Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16425

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,679,755	-		HGI48_RS16420	0.66	-1.8
3,679,782	-				+1.3
3,679,844	+				+0.7
3,679,844	+		HGI48_RS16420	0.72	+0.4
3,679,845	-		HGI48_RS16420	0.72	-0.5
3,679,845	-		HGI48_RS16420	0.72	-1.6
3,679,845	-		HGI48_RS16420	0.72	-0.2
3,679,845	-		HGI48_RS16420	0.72	-3.2
3,679,845	-		HGI48_RS16420	0.72	-0.4
3,679,845	-		HGI48_RS16420	0.72	+0.9
3,679,845	-				+1.7
3,679,942	+		HGI48_RS16420	0.79	-0.1
3,679,942	+		HGI48_RS16420	0.79	-2.8
3,679,942	+		HGI48_RS16420	0.79	+0.7
3,679,968	-		HGI48_RS16420	0.80	+0.3
3,680,033	-		HGI48_RS16420	0.85	+0.7
3,680,337	+				+0.2
3,680,338	-				+1.0
3,680,338	-				+0.7
3,680,348	+				-2.1
3,680,348	+				-0.2
3,680,348	+				+0.7
3,680,349	-				-1.3
3,680,349	-				+0.7
3,680,349	-				-0.2
3,680,361	-				+0.3
3,680,446	+				-0.4
3,680,447	-				+0.1
3,680,607	+		HGI48_RS16425	0.16	-2.1
3,680,607	+		HGI48_RS16425	0.16	-0.2
3,680,607	+		HGI48_RS16425	0.16	-1.3
3,680,607	+		HGI48_RS16425	0.16	+1.6
3,680,608	-		HGI48_RS16425	0.16	+0.1
3,680,608	-		HGI48_RS16425	0.16	-0.4
3,680,608	-		HGI48_RS16425	0.16	-2.1
3,680,608	-		HGI48_RS16425	0.16	-0.2
3,680,608	-		HGI48_RS16425	0.16	+0.1
3,680,608	-		HGI48_RS16425	0.16	-0.9
3,680,608	-		HGI48_RS16425	0.16	-1.6
3,680,608	-		HGI48_RS16425	0.16	-1.3
3,680,628	+		HGI48_RS16425	0.17	-0.9
3,680,629	-		HGI48_RS16425	0.17	-0.5
3,680,648	+		HGI48_RS16425	0.18	+1.3
3,680,648	+		HGI48_RS16425	0.18	+1.6
3,680,648	+		HGI48_RS16425	0.18	-2.5
3,680,649	-		HGI48_RS16425	0.18	-0.3
3,680,649	-		HGI48_RS16425	0.18	-1.3
3,680,749	-		HGI48_RS16425	0.24	-0.9
3,680,835	+		HGI48_RS16425	0.29	-0.7
3,680,835	+		HGI48_RS16425	0.29	+0.2
3,680,841	+		HGI48_RS16425	0.29	+0.4
3,680,841	+		HGI48_RS16425	0.29	+0.4
3,680,842	-		HGI48_RS16425	0.30	+0.5
3,680,925	+		HGI48_RS16425	0.34	+0.7
3,680,925	+		HGI48_RS16425	0.34	-0.4
3,681,043	+		HGI48_RS16425	0.41	+0.4
3,681,126	+		HGI48_RS16425	0.46	+0.7
3,681,126	+				+1.4
3,681,126	+		HGI48_RS16425	0.46	-0.3
3,681,126	+		HGI48_RS16425	0.46	-1.5
3,681,126	+		HGI48_RS16425	0.46	-0.4
3,681,126	+		HGI48_RS16425	0.46	+1.2
3,681,126	+		HGI48_RS16425	0.46	+0.4
3,681,127	-				+2.1
3,681,139	-				+0.1
3,681,141	+		HGI48_RS16425	0.47	-0.1
3,681,141	+		HGI48_RS16425	0.47	-0.9
3,681,142	-		HGI48_RS16425	0.47	+0.5
3,681,222	+		HGI48_RS16425	0.52	-1.1
3,681,222	+		HGI48_RS16425	0.52	-0.1
3,681,222	+		HGI48_RS16425	0.52	+0.3
3,681,223	-		HGI48_RS16425	0.52	+0.3
3,681,223	-		HGI48_RS16425	0.52	-1.6
3,681,223	-		HGI48_RS16425	0.52	-2.2
3,681,223	-		HGI48_RS16425	0.52	-0.3
3,681,223	-		HGI48_RS16425	0.52	+0.1
3,681,303	+		HGI48_RS16425	0.57	+0.1
3,681,370	-				+1.7
3,681,381	+		HGI48_RS16425	0.61	+0.9
3,681,417	-		HGI48_RS16425	0.64	+0.0
3,681,417	-		HGI48_RS16425	0.64	-2.1
3,681,456	+		HGI48_RS16425	0.66	+0.3
