Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13965

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,119,672	-		HGI48_RS13950	0.40	+0.5
3,119,786	+		HGI48_RS13950	0.76	+0.1
3,119,787	-		HGI48_RS13950	0.76	-1.1
3,119,787	-		HGI48_RS13950	0.76	-0.9
3,119,789	+		HGI48_RS13950	0.77	-0.2
3,119,790	-		HGI48_RS13950	0.77	-1.5
3,119,841	-				-0.2
3,119,845	+				-0.0
3,119,865	+				-0.1
3,119,865	+				+1.1
3,119,866	-				-0.5
3,120,121	+				-0.4
3,120,122	-				-0.4
3,120,122	-				-1.1
3,120,122	-				-0.5
3,120,132	+				+0.1
3,120,132	+				+0.7
3,120,132	+				+0.2
3,120,144	+				-0.5
3,120,145	-				-0.8
3,120,150	+				-0.4
3,120,151	-				-1.9
3,120,151	-				+0.2
3,120,156	-				-0.8
3,120,215	+				-0.3
3,120,216	-				-1.2
3,120,231	+				+0.2
3,120,232	-				-1.3
3,120,232	-				-0.2
3,120,232	-				+0.9
3,120,248	+				-0.3
3,120,249	-				+0.5
3,120,249	-				+0.1
3,120,249	-				+1.0
3,120,249	-				+1.0
3,120,307	+				-0.4
3,120,307	+				+0.1
3,120,308	-				+0.7
3,120,440	+		HGI48_RS13960	0.11	-0.9
3,120,482	+		HGI48_RS13960	0.36	+0.7
3,120,483	-		HGI48_RS13960	0.36	-1.9
3,120,524	+				-0.1
3,120,524	+		HGI48_RS13960	0.60	-0.5
3,120,524	+		HGI48_RS13960	0.60	-1.5
3,120,524	+		HGI48_RS13960	0.60	+0.8
3,120,524	+		HGI48_RS13960	0.60	-0.2
3,120,524	+		HGI48_RS13960	0.60	-0.3
3,120,524	+		HGI48_RS13960	0.60	+0.1
3,120,524	+				-0.5
3,120,525	-		HGI48_RS13960	0.61	-1.3
3,120,525	-		HGI48_RS13960	0.61	+0.0
3,120,525	-		HGI48_RS13960	0.61	+1.2
3,120,656	+				+0.9
3,120,656	+				+0.9
3,120,656	+				+0.5
3,120,656	+				+0.9
3,120,656	+				+0.2
3,120,657	-				-1.3
3,120,657	-				-0.2
3,120,806	+				-0.4
3,120,807	-				-1.5
3,120,807	-				-2.1
3,120,828	-				+0.3
3,120,872	-				+1.8
3,120,944	+		HGI48_RS13965	0.15	-1.9
3,120,944	+				+1.5
3,120,944	+		HGI48_RS13965	0.15	+0.7
3,120,945	-		HGI48_RS13965	0.15	-1.8
3,120,945	-				+2.5
3,120,945	-		HGI48_RS13965	0.15	-1.5
3,121,024	-		HGI48_RS13965	0.19	+0.7
3,121,024	-				+1.5
3,121,025	+		HGI48_RS13965	0.19	+0.1
3,121,025	+		HGI48_RS13965	0.19	-0.5
3,121,025	+		HGI48_RS13965	0.19	+0.1
3,121,026	-		HGI48_RS13965	0.19	-0.1
3,121,026	-				+1.5
3,121,026	-		HGI48_RS13965	0.19	+0.1
3,121,026	-		HGI48_RS13965	0.19	-1.1
3,121,059	-		HGI48_RS13965	0.21	-1.3
3,121,093	-				+1.2
3,121,093	-		HGI48_RS13965	0.23	+0.1
3,121,169	-		HGI48_RS13965	0.27	-0.9
3,121,183	+		HGI48_RS13965	0.28	-0.5
3,121,184	-		HGI48_RS13965	0.28	-0.1
3,121,184	-		HGI48_RS13965	0.28	+0.6
3,121,184	-		HGI48_RS13965	0.28	+1.2
