Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13560

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,966,271	+		HGI48_RS13555	0.38	+0.2
2,966,297	+		HGI48_RS13555	0.40	+1.2
2,966,325	+				+0.9
2,966,325	+		HGI48_RS13555	0.42	+0.0
2,966,326	-		HGI48_RS13555	0.42	+0.1
2,966,338	-		HGI48_RS13555	0.43	+0.6
2,966,338	-		HGI48_RS13555	0.43	-1.9
2,966,340	+		HGI48_RS13555	0.44	-0.2
2,966,341	-		HGI48_RS13555	0.44	+0.9
2,966,350	+		HGI48_RS13555	0.45	-1.0
2,966,350	+		HGI48_RS13555	0.45	+0.1
2,966,351	-		HGI48_RS13555	0.45	+2.3
2,966,351	-		HGI48_RS13555	0.45	+0.1
2,966,379	+		HGI48_RS13555	0.47	+0.6
2,966,379	+		HGI48_RS13555	0.47	+0.1
2,966,380	-		HGI48_RS13555	0.47	-1.1
2,966,424	+		HGI48_RS13555	0.51	-0.8
2,966,473	+				+0.4
2,966,473	+		HGI48_RS13555	0.55	+0.4
2,966,473	+		HGI48_RS13555	0.55	-0.1
2,966,473	+		HGI48_RS13555	0.55	-1.0
2,966,473	+		HGI48_RS13555	0.55	-0.6
2,966,473	+		HGI48_RS13555	0.55	-0.9
2,966,474	-		HGI48_RS13555	0.55	+1.1
2,966,474	-		HGI48_RS13555	0.55	-0.4
2,966,474	-		HGI48_RS13555	0.55	+0.6
2,966,474	-				-1.1
2,966,481	+				-1.1
2,966,481	+		HGI48_RS13555	0.56	-0.6
2,966,481	+		HGI48_RS13555	0.56	+1.0
2,966,481	+				+2.2
2,966,482	-		HGI48_RS13555	0.56	-1.6
2,966,490	+		HGI48_RS13555	0.57	-0.8
2,966,490	+		HGI48_RS13555	0.57	-0.1
2,966,491	-		HGI48_RS13555	0.57	+0.7
2,966,491	-				-0.1
2,966,511	+		HGI48_RS13555	0.59	+0.3
2,966,511	+		HGI48_RS13555	0.59	-0.3
2,966,541	+		HGI48_RS13555	0.61	+0.2
2,966,541	+		HGI48_RS13555	0.61	-2.1
2,966,541	+		HGI48_RS13555	0.61	+0.3
2,966,542	-		HGI48_RS13555	0.61	+0.9
2,966,547	+		HGI48_RS13555	0.62	+0.8
2,966,547	+		HGI48_RS13555	0.62	-2.1
2,966,563	+				+3.2
2,966,580	+		HGI48_RS13555	0.64	+0.4
2,966,580	+		HGI48_RS13555	0.64	-1.1
2,966,580	+		HGI48_RS13555	0.64	-1.1
2,966,580	+		HGI48_RS13555	0.64	+1.9
2,966,581	-		HGI48_RS13555	0.65	-1.6
2,966,581	-		HGI48_RS13555	0.65	+1.4
2,966,596	+		HGI48_RS13555	0.66	+0.1
2,966,625	+		HGI48_RS13555	0.68	-1.6
2,966,625	+		HGI48_RS13555	0.68	+0.2
2,966,698	+				+1.7
2,966,698	+		HGI48_RS13555	0.75	-0.1
2,966,699	-		HGI48_RS13555	0.75	-0.1
2,966,699	-		HGI48_RS13555	0.75	-0.9
2,966,699	-		HGI48_RS13555	0.75	+1.1
2,966,699	-		HGI48_RS13555	0.75	+0.4
2,966,704	-		HGI48_RS13555	0.75	+0.6
2,966,781	+		HGI48_RS13555	0.82	+1.1
2,966,782	-		HGI48_RS13555	0.82	+0.0
2,966,811	+		HGI48_RS13555	0.85	+0.3
2,966,811	+		HGI48_RS13555	0.85	+0.4
2,966,812	-		HGI48_RS13555	0.85	+0.8
2,966,812	-				+0.4
2,966,812	-		HGI48_RS13555	0.85	+0.1
2,966,832	+		HGI48_RS13555	0.86	-1.6
2,966,832	+		HGI48_RS13555	0.86	-0.6
2,966,832	+		HGI48_RS13555	0.86	+0.9
2,966,877	+				+0.9
2,966,877	+				-1.1
2,966,877	+				+1.2
2,966,877	+				-0.0
2,966,877	+				-1.8
2,966,877	+				-1.1
2,966,878	-				+1.3
2,966,878	-				+0.8
2,966,878	-				+0.2
