Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17620

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS17610 and HGI48_RS17615 are separated by 255 nucleotidesHGI48_RS17615 and HGI48_RS17620 are separated by 56 nucleotidesHGI48_RS17620 and HGI48_RS17625 are separated by 417 nucleotides HGI48_RS17610: HGI48_RS17610 - excinuclease ABC subunit UvrA, at 3,943,107 to 3,945,938 _RS17610 HGI48_RS17615: HGI48_RS17615 - single-stranded DNA-binding protein SSB1, at 3,946,194 to 3,946,742 _RS17615 HGI48_RS17620: HGI48_RS17620 - hypothetical protein, at 3,946,799 to 3,947,047 _RS17620 HGI48_RS17625: HGI48_RS17625 - hypothetical protein, at 3,947,465 to 3,947,953 _RS17625 Position (kb) 3946 3947 3948Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3945.802 kb on + strandat 3945.802 kb on + strandat 3945.803 kb on - strandat 3945.803 kb on - strandat 3945.803 kb on - strandat 3945.803 kb on - strandat 3945.890 kb on + strandat 3945.890 kb on + strandat 3945.890 kb on + strandat 3945.891 kb on - strandat 3945.932 kb on + strandat 3945.956 kb on + strandat 3945.990 kb on - strandat 3945.990 kb on - strandat 3945.990 kb on - strandat 3945.994 kb on + strandat 3946.010 kb on + strandat 3946.123 kb on + strandat 3946.123 kb on + strandat 3946.123 kb on + strandat 3946.123 kb on + strandat 3946.123 kb on + strandat 3946.124 kb on - strandat 3946.144 kb on + strandat 3946.144 kb on + strandat 3946.158 kb on + strandat 3946.741 kb on - strandat 3946.741 kb on - strandat 3946.743 kb on + strandat 3946.743 kb on + strandat 3946.744 kb on - strandat 3946.782 kb on + strandat 3946.783 kb on - strandat 3946.783 kb on - strandat 3946.783 kb on - strandat 3946.819 kb on - strandat 3946.819 kb on - strandat 3946.900 kb on + strand, within HGI48_RS17620at 3946.900 kb on + strand, within HGI48_RS17620at 3946.900 kb on + strand, within HGI48_RS17620at 3946.900 kb on + strand, within HGI48_RS17620at 3946.901 kb on - strand, within HGI48_RS17620at 3947.008 kb on + strand, within HGI48_RS17620at 3947.009 kb on - strand, within HGI48_RS17620at 3947.019 kb on + strand, within HGI48_RS17620at 3947.020 kb on - strandat 3947.051 kb on + strandat 3947.052 kb on - strandat 3947.121 kb on + strandat 3947.121 kb on + strandat 3947.121 kb on + strandat 3947.122 kb on - strandat 3947.122 kb on - strandat 3947.122 kb on - strandat 3947.122 kb on - strandat 3947.122 kb on - strandat 3947.136 kb on + strandat 3947.137 kb on - strandat 3947.137 kb on - strandat 3947.140 kb on - strandat 3947.160 kb on + strandat 3947.160 kb on + strandat 3947.216 kb on + strandat 3947.216 kb on + strandat 3947.216 kb on + strandat 3947.216 kb on + strandat 3947.220 kb on + strandat 3947.220 kb on + strandat 3947.220 kb on + strandat 3947.220 kb on + strandat 3947.221 kb on - strandat 3947.221 kb on - strandat 3947.256 kb on + strandat 3947.257 kb on - strandat 3947.259 kb on + strandat 3947.276 kb on - strandat 3947.276 kb on - strandat 3947.294 kb on + strandat 3947.295 kb on - strandat 3947.309 kb on - strandat 3947.317 kb on + strandat 3947.317 kb on + strandat 3947.318 kb on - strandat 3947.330 kb on + strandat 3947.345 kb on + strandat 3947.351 kb on - strandat 3947.382 kb on - strandat 3947.382 kb on - strandat 3947.395 kb on - strandat 3947.398 kb on + strandat 3947.398 kb on + strandat 3947.399 kb on - strandat 3947.437 kb on + strandat 3947.437 kb on + strandat 3947.437 kb on + strandat 3947.438 kb on - strandat 3947.453 kb on + strandat 3947.453 kb on + strandat 3947.472 kb on + strandat 3947.473 kb on - strandat 3947.473 kb on - strandat 3947.520 kb on + strandat 3947.546 kb on - strand, within HGI48_RS17625at 3947.546 kb on - strand, within HGI48_RS17625at 3947.546 kb on - strand, within HGI48_RS17625at 