Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13160

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS13155 and HGI48_RS13160 are separated by 7 nucleotidesHGI48_RS13160 and HGI48_RS13165 overlap by 11 nucleotides HGI48_RS13155: HGI48_RS13155 - DNA polymerase III subunit delta', at 2,881,721 to 2,882,731 _RS13155 HGI48_RS13160: HGI48_RS13160 - dTMP kinase, at 2,882,739 to 2,883,383 _RS13160 HGI48_RS13165: HGI48_RS13165 - endolytic transglycosylase MltG, at 2,883,373 to 2,884,404 _RS13165 Position (kb) 2882 2883 2884Strain fitness (log2 ratio) -2 -1 0 1at 2883.588 kb on - strand, within HGI48_RS13165at 2883.588 kb on - strandat 2883.592 kb on - strand, within HGI48_RS13165at 2883.592 kb on - strand, within HGI48_RS13165at 2883.592 kb on - strand, within HGI48_RS13165at 2883.597 kb on - strand, within HGI48_RS13165at 2883.642 kb on - strand, within HGI48_RS13165at 2883.642 kb on - strand, within HGI48_RS13165at 2883.642 kb on - strand, within HGI48_RS13165at 2883.642 kb on - strand, within HGI48_RS13165at 2883.642 kb on - strand, within HGI48_RS13165at 2883.642 kb on - strand, within HGI48_RS13165at 2883.642 kb on - strand, within HGI48_RS13165at 2883.660 kb on - strand, within HGI48_RS13165at 2883.660 kb on - strand, within HGI48_RS13165at 2883.660 kb on - strand, within HGI48_RS13165at 2883.912 kb on - strand, within HGI48_RS13165at 2883.912 kb on - strand, within HGI48_RS13165at 2883.912 kb on - strand, within HGI48_RS13165at 2883.912 kb on - strandat 2883.916 kb on - strand, within HGI48_RS13165at 2883.943 kb on - strand, within HGI48_RS13165at 2883.991 kb on - strandat 2884.003 kb on - strand, within HGI48_RS13165at 2884.003 kb on - strand, within HGI48_RS13165at 2884.003 kb on - strandat 2884.014 kb on - strand, within HGI48_RS13165at 2884.222 kb on - strand, within HGI48_RS13165at 2884.288 kb on - strand, within HGI48_RS13165at 2884.331 kb on - strandat 2884.331 kb on - strandat 2884.331 kb on - strandat 2884.375 kb on - strandat 2884.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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2,883,588 - HGI48_RS13165 0.21 -0.3
2,883,588 - -1.2
2,883,592 - HGI48_RS13165 0.21 -0.1
2,883,592 - HGI48_RS13165 0.21 +1.3
2,883,592 - HGI48_RS13165 0.21 -0.6
2,883,597 - HGI48_RS13165 0.22 +0.3
2,883,642 - HGI48_RS13165 0.26 +0.5
2,883,642 - HGI48_RS13165 0.26 +0.7
2,883,642 - HGI48_RS13165 0.26 +0.9
2,883,642 - HGI48_RS13165 0.26 +0.8
2,883,642 - HGI48_RS13165 0.26 -0.6
2,883,642 - HGI48_RS13165 0.26 -0.4
2,883,642 - HGI48_RS13165 0.26 -0.4
2,883,660 - HGI48_RS13165 0.28 -0.8
2,883,660 - HGI48_RS13165 0.28 -0.2
2,883,660 - HGI48_RS13165 0.28 +0.7
2,883,912 - HGI48_RS13165 0.52 +0.4
2,883,912 - HGI48_RS13165 0.52 -0.2
2,883,912 - HGI48_RS13165 0.52 -1.9
2,883,912 - -0.2
2,883,916 - HGI48_RS13165 0.53 -1.4
2,883,943 - HGI48_RS13165 0.55 -1.6
2,883,991 - +1.1
2,884,003 - HGI48_RS13165 0.61 -1.8
2,884,003 - HGI48_RS13165 0.61 +0.8
2,884,003 - -1.2
2,884,014 - HGI48_RS13165 0.62 +0.2
2,884,222 - HGI48_RS13165 0.82 +1.0
2,884,288 - HGI48_RS13165 0.89 -2.2
2,884,331 - +0.1
2,884,331 - -0.1
2,884,331 - +0.6
2,884,375 - +0.8
2,884,375 - -0.3

Or see this region's nucleotide sequence