900	0.17	+0.4
4,668,380	+		HGI48_RS20900	0.17	+0.1
4,668,380	+		HGI48_RS20900	0.17	-0.1
4,668,381	-		HGI48_RS20900	0.17	-1.1
4,668,381	-				-0.0
4,668,381	-		HGI48_RS20900	0.17	-0.0
4,668,381	-				-0.0
4,668,464	+		HGI48_RS20900	0.37	+1.0
4,668,465	-		HGI48_RS20900	0.37	+0.2
4,668,465	-		HGI48_RS20900	0.37	-2.5
4,668,465	-		HGI48_RS20900	0.37	+1.0
4,668,476	+		HGI48_RS20900	0.40	-2.4
4,668,477	-		HGI48_RS20900	0.40	-0.4
4,668,477	-		HGI48_RS20900	0.40	+0.7
4,668,477	-		HGI48_RS20900	0.40	-0.2
4,668,502	+		HGI48_RS20900	0.46	-0.9
4,668,502	+		HGI48_RS20900	0.46	-0.6
4,668,502	+		HGI48_RS20900	0.46	+0.8
4,668,503	-		HGI48_RS20900	0.46	-2.4
4,668,503	-		HGI48_RS20900	0.46	-0.0
4,668,503	-		HGI48_RS20900	0.46	-0.0
4,668,503	-		HGI48_RS20900	0.46	+1.7
4,668,503	-		HGI48_RS20900	0.46	-0.1
4,668,535	+		HGI48_RS20900	0.54	-0.9
4,668,536	-		HGI48_RS20900	0.54	-0.0
4,668,577	-		HGI48_RS20900	0.64	-0.0
4,668,577	-		HGI48_RS20900	0.64	-2.5
4,668,586	+		HGI48_RS20900	0.66	+0.4