2,966,989	+				+0.4
2,967,019	+				+1.7
2,967,020	-				-1.1
2,967,025	+				-1.1
2,967,025	+				-0.1
2,967,026	-				-0.1
2,967,026	-				+0.6
2,967,026	-				+1.3
2,967,026	-				+0.1
2,967,027	+				+0.4
2,967,027	+				-0.1
2,967,028	-				-0.7
2,967,028	-				-0.7
2,967,028	-				-0.4
2,967,028	-				+2.4
2,967,036	-				+0.6
2,967,036	-				-0.1
2,967,036	-				-0.6
2,967,091	+				-1.4
2,967,092	-				+0.0
2,967,096	-				+0.0
2,967,100	+				+0.5
2,967,100	+				+0.4
2,967,150	+				-0.2
2,967,151	-				-2.4
2,967,162	+				-0.6
2,967,162	+				+1.2
2,967,163	-				-0.4
2,967,163	-				+0.8
2,967,163	-				-0.1
2,967,163	-				+0.4
2,967,187	+				+0.1
2,967,268	-				-1.1
2,967,268	-				-0.6
2,967,300	+		HGI48_RS13560	0.13	+1.0
2,967,301	-		HGI48_RS13560	0.13	-1.4
2,967,464	-		HGI48_RS13560	0.39	+1.8
2,967,478	-		HGI48_RS13560	0.41	-2.7
2,967,486	+		HGI48_RS13560	0.42	-0.4
2,967,487	-		HGI48_RS13560	0.42	-0.2
2,967,509	+		HGI48_RS13560	0.46	-2.4
2,967,509	+		HGI48_RS13560	0.46	+1.3
2,967,510	-				-0.6
2,967,510	-		HGI48_RS13560	0.46	-2.1
2,967,547	+		HGI48_RS13560	0.52	-2.0
2,967,548	-		HGI48_RS13560	0.52	-1.6
2,967,685	+		HGI48_RS13560	0.73	-0.4
2,967,685	+		HGI48_RS13560	0.73	+0.0
2,967,685	+		HGI48_RS13560	0.73	+1.0
2,967,685	+		HGI48_RS13560	0.73	+0.8
2,967,685	+		HGI48_RS13560	0.73	-0.6
2,967,686	-		HGI48_RS13560	0.73	-2.1
2,967,686	-		HGI48_RS13560	0.73	-1.4
2,967,689	+		HGI48_RS13560	0.74	-1.1
2,967,689	+		HGI48_RS13560	0.74	-0.3
2,967,689	+		HGI48_RS13560	0.74	-1.9
2,967,689	+		HGI48_RS13560	0.74	-2.1
2,967,689	+		HGI48_RS13560	0.74	-1.9
2,967,690	-		HGI48_RS13560	0.74	+0.4
2,967,690	-		HGI48_RS13560	0.74	-1.7
2,967,749	-		HGI48_RS13560	0.83	-1.6
2,967,807	+				-1.9
2,967,807	+				+0.2
2,967,808	-				-0.6
2,967,869	+				-0.9
2,967,869	+				-1.4
2,967,869	+				-0.6
2,967,869	+				-1.3
2,967,870	-				-2.1
2,967,870	-				-0.6
2,967,870	-				+0.1
2,967,873	+				-0.9
2,967,874	-				-0.4
2,967,874	-				+0.9
2,967,874	-				-0.3
2,967,874	-				-0.6
2,967,874	-				-0.1
2,967,895	-				+0.4
2,967,933	+		HGI48_RS13565	0.17	-0.1
2,967,941	+		HGI48_RS13565	0.19	-1.3
2,967,972	+		HGI48_RS13565	0.27	-2.9
2,967,972	+		HGI48_RS13565	0.27	-0.6
2,967,973	-				+1.0
2,967,973	-		HGI48_RS13565	0.27	-0.2
2,967,973	-		HGI48_RS13565	0.27	+0.7
2,967,973	-				+1.2
2,967,975	+		HGI48_RS13565	0.27	+0.4
2,967,976	-		HGI48_RS13565	0.28	-0.1
2,967,976	-		HGI48_RS13565	0.28	-0.6
2,967,976	-		HGI48_RS13565	0.28	-1.1
2,967,976	-		HGI48_RS13565	0.28	-0.4
2,967,976	-		HGI48_RS13565	0.28	-0.4
2,968,054	+				-0.6
2,968,054	+		HGI48_RS13565	0.48	+0.4
2,968,054	+		HGI48_RS13565	0.48	-0.4
2,968,055	-		HGI48_RS13565	0.48	-0.4
2,968,055	-		HGI48_RS13565	0.48	+1.1
2,968,055	-		HGI48_RS13565	0.48	-0.0
2,968,055	-		HGI48_RS13565	0.48	-1.6
2,968,184	-				-0.6