3947.546 kb on - strand, within HGI48_RS17625at 3947.561 kb on - strand, within HGI48_RS17625at 3947.578 kb on + strand, within HGI48_RS17625at 3947.598 kb on - strand, within HGI48_RS17625at 3947.619 kb on + strandat 3947.730 kb on + strand, within HGI48_RS17625at 3947.745 kb on + strandat 3947.746 kb on - strand, within HGI48_RS17625at 3947.774 kb on - strand, within HGI48_RS17625at 3947.803 kb on + strand, within HGI48_RS17625at 3947.803 kb on + strand, within HGI48_RS17625at 3947.803 kb on + strand, within HGI48_RS17625at 3947.804 kb on - strand, within HGI48_RS17625at 3947.805 kb on + strand, within HGI48_RS17625at 3947.806 kb on - strand, within HGI48_RS17625at 3947.806 kb on - strand, within HGI48_RS17625at 3947.848 kb on - strand, within HGI48_RS17625at 3947.864 kb on - strandat 3947.954 kb on + strandat 3947.992 kb on + strandat 3947.993 kb on - strandat 3947.993 kb on - strandat 3948.041 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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3,945,802 + +1.4
3,945,802 + -0.2
3,945,803 - +0.2
3,945,803 - +0.3
3,945,803 - +0.4
3,945,803 - -0.3
3,945,890 + -0.2
3,945,890 + -1.6
3,945,890 + -0.9
3,945,891 - -2.5
3,945,932 + -0.2
3,945,956 + +1.2
3,945,990 - -2.0
3,945,990 - -0.9
3,945,990 - -1.8
3,945,994 + -0.2
3,946,010 + +0.5
3,946,123 + -0.1
3,946,123 + -0.2
3,946,123 + -0.4
3,946,123 + +0.9
3,946,123 + +0.6
3,946,124 - +0.3
3,946,144 + -0.3
3,946,144 + -0.6
3,946,158 + -0.8
3,946,741 - -1.8
3,946,741 - -0.8
3,946,743 + -0.2
3,946,743 + +0.2
3,946,744 - -0.4
3,946,782 + +0.8
3,946,783 - -1.6
3,946,783 - -1.0
3,946,783 - -0.8
3,946,819 - -0.2
3,946,819 - -0.6
3,946,900 + HGI48_RS17620 0.41 -1.8
3,946,900 + HGI48_RS17620 0.41 -1.5
3,946,900 + HGI48_RS17620 0.41 -1.8
3,946,900 + HGI48_RS17620 0.41 -1.2
3,946,901 - HGI48_RS17620 0.41 +0.1
3,947,008 + HGI48_RS17620 0.84 -1.0
3,947,009 - HGI48_RS17620 0.84 +0.7
3,947,019 + HGI48_RS17620 0.88 +0.4
3,947,020 - -0.8
3,947,051 + +0.1
3,947,052 - +0.1
3,947,121 + -0.6
3,947,121 + +0.6
3,947,121 + +0.0
3,947,122 - +0.6
3,947,122 - -0.8
3,947,122 - -0.5
3,947,122 - -2.3
3,947,122 - +0.1
3,947,136 + -0.9
3,947,137 - -0.2
3,947,137 - +0.6
3,947,140 - -0.8
3,947,160 + -0.4
3,947,160 + -1.2
3,947,216 + +0.5
3,947,216 + -0.0
3,947,216 + +2.8
3,947,216 + +1.7
3,947,220 + -0.2
3,947,220 + +0.2
3,947,220 + -1.2
3,947,220 + +1.1
3,947,221 - +0.1
3,947,221 - -0.5
3,947,256 + -1.8
3,947,257 - +0.0
3,947,259 + -0.4
3,947,276 - -0.8
3,947,276 - +0.1
3,947,294 + -0.4
3,947,295 - +0.6
3,947,309 - -0.5
3,947,317 + +0.0
3,947,317 + -1.8
3,947,318 - -1.8
3,947,330 + +1.6
3,947,345 + -0.2
3,947,351 - -0.2
3,947,382 - +0.8
3,947,382 - +0.2
3,947,395 - -1.3
3,947,398 + +0.1
3,947,398 + -0.7
3,947,399 - +0.2
3,947,437 + -1.2
3,947,437 + -0.0
3,947,437 + -0.5
3,947,438 - -0.4
3,947,453 + +0.4
3,947,453 + -0.5
3,947,472 + +2.1
3,947,473 - -0.2
3,947,473 - -1.5
3,947,520 + -0.8
3,947,546 - HGI48_RS17625 0.17 -1.2
3,947,546 - HGI48_RS17625 0.17 -0.1
3,947,546 - HGI48_RS17625 0.17 +0.2
3,947,546 - HGI48_RS17625 0.17 -0.1
3,947,561 - HGI48_RS17625 0.20 -0.1
3,947,578 + HGI48_RS17625 0.23 +0.8
3,947,598 - HGI48_RS17625 0.27 -1.2
3,947,619 + +1.2
3,947,730 + HGI48_RS17625 0.54 -0.1
3,947,745 + +0.8
3,947,746 - HGI48_RS17625 0.57 -0.8
3,947,774 - HGI48_RS17625 0.63 +0.1
3,947,803 + HGI48_RS17625 0.69 -2.3
3,947,803 + HGI48_RS17625 0.69 -0.5
3,947,803 + HGI48_RS17625 0.69 +0.0
3,947,804 - HGI48_RS17625 0.69 -1.2
3,947,805 + HGI48_RS17625 0.70 -1.2
3,947,806 - HGI48_RS17625 0.70 +0.8
3,947,806 - HGI48_RS17625 0.70 +0.6
3,947,848 - HGI48_RS17625 0.78 +0.1
3,947,864 - +0.2
3,947,954 + -0.2
3,947,992 + +0.3
3,947,993 - -0.2
3,947,993 - +0.3
3,948,041 + +0.6

Or see this region's nucleotide sequence