Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19045

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19040 and HGI48_RS19045 are separated by 86 nucleotidesHGI48_RS19045 and HGI48_RS19050 are separated by 29 nucleotides HGI48_RS19040: HGI48_RS19040 - small ribosomal subunit biogenesis GTPase RsgA, at 4,271,962 to 4,273,011 _RS19040 HGI48_RS19045: HGI48_RS19045 - phosphatidylserine decarboxylase, at 4,273,098 to 4,273,994 _RS19045 HGI48_RS19050: HGI48_RS19050 - miniconductance mechanosensitive channel MscM, at 4,274,024 to 4,277,347 _RS19050 Position (kb) 4273 4274Strain fitness (log2 ratio) -2 -1 0 1at 4273.016 kb on + strandat 4273.016 kb on + strandat 4273.016 kb on + strandat 4273.016 kb on + strandat 4273.016 kb on + strandat 4273.017 kb on - strandat 4273.034 kb on + strandat 4273.036 kb on + strandat 4273.036 kb on + strandat 4274.061 kb on + strandat 4274.061 kb on + strandat 4274.062 kb on - strandat 4274.234 kb on + strandat 4274.368 kb on + strand, within HGI48_RS19050at 4274.369 kb on - strand, within HGI48_RS19050at 4274.369 kb on - strand, within HGI48_RS19050at 4274.400 kb on + strand, within HGI48_RS19050at 4274.401 kb on - strand, within HGI48_RS19050at 4274.560 kb on - strand, within HGI48_RS19050at 4274.582 kb on - strand, within HGI48_RS19050at 4274.582 kb on - strand, within HGI48_RS19050at 4274.663 kb on + strand, within HGI48_RS19050at 4274.719 kb on - strand, within HGI48_RS19050at 4274.919 kb on + strand, within HGI48_RS19050at 4274.919 kb on + strand, within HGI48_RS19050at 4274.919 kb on + strand, within HGI48_RS19050at 4274.920 kb on - strand, within HGI48_RS19050at 4274.920 kb on - strand, within HGI48_RS19050at 4274.920 kb on - strand, within HGI48_RS19050

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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4,273,016 + +0.6
4,273,016 + +0.1
4,273,016 + -1.7
4,273,016 + -0.7
4,273,016 + +0.3
4,273,017 - -0.9
4,273,034 + +1.5
4,273,036 + -0.1
4,273,036 + -1.1
4,274,061 + +0.3
4,274,061 + -1.4
4,274,062 - -1.3
4,274,234 + +0.2
4,274,368 + HGI48_RS19050 0.10 -0.1
4,274,369 - HGI48_RS19050 0.10 -0.1
4,274,369 - HGI48_RS19050 0.10 -1.9
4,274,400 + HGI48_RS19050 0.11 -0.4
4,274,401 - HGI48_RS19050 0.11 -0.4
4,274,560 - HGI48_RS19050 0.16 -1.2
4,274,582 - HGI48_RS19050 0.17 -0.4
4,274,582 - HGI48_RS19050 0.17 +0.4
4,274,663 + HGI48_RS19050 0.19 -0.9
4,274,719 - HGI48_RS19050 0.21 +0.6
4,274,919 + HGI48_RS19050 0.27 -2.6
4,274,919 + HGI48_RS19050 0.27 -0.9
4,274,919 + HGI48_RS19050 0.27 -1.0
4,274,920 - HGI48_RS19050 0.27 -1.0
4,274,920 - HGI48_RS19050 0.27 -0.0
4,274,920 - HGI48_RS19050 0.27 +0.9

Or see this region's nucleotide sequence