Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19710

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,397,854	-		HGI48_RS19705	0.15	-0.4
4,397,896	+		HGI48_RS19705	0.20	-1.0
4,397,897	-		HGI48_RS19705	0.20	-0.4
4,397,911	+		HGI48_RS19705	0.22	-0.1
4,397,912	-		HGI48_RS19705	0.22	-1.1
4,397,912	-		HGI48_RS19705	0.22	-1.7
4,397,919	+		HGI48_RS19705	0.23	-0.3
4,397,920	-		HGI48_RS19705	0.23	-1.4
4,397,920	-				+1.9
4,397,920	-		HGI48_RS19705	0.23	-1.7
4,397,920	-		HGI48_RS19705	0.23	+0.3
4,397,927	+		HGI48_RS19705	0.23	-1.1
4,397,927	+		HGI48_RS19705	0.23	-2.1
4,397,928	-		HGI48_RS19705	0.23	-1.1
4,397,971	+		HGI48_RS19705	0.28	+0.4
4,397,972	-		HGI48_RS19705	0.28	-0.4
4,397,984	-		HGI48_RS19705	0.30	+0.4
4,397,984	-		HGI48_RS19705	0.30	-1.4
4,398,009	+				-0.7
4,398,009	+		HGI48_RS19705	0.32	+0.1
4,398,010	-		HGI48_RS19705	0.32	+0.3
4,398,010	-		HGI48_RS19705	0.32	+0.4
4,398,010	-		HGI48_RS19705	0.32	+0.5
4,398,154	+		HGI48_RS19705	0.48	-0.3
4,398,154	+		HGI48_RS19705	0.48	-1.9
4,398,154	+		HGI48_RS19705	0.48	-2.1
4,398,155	-		HGI48_RS19705	0.48	-1.4
4,398,155	-		HGI48_RS19705	0.48	-0.1
4,398,155	-		HGI48_RS19705	0.48	-0.3
4,398,155	-				+2.5
4,398,155	-		HGI48_RS19705	0.48	-0.1
4,398,157	+		HGI48_RS19705	0.48	+0.5
4,398,158	-		HGI48_RS19705	0.48	+1.2
4,398,158	-		HGI48_RS19705	0.48	-0.6
4,398,248	-		HGI48_RS19705	0.58	-1.1
4,398,248	-		HGI48_RS19705	0.58	+0.7
4,398,332	-		HGI48_RS19705	0.67	-1.9
4,398,332	-		HGI48_RS19705	0.67	-0.9
4,398,333	+		HGI48_RS19705	0.67	-0.1
4,398,333	+		HGI48_RS19705	0.67	+0.9
4,398,334	-		HGI48_RS19705	0.67	-0.7
4,398,334	-		HGI48_RS19705	0.67	+0.5
4,398,334	-		HGI48_RS19705	0.67	+0.9
4,398,466	+		HGI48_RS19705	0.82	+1.7
4,398,467	-		HGI48_RS19705	0.82	+0.2
4,398,488	+		HGI48_RS19705	0.84	-1.0
4,398,488	+		HGI48_RS19705	0.84	+0.3
4,398,488	+		HGI48_RS19705	0.84	-0.3
4,398,488	+		HGI48_RS19705	0.84	-0.2
4,398,488	+		HGI48_RS19705	0.84	+0.2
4,398,489	-		HGI48_RS19705	0.84	+0.3
4,398,489	-		HGI48_RS19705	0.84	+0.9
4,398,489	-		HGI48_RS19705	0.84	+0.2
4,398,489	-		HGI48_RS19705	0.84	-0.1
4,398,489	-		HGI48_RS19705	0.84	+1.6
4,398,504	-		HGI48_RS19705	0.86	-0.1
4,398,569	+				-1.8
4,398,587	-				+0.5
4,398,587	-				-1.1
4,398,587	-				-1.1
4,398,661	+				-1.3
4,398,661	+				+1.3
4,398,680	-				+1.8
4,398,680	-				+0.3
4,398,681	+				-1.4
4,398,701	+				-1.9
4,398,701	+				-0.4
4,398,701	+				+1.2
4,398,702	-				-1.4
4,398,706	+				-0.3
4,398,706	+				-0.1
4,398,706	+				+0.2
4,398,707	-				-0.3
4,398,707	-				+1.2