3,681,456	+				+0.1
3,681,456	+		HGI48_RS16425	0.66	+0.4
3,681,457	-		HGI48_RS16425	0.66	-0.3
3,681,457	-		HGI48_RS16425	0.66	-0.9
3,681,467	+		HGI48_RS16425	0.67	+0.9
3,681,467	+		HGI48_RS16425	0.67	-1.1
3,681,467	+		HGI48_RS16425	0.67	-1.1
3,681,467	+		HGI48_RS16425	0.67	+0.3
3,681,467	+		HGI48_RS16425	0.67	-0.3
3,681,467	+		HGI48_RS16425	0.67	-0.3
3,681,468	-		HGI48_RS16425	0.67	-0.3
3,681,468	-		HGI48_RS16425	0.67	+0.3
3,681,468	-		HGI48_RS16425	0.67	-2.6
3,681,468	-				+0.1
3,681,468	-		HGI48_RS16425	0.67	-0.2
3,681,471	+		HGI48_RS16425	0.67	+0.5
3,681,471	+		HGI48_RS16425	0.67	+0.3
3,681,471	+		HGI48_RS16425	0.67	+1.7
3,681,471	+		HGI48_RS16425	0.67	-0.6
3,681,471	+		HGI48_RS16425	0.67	-0.9
3,681,471	+		HGI48_RS16425	0.67	+0.2
3,681,543	+				-0.3
3,681,543	+		HGI48_RS16425	0.71	-0.3
3,681,544	-		HGI48_RS16425	0.71	+0.5
3,681,681	+		HGI48_RS16425	0.79	+1.0
3,681,681	+		HGI48_RS16425	0.79	+0.3
3,681,682	-		HGI48_RS16425	0.79	-1.3
3,681,694	-		HGI48_RS16425	0.80	+0.1
3,681,694	-		HGI48_RS16425	0.80	+0.1
3,681,694	-		HGI48_RS16425	0.80	-1.0
3,681,876	+				-0.9
3,681,877	-				-1.1
3,681,888	+				-1.6
3,681,888	+				+1.3
3,681,888	+				+1.4
3,681,888	+				-1.4
3,681,888	+				-0.9
3,681,889	-				+0.7
3,681,889	-				+0.9
3,681,889	-				-0.2
3,681,889	-				-0.9
3,681,889	-				-1.5
3,681,889	-				+0.1
3,681,890	+				-1.6
3,681,890	+				+0.1
3,681,890	+				-0.5
3,681,890	+				-1.8
3,681,890	+				+0.1
3,681,890	+				+1.5
3,681,890	+				-0.0
3,681,890	+				-1.5
3,681,891	-				-0.3
3,681,891	-				-1.6
3,681,891	-				-0.3
3,681,891	-				-0.1
3,681,891	-				-0.7
3,681,891	-				+0.4
3,681,973	-				-1.1
3,681,993	+				+0.7
3,681,993	+				+0.7
3,681,993	+				+0.4
3,681,993	+				-0.9
3,681,993	+				-0.0
3,681,993	+				-0.3
3,681,994	-				-0.5
3,682,239	-				+0.7
3,682,431	-				-0.9
3,682,604	+		HGI48_RS16430	0.11	-0.3
3,682,684	+		HGI48_RS16430	0.17	+0.0
3,682,684	+		HGI48_RS16430	0.17	-0.6
3,682,691	+		HGI48_RS16430	0.18	-0.9
3,682,691	+		HGI48_RS16430	0.18	-0.5
3,682,692	-		HGI48_RS16430	0.18	-0.2
3,682,692	-		HGI48_RS16430	0.18	-1.6
3,682,692	-		HGI48_RS16430	0.18	+0.5
3,682,692	-		HGI48_RS16430	0.18	-0.4
3,682,695	+		HGI48_RS16430	0.18	+0.5
3,682,695	+		HGI48_RS16430	0.18	-0.4
3,682,695	+		HGI48_RS16430	0.18	+0.6
3,682,695	+		HGI48_RS16430	0.18	-0.6
3,682,695	+		HGI48_RS16430	0.18	-0.3
3,682,695	+		HGI48_RS16430	0.18	-0.3
3,682,695	+				+0.7
3,682,695	+		HGI48_RS16430	0.18	-1.6
3,682,695	+		HGI48_RS16430	0.18	-0.9
3,682,695	+		HGI48_RS16430	0.18	-0.0
3,682,695	+		HGI48_RS16430	0.18	+0.9
3,682,695	+		HGI48_RS16430	0.18	+1.2
3,682,696	-		HGI48_RS16430	0.18	-0.0
3,682,696	-		HGI48_RS16430	0.18	+0.5
3,682,696	-		HGI48_RS16430	0.18	+0.3
3,682,696	-		HGI48_RS16430	0.18	-0.3
3,682,696	-		HGI48_RS16430	0.18	-0.3
3,682,949	+		HGI48_RS16430	0.36	+0.0
3,682,949	+		HGI48_RS16430	0.36	-0.8
3,682,950	-				+0.1