Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06600

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,395,589	-				+1.5
1,395,592	-				-1.4
1,395,634	+		HGI48_RS06595	0.13	-1.4
1,395,634	+		HGI48_RS06595	0.13	-0.8
1,395,635	-		HGI48_RS06595	0.14	-1.8
1,395,635	-		HGI48_RS06595	0.14	-2.2
1,395,635	-		HGI48_RS06595	0.14	-0.6
1,395,637	+		HGI48_RS06595	0.14	-0.3
1,395,637	+				+0.6
1,395,638	-		HGI48_RS06595	0.14	-0.4
1,395,638	-		HGI48_RS06595	0.14	+0.6
1,395,763	-		HGI48_RS06595	0.26	-0.7
1,395,782	+				+2.2
1,395,783	-		HGI48_RS06595	0.28	-0.8
1,395,783	-		HGI48_RS06595	0.28	+1.4
1,395,783	-		HGI48_RS06595	0.28	+0.7
1,395,783	-		HGI48_RS06595	0.28	-0.4
1,395,907	+		HGI48_RS06595	0.40	-0.4
1,395,907	+				+0.6
1,395,908	-		HGI48_RS06595	0.40	+0.0
1,395,908	-				-1.0
1,395,965	+		HGI48_RS06595	0.45	-0.4
1,395,965	+		HGI48_RS06595	0.45	-0.7
1,396,011	+		HGI48_RS06595	0.49	-1.4
1,396,012	-		HGI48_RS06595	0.50	-1.2
1,396,042	+		HGI48_RS06595	0.52	-0.4
1,396,070	+		HGI48_RS06595	0.55	-0.3
1,396,070	+		HGI48_RS06595	0.55	-0.5
1,396,071	-		HGI48_RS06595	0.55	-1.1
1,396,071	-		HGI48_RS06595	0.55	+0.9
1,396,144	+		HGI48_RS06595	0.62	-2.6
1,396,145	-		HGI48_RS06595	0.62	-0.1
1,396,294	+		HGI48_RS06595	0.77	+0.2
1,396,294	+		HGI48_RS06595	0.77	-2.5
1,396,440	+				-0.0
1,396,440	+				-0.2
1,396,441	-				-1.2
1,396,441	-				-0.2
1,396,525	-				+0.4
1,396,537	+				-1.0
1,396,537	+				-0.1
1,396,537	+				+1.0
1,396,537	+				+0.3
1,396,537	+				+1.2
1,396,537	+				+0.4
1,396,537	+				-0.7
1,396,538	-				-0.7
1,396,538	-				-1.1
1,396,538	-				-1.2
1,396,538	-				+0.6
1,396,538	-				+0.2
1,396,538	-				+1.7
1,396,541	+				-0.2
1,396,541	+				-0.0
1,396,541	+				-0.7
1,396,541	+				+0.5
1,396,541	+				-0.3
1,396,541	+				+0.6
1,396,542	-				-0.4
1,396,542	-				-1.3
1,396,542	-				+0.2
1,396,542	-				-1.1
1,396,557	+				+0.6
1,396,576	+				+0.0
1,396,582	+				+0.1
1,396,582	+				+2.0
1,396,583	-				+0.3
1,396,583	-				+0.3
1,396,585	+				-0.1
1,396,586	-				+1.8
1,396,703	+		HGI48_RS06600	0.19	-0.4
1,396,703	+		HGI48_RS06600	0.19	+0.3
1,396,703	+		HGI48_RS06600	0.19	-0.1
1,396,762	-				+0.6
1,396,763	+				+1.6
1,396,763	+				+0.0
1,396,763	+		HGI48_RS06600	0.28	+0.3
1,396,763	+		HGI48_RS06600	0.28	-0.2
1,396,763	+		HGI48_RS06600	0.28	+0.5
1,396,764	-		HGI48_RS06600	0.28	+0.2
1,396,764	-		HGI48_RS06600	0.28	+0.2
1,396,808	+		HGI48_RS06600	0.34	-0.9
1,396,808	+		HGI48_RS06600	0.34	+0.6
1,396,818	-		HGI48_RS06600	0.35	-0.6
1,396,937	+		HGI48_RS06600	0.52	-1.2
1,396,937	+		HGI48_RS06600	0.52	-0.4
1,396,937	+		HGI48_RS06600	0.52	-0.0
1,396,938	-				+1.0
1,396,938	-		HGI48_RS06600	0.52	+0.2
1,397,064	+		HGI48_RS06600	0.69	-0.4
1,397,065	-		HGI48_RS06600	0.69	-0.2
1,397,065	-		HGI48_RS06600	0.69	+0.4
1,397,098	+		HGI48_RS06600	0.74	-1.0
1,397,098	+		HGI48_RS06600	0.74	-1.1