4,398,747	+				+0.2
4,398,748	-				-1.4
4,398,752	+				-0.1
4,398,752	+				+1.4
4,398,752	+				+0.6
4,398,752	+				-0.8
4,398,752	+				-0.4
4,398,753	-				+0.7
4,398,753	-				-0.9
4,398,756	+				-0.4
4,398,756	+				-1.1
4,398,756	+				-0.0
4,398,757	-				-0.6
4,398,757	-				+0.3
4,398,757	-				+0.3
4,398,818	+				-0.1
4,398,819	-				+0.5
4,398,819	-				-0.1
4,398,887	+				-0.7
4,398,888	-				-2.1
4,398,888	-				+2.5
4,399,153	+		HGI48_RS19710	0.16	-1.5
4,399,154	-		HGI48_RS19710	0.16	-1.2
4,399,223	+		HGI48_RS19710	0.19	-0.1
4,399,224	-		HGI48_RS19710	0.19	+0.3
4,399,224	-				+1.7
4,399,238	+		HGI48_RS19710	0.20	-1.3
4,399,239	-				+0.3
4,399,239	-		HGI48_RS19710	0.20	-0.0
4,399,239	-		HGI48_RS19710	0.20	+0.1
4,399,283	+		HGI48_RS19710	0.21	+0.2
4,399,373	+				+0.9
4,399,373	+		HGI48_RS19710	0.25	-2.4
4,399,379	+		HGI48_RS19710	0.25	+0.9
4,399,436	+		HGI48_RS19710	0.27	-0.4
4,399,442	-		HGI48_RS19710	0.28	-0.6
4,399,442	-		HGI48_RS19710	0.28	-1.5
4,399,454	+		HGI48_RS19710	0.28	-0.1
4,399,455	-				+1.3
4,399,455	-		HGI48_RS19710	0.28	+0.9
4,399,577	+		HGI48_RS19710	0.33	+0.5
4,399,577	+		HGI48_RS19710	0.33	-1.5
4,399,577	+		HGI48_RS19710	0.33	-1.7
4,399,577	+		HGI48_RS19710	0.33	-0.4
4,399,577	+		HGI48_RS19710	0.33	+0.6
4,399,578	-		HGI48_RS19710	0.33	-0.8
4,399,578	-		HGI48_RS19710	0.33	-0.1
4,399,578	-		HGI48_RS19710	0.33	+0.9
4,399,578	-		HGI48_RS19710	0.33	-0.5
4,399,578	-		HGI48_RS19710	0.33	-1.4
4,399,598	+		HGI48_RS19710	0.34	+0.5
4,399,648	+		HGI48_RS19710	0.36	-1.1
4,399,648	+		HGI48_RS19710	0.36	-2.3
4,399,738	+		HGI48_RS19710	0.39	-1.1
4,399,739	-		HGI48_RS19710	0.39	-1.1
4,399,739	-		HGI48_RS19710	0.39	-0.1
4,400,150	+		HGI48_RS19710	0.55	-1.4
4,400,151	-		HGI48_RS19710	0.55	-0.1
4,400,151	-		HGI48_RS19710	0.55	+0.3
4,400,151	-		HGI48_RS19710	0.55	-2.5
4,400,151	-				+0.3
4,400,151	-		HGI48_RS19710	0.55	-2.5
4,400,151	-		HGI48_RS19710	0.55	-0.1
4,400,152	+		HGI48_RS19710	0.55	+0.3
4,400,188	+		HGI48_RS19710	0.57	-0.3
4,400,188	+		HGI48_RS19710	0.57	-0.4
4,400,188	+		HGI48_RS19710	0.57	+0.9
4,400,188	+		HGI48_RS19710	0.57	-0.8
4,400,188	+		HGI48_RS19710	0.57	-0.1
4,400,189	-		HGI48_RS19710	0.57	-0.7
4,400,189	-		HGI48_RS19710	0.57	+0.2
4,400,267	+		HGI48_RS19710	0.60	-0.5
4,400,268	-		HGI48_RS19710	0.60	+1.1
4,400,268	-		HGI48_RS19710	0.60	+1.1
4,400,342	-		HGI48_RS19710	0.63	-0.3
4,400,366	+		HGI48_RS19710	0.64	-1.1
4,400,398	+		HGI48_RS19710	0.65	-0.3
4,400,399	-		HGI48_RS19710	0.65	+3.7
4,400,399	-		HGI48_RS19710	0.65	-1.7
4,400,408	-		HGI48_RS19710	0.65	-1.2