3,121,213	+		HGI48_RS13965	0.29	-0.9
3,121,213	+		HGI48_RS13965	0.29	-0.1
3,121,213	+				-0.1
3,121,213	+		HGI48_RS13965	0.29	-0.6
3,121,213	+		HGI48_RS13965	0.29	-2.4
3,121,213	+		HGI48_RS13965	0.29	-0.9
3,121,214	-		HGI48_RS13965	0.29	+0.8
3,121,214	-		HGI48_RS13965	0.29	-2.9
3,121,214	-		HGI48_RS13965	0.29	+0.1
3,121,214	-		HGI48_RS13965	0.29	-1.5
3,121,218	+		HGI48_RS13965	0.30	-2.5
3,121,218	+		HGI48_RS13965	0.30	-0.5
3,121,308	-		HGI48_RS13965	0.35	-0.8
3,121,374	+		HGI48_RS13965	0.38	+0.2
3,121,374	+		HGI48_RS13965	0.38	-0.0
3,121,375	-				+1.1
3,121,433	-				-1.1
3,121,615	+		HGI48_RS13965	0.51	+0.5
3,121,616	-		HGI48_RS13965	0.51	-0.3
3,121,616	-		HGI48_RS13965	0.51	-0.0
3,121,690	-		HGI48_RS13965	0.55	+0.5
3,121,690	-		HGI48_RS13965	0.55	+0.1
3,121,722	+		HGI48_RS13965	0.57	+0.1
3,121,750	+		HGI48_RS13965	0.58	-0.3
3,121,750	+		HGI48_RS13965	0.58	+0.5
3,121,750	+				+1.1
3,121,750	+		HGI48_RS13965	0.58	-0.5
3,121,750	+		HGI48_RS13965	0.58	-0.2
3,121,750	+		HGI48_RS13965	0.58	-0.1
3,121,750	+		HGI48_RS13965	0.58	-1.4
3,121,750	+		HGI48_RS13965	0.58	-0.1
3,121,750	+		HGI48_RS13965	0.58	-0.1
3,121,751	-		HGI48_RS13965	0.58	+0.0
3,121,751	-		HGI48_RS13965	0.58	+0.3
3,121,751	-		HGI48_RS13965	0.58	-2.7
3,121,752	+				+2.1
3,121,752	+				+0.5
3,121,752	+		HGI48_RS13965	0.58	+0.1
3,121,752	+		HGI48_RS13965	0.58	-0.0
3,121,752	+		HGI48_RS13965	0.58	-0.1
3,121,753	-				+1.1
3,121,753	-		HGI48_RS13965	0.58	-0.5
3,121,753	-		HGI48_RS13965	0.58	-1.1
3,121,753	-		HGI48_RS13965	0.58	-0.9
3,121,754	+		HGI48_RS13965	0.58	-0.5
3,121,754	+				-0.1
3,121,754	+		HGI48_RS13965	0.58	-0.8
3,121,754	+		HGI48_RS13965	0.58	-2.4
3,121,754	+		HGI48_RS13965	0.58	-0.9
3,121,754	+		HGI48_RS13965	0.58	-0.3
3,121,754	+		HGI48_RS13965	0.58	-0.3
3,121,754	+		HGI48_RS13965	0.58	-1.4
3,121,754	+		HGI48_RS13965	0.58	-2.3
3,121,754	+		HGI48_RS13965	0.58	+0.1
3,121,754	+				+0.9
3,121,755	-		HGI48_RS13965	0.59	+0.6
3,121,755	-		HGI48_RS13965	0.59	-0.2
3,121,755	-		HGI48_RS13965	0.59	-0.4
3,121,755	-				+2.5
3,121,755	-		HGI48_RS13965	0.59	+1.3
3,121,755	-		HGI48_RS13965	0.59	+0.5
3,121,755	-		HGI48_RS13965	0.59	-0.8
3,121,755	-		HGI48_RS13965	0.59	-0.3
3,121,755	-		HGI48_RS13965	0.59	-0.0
3,121,755	-		HGI48_RS13965	0.59	+0.1
3,121,828	-		HGI48_RS13965	0.62	-1.3
3,121,855	+		HGI48_RS13965	0.64	+0.1
3,121,856	-		HGI48_RS13965	0.64	-0.1
3,121,860	-		HGI48_RS13965	0.64	-0.3
3,121,860	-		HGI48_RS13965	0.64	-0.0
3,121,905	-				+0.5
3,121,906	+		HGI48_RS13965	0.67	+0.8