1,397,098	+		HGI48_RS06600	0.74	+0.6
1,397,099	-		HGI48_RS06600	0.74	-1.0
1,397,102	+		HGI48_RS06600	0.74	-2.0
1,397,102	+		HGI48_RS06600	0.74	-0.4
1,397,102	+		HGI48_RS06600	0.74	+1.7
1,397,102	+		HGI48_RS06600	0.74	-1.0
1,397,102	+		HGI48_RS06600	0.74	-3.0
1,397,103	-		HGI48_RS06600	0.75	-0.1
1,397,103	-		HGI48_RS06600	0.75	+0.6
1,397,103	-		HGI48_RS06600	0.75	+0.4
1,397,103	-		HGI48_RS06600	0.75	+0.1
1,397,103	-		HGI48_RS06600	0.75	+0.4
1,397,103	-		HGI48_RS06600	0.75	-0.6
1,397,140	+		HGI48_RS06600	0.80	-1.4
1,397,141	-		HGI48_RS06600	0.80	+2.1
1,397,174	+		HGI48_RS06600	0.84	+1.3
1,397,174	+		HGI48_RS06600	0.84	-0.5
1,397,175	-		HGI48_RS06600	0.84	-2.0
1,397,175	-		HGI48_RS06600	0.84	+0.6
1,397,192	+		HGI48_RS06600	0.87	-0.6
1,397,192	+				+1.6
1,397,193	-		HGI48_RS06600	0.87	-1.0
1,397,193	-		HGI48_RS06600	0.87	-0.8
1,397,193	-		HGI48_RS06600	0.87	+0.0
1,397,193	-		HGI48_RS06600	0.87	-0.8
1,397,193	-		HGI48_RS06600	0.87	+0.2
1,397,283	+				-0.8
1,397,284	-				-0.1
1,397,285	+				+0.0
1,397,285	+				-1.7
1,397,330	+				+0.6
1,397,331	-				-0.7
1,397,345	+				+0.9
1,397,345	+				+1.2
1,397,346	-				-0.1
1,397,346	-				-0.6
1,397,346	-				-0.1
1,397,346	-				-0.8
1,397,346	-				+0.6
1,397,346	-				+0.0
1,397,353	+				+0.1
1,397,387	+				-0.7
1,397,550	+				+1.2
1,397,551	-				-0.4
1,397,575	+				-2.0
1,397,576	-				+0.4
1,397,576	-				-0.6
1,397,576	-				-1.3
1,397,576	-				+0.3
1,397,577	+				+0.5
1,397,577	+				+0.6
1,397,577	+				+0.0
1,397,577	+				-0.7
1,397,578	-				-0.8
1,397,578	-				-1.2
1,397,578	-				+0.1
1,397,578	-				+0.4
1,397,581	-				+0.0
1,397,581	-				-0.1
1,397,581	-				-1.4
1,397,595	-				+1.0
1,397,627	+				-0.4
1,397,627	+				-0.1
1,397,669	+				+0.2
1,397,670	-				-0.0
1,397,687	+				+1.0
1,397,720	-				+0.6
1,397,727	+				-0.4
1,397,728	-				+0.2
1,397,728	-				-0.1
1,397,728	-				-0.4
1,397,787	+				-0.4
1,397,787	+		HGI48_RS06605	0.10	-1.7
1,397,787	+		HGI48_RS06605	0.10	-1.0
1,397,788	-		HGI48_RS06605	0.10	-0.5
1,397,788	-		HGI48_RS06605	0.10	-0.3
1,397,788	-		HGI48_RS06605	0.10	-1.5
1,397,791	+				+1.6
1,397,791	+		HGI48_RS06605	0.10	+0.2
1,397,792	-		HGI48_RS06605	0.11	+1.4
1,397,792	-		HGI48_RS06605	0.11	+0.3
1,397,894	+		HGI48_RS06605	0.20	-0.0
1,397,894	+		HGI48_RS06605	0.20	-1.0
1,397,894	+		HGI48_RS06605	0.20	-0.2
1,397,894	+		HGI48_RS06605	0.20	+0.2
1,397,895	-				-1.0
1,397,960	+		HGI48_RS06605	0.26	+0.4
1,397,961	-		HGI48_RS06605	0.27	-2.2
1,398,134	+		HGI48_RS06605	0.43	+1.4
1,398,135	-		HGI48_RS06605	0.43	-0.8
1,398,135	-				+0.6
1,398,135	-		HGI48_RS06605	0.43	-1.7
1,398,135	-		HGI48_RS06605	0.43	+0.3
1,398,175	+		HGI48_RS06605	0.47	-1.1
1,398,175	+		HGI48_RS06605	0.47	-1.7
1,398,176	-		HGI48_RS06605	0.47	-0.4
1,398,176	-				-0.4
1,398,178	+		HGI48_RS06605	0.47	-0.7
1,398,179	-		HGI48_RS06605	0.47	+1.7
1,398,179	-		HGI48_RS06605	0.47	-0.7