4,400,441	-		HGI48_RS19710	0.67	-0.5
4,400,454	+		HGI48_RS19710	0.67	-0.8
4,400,455	-		HGI48_RS19710	0.67	-0.1
4,400,504	+		HGI48_RS19710	0.69	-1.4
4,400,505	-		HGI48_RS19710	0.69	-0.8
4,400,505	-		HGI48_RS19710	0.69	-0.4
4,400,540	-		HGI48_RS19710	0.70	-0.0
4,400,540	-				+2.1
4,400,540	-		HGI48_RS19710	0.70	+0.5
4,400,544	+		HGI48_RS19710	0.71	-0.9
4,400,597	+		HGI48_RS19710	0.73	-0.9
4,400,597	+		HGI48_RS19710	0.73	-1.1
4,400,597	+		HGI48_RS19710	0.73	+0.3
4,400,597	+		HGI48_RS19710	0.73	-0.6
4,400,597	+		HGI48_RS19710	0.73	+0.8
4,400,597	+		HGI48_RS19710	0.73	+1.2
4,400,598	-		HGI48_RS19710	0.73	-2.1
4,400,598	-		HGI48_RS19710	0.73	-0.8
4,400,605	+		HGI48_RS19710	0.73	+0.5
4,400,741	+		HGI48_RS19710	0.78	-0.1
4,400,741	+		HGI48_RS19710	0.78	-1.1
4,400,741	+		HGI48_RS19710	0.78	+1.1
4,400,742	-		HGI48_RS19710	0.78	+0.2
4,400,800	+		HGI48_RS19710	0.81	-1.7
4,400,800	+		HGI48_RS19710	0.81	+3.7
4,400,801	-		HGI48_RS19710	0.81	-0.1
4,400,801	-		HGI48_RS19710	0.81	+0.3
4,400,801	-		HGI48_RS19710	0.81	+0.9
4,400,878	+		HGI48_RS19710	0.84	-0.3
4,400,896	+		HGI48_RS19710	0.84	-1.7
4,400,896	+		HGI48_RS19710	0.84	+0.2
4,400,897	-		HGI48_RS19710	0.84	-1.9
4,400,924	+		HGI48_RS19710	0.85	-2.4
4,400,925	-		HGI48_RS19710	0.86	-0.4
4,401,326	-				-1.4
4,401,342	+				-0.8
4,401,343	-				+1.3
4,401,343	-				+0.1
4,401,379	+				-0.1
4,401,380	-				-0.3
4,401,412	+				-0.1
4,401,596	+		HGI48_RS19715	0.34	-3.0
4,401,718	-		HGI48_RS19715	0.56	-1.7
4,401,746	-		HGI48_RS19715	0.61	+1.1
4,401,746	-		HGI48_RS19715	0.61	-1.9
4,401,839	+		HGI48_RS19715	0.78	+0.2
4,401,839	+		HGI48_RS19715	0.78	-0.2
4,401,839	+				-0.7
4,401,840	-		HGI48_RS19715	0.78	+0.5
4,401,870	-		HGI48_RS19715	0.83	-1.1
4,401,870	-		HGI48_RS19715	0.83	-1.4
4,401,953	+				+0.9
4,401,953	+				-0.8
4,401,954	-				-0.3
4,401,954	-				-1.1
4,401,956	+				-0.8
4,401,956	+				+0.6
4,401,956	+				-0.7
4,401,972	+				+0.1
4,401,974	+				-0.7
4,401,974	+				-0.1
4,401,974	+				-0.8
4,401,975	-				-1.4
4,402,035	+				-0.1
4,402,035	+				-0.4
4,402,058	+				+1.7
4,402,058	+				+0.3
4,402,059	-				-0.3
4,402,059	-				+0.7
4,402,088	+				+0.4
4,402,107	-				+0.3
4,402,120	+				+0.2
4,402,121	-				-1.1
4,402,121	-				-1.0
4,402,167	+				+0.9
4,402,168	-				-1.7
4,402,174	+				+0.3
4,402,175	-				-0.3
4,402,175	-				+0.9
4,402,199	+				-0.8
4,402,249	-				+0.5
4,402,254	-				-0.8
4,402,254	-				+0.6
4,402,254	-				-0.3
4,402,254	-				-1.7
4,402,269	+				-1.1
4,402,270	-				-0.8
4,402,270	-				-1.1
4,402,293	-				-1.0