3,121,906	+		HGI48_RS13965	0.67	-0.8
3,121,906	+		HGI48_RS13965	0.67	-1.1
3,121,907	-		HGI48_RS13965	0.67	+0.4
3,121,907	-		HGI48_RS13965	0.67	-0.3
3,121,934	+		HGI48_RS13965	0.68	-0.4
3,121,934	+		HGI48_RS13965	0.68	+1.1
3,121,935	-		HGI48_RS13965	0.68	-2.3
3,121,935	-				-0.5
3,121,935	-		HGI48_RS13965	0.68	+0.7
3,121,935	-		HGI48_RS13965	0.68	-1.1
3,121,935	-		HGI48_RS13965	0.68	-0.9
3,121,935	-		HGI48_RS13965	0.68	-0.5
3,121,935	-		HGI48_RS13965	0.68	-0.4
3,121,935	-		HGI48_RS13965	0.68	-2.5
3,121,935	-		HGI48_RS13965	0.68	-2.0
3,121,935	-		HGI48_RS13965	0.68	-0.4
3,121,936	+		HGI48_RS13965	0.68	-1.1
3,121,936	+		HGI48_RS13965	0.68	-0.4
3,121,937	-		HGI48_RS13965	0.68	-0.5
3,121,953	-				-1.1
3,121,979	+				-1.1
3,122,013	+		HGI48_RS13965	0.72	-2.1
3,122,013	+		HGI48_RS13965	0.72	-0.9
3,122,013	+		HGI48_RS13965	0.72	+0.8
3,122,013	+		HGI48_RS13965	0.72	-0.0
3,122,070	-		HGI48_RS13965	0.75	-0.3
3,122,090	+		HGI48_RS13965	0.77	-3.4
3,122,090	+		HGI48_RS13965	0.77	-0.1
3,122,091	-		HGI48_RS13965	0.77	-0.3
3,122,091	-		HGI48_RS13965	0.77	-0.9
3,122,137	+		HGI48_RS13965	0.79	-2.3
3,122,164	+		HGI48_RS13965	0.81	-0.5
3,122,164	+		HGI48_RS13965	0.81	-2.1
3,122,165	-		HGI48_RS13965	0.81	-0.9
3,122,181	-		HGI48_RS13965	0.81	+0.5
3,122,399	+				-2.1
3,122,399	+				-1.3
3,122,400	-				+0.5
3,122,400	-				-0.4
3,122,407	+				+0.7
3,122,407	+				-0.2
3,122,660	+				+0.2
3,122,660	+				+0.1
3,122,660	+				-1.5
3,122,660	+				-0.0
3,122,660	+				+0.2
3,122,660	+				+0.1
3,122,661	-				-0.5
3,122,661	-				-1.5
3,122,661	-				-2.1
3,122,661	-				-1.0
3,122,680	+				+0.2
3,122,680	+				-1.1
3,122,680	+				+0.5
3,122,680	+				-2.5
3,122,681	-				-0.1
3,122,681	-				+0.4
3,122,726	-				+0.8
3,122,838	-				-1.5
3,122,838	-				-2.3
3,122,867	-				+0.2
3,122,911	+				-0.5
3,122,911	+				+1.1
3,122,911	+				+0.1
3,122,928	+				-2.1
3,122,959	+				-1.3
3,122,959	+				-2.1
3,122,971	+				-0.1
3,122,971	+				-1.0
3,122,972	-				+0.8
3,123,038	+				-0.5
3,123,038	+				-1.9
3,123,038	+				+0.1
3,123,038	+				-0.9
3,123,039	-				-0.0
3,123,039	-				+0.7
3,123,039	-				-0.9
3,123,089	+				-1.3
3,123,119	-				+1.1
3,123,127	+				-1.9
3,123,133	+				+0.1
3,123,145	+				-0.3
3,123,145	+				-0.4
3,123,171	-				-0.2
3,123,171	-				-0.5
3,123,223	+				-1.3
3,123,224	-				-1.1
3,123,224	-				-0.5
3,123,235	+				+0.9
3,123,440	+				+0.5
3,123,440	+		HGI48_RS13970	0.35	+0.2
3,123,440	+		HGI48_RS13970	0.35	+0.5
3,123,441	-		HGI48_RS13970	0.35	-2.0