2,968,186	+		HGI48_RS13565	0.82	+2.1
2,968,201	-		HGI48_RS13565	0.85	+1.3
2,968,201	-		HGI48_RS13565	0.85	-1.1
2,968,201	-		HGI48_RS13565	0.85	+0.8
2,968,257	+				-1.7
2,968,257	+				+0.6
2,968,258	-				+1.7
2,968,261	+				-0.9
2,968,261	+				-1.0
2,968,261	+				+0.2
2,968,261	+				+0.2
2,968,261	+				-2.0
2,968,262	-				+0.3
2,968,262	-				+0.4
2,968,267	+				-0.3
2,968,268	-				-0.7
2,968,270	+				-0.8
2,968,270	+				-0.6
2,968,270	+				+0.4
2,968,270	+				-2.3
2,968,271	-				+0.0
2,968,293	+				+2.8
2,968,293	+				+0.4
2,968,293	+				+0.3
2,968,293	+				+0.2
2,968,293	+				-0.0
2,968,293	+				+0.8
2,968,293	+				-0.4
2,968,294	-				+0.1
2,968,294	-				+1.0
2,968,294	-				-0.6
2,968,295	+				-1.6
2,968,295	+				-2.2
2,968,295	+				-1.3
2,968,296	-				+0.8
2,968,296	-				+1.4
2,968,296	-				+0.2
2,968,297	+				+0.6
2,968,297	+				-0.9
2,968,297	+				+0.1
2,968,297	+				-0.7
2,968,297	+				-0.4
2,968,297	+				-0.3
2,968,297	+				+1.8
2,968,297	+				+0.4
2,968,297	+				+0.8
2,968,297	+				+0.2
2,968,297	+				-0.4
2,968,297	+				+0.7
2,968,297	+				+0.6
2,968,298	-				+1.6
2,968,298	-				-1.6
2,968,298	-				-0.6
2,968,298	-				-0.6
2,968,298	-				-0.4
2,968,298	-				+0.2
2,968,298	-				+0.4
2,968,298	-				-1.1
2,968,298	-				-1.1
2,968,301	+				-1.4
2,968,301	+				+0.0
2,968,302	-				+0.1
2,968,302	-				-0.5
2,968,302	-				+2.0
2,968,302	-				+2.1
2,968,403	-		HGI48_RS13570	0.11	-2.4
2,968,441	+		HGI48_RS13570	0.14	-0.5
2,968,441	+				+0.4
2,968,443	+				-0.6
2,968,444	-		HGI48_RS13570	0.14	-1.0
2,968,456	+		HGI48_RS13570	0.16	-1.1
2,968,502	+		HGI48_RS13570	0.20	-0.3
2,968,509	-				-1.1
2,968,556	+		HGI48_RS13570	0.25	-1.9
2,968,556	+		HGI48_RS13570	0.25	+0.2
2,968,556	+		HGI48_RS13570	0.25	-1.2
2,968,557	-		HGI48_RS13570	0.25	-0.8
2,968,557	-		HGI48_RS13570	0.25	+0.2
2,968,557	-		HGI48_RS13570	0.25	-0.4
2,968,608	-		HGI48_RS13570	0.30	-1.1
2,968,614	+		HGI48_RS13570	0.31	+1.0
2,968,614	+		HGI48_RS13570	0.31	-0.6
2,968,664	-		HGI48_RS13570	0.35	-1.4
2,968,664	-		HGI48_RS13570	0.35	-0.2
2,968,664	-		HGI48_RS13570	0.35	-2.1
2,968,665	+		HGI48_RS13570	0.35	+0.4
2,968,665	+		HGI48_RS13570	0.35	-1.3
2,968,665	+		HGI48_RS13570	0.35	-0.1
2,968,665	+		HGI48_RS13570	0.35	-0.9
2,968,666	-		HGI48_RS13570	0.36	-1.6
2,968,666	-		HGI48_RS13570	0.36	-0.4
2,968,666	-		HGI48_RS13570	0.36	+0.4
2,968,666	-		HGI48_RS13570	0.36	-1.4
2,968,714	+		HGI48_RS13570	0.40	+0.6
2,968,715	-		HGI48_RS13570	0.40	-3.1
2,968,715	-		HGI48_RS13570	0.40	-1.6
2,968,729	+				+1.4
2,968,730	-		HGI48_RS13570	0.42	-1.7
2,968,757	-		HGI48_RS13570	0.44	-1.1
2,968,771	+		HGI48_RS13570	0.45	-0.4
2,968,771	+		HGI48_RS13570	0.45	-1.6
2,968,771	+		HGI48_RS13570	0.45	-2.6
2,968,772	-				-0.1
2,968,772	-		HGI48_RS13570	0.46	-1.6
2,968,828	+				+1.0
2,968,840	+		HGI48_RS13570	0.52	+0.4