Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS06275 and HGI48_RS06280 are separated by 7 nucleotides HGI48_RS06280 and HGI48_RS06285 are separated by 98 nucleotides HGI48_RS06285 and HGI48_RS06290 overlap by 4 nucleotides
HGI48_RS06275: HGI48_RS06275 - apolipoprotein N-acyltransferase, at 1,332,491 to 1,334,020
_RS06275
HGI48_RS06280: HGI48_RS06280 - CNNM family magnesium/cobalt transport protein CorC, at 1,334,028 to 1,334,897
_RS06280
HGI48_RS06285: HGI48_RS06285 - rRNA maturation RNase YbeY, at 1,334,996 to 1,335,481
_RS06285
HGI48_RS06290: HGI48_RS06290 - PhoH family protein, at 1,335,478 to 1,336,530
_RS06290
Position (kb) 1334
1335 Strain fitness (log2 ratio) -2
-1
0
1 at 1334.122 kb on + strand, within HGI48_RS06280 at 1334.122 kb on + strand, within HGI48_RS06280 at 1334.272 kb on + strand, within HGI48_RS06280 at 1334.273 kb on - strand at 1334.499 kb on - strand, within HGI48_RS06280 at 1334.667 kb on - strand, within HGI48_RS06280 at 1334.911 kb on - strand at 1334.911 kb on - strand at 1334.998 kb on - strand at 1335.033 kb on + strand at 1335.573 kb on - strand at 1335.573 kb on - strand at 1335.670 kb on - strand, within HGI48_RS06290 at 1335.680 kb on - strand, within HGI48_RS06290 at 1335.849 kb on - strand, within HGI48_RS06290 at 1335.849 kb on - strand, within HGI48_RS06290 at 1335.849 kb on - strand, within HGI48_RS06290 at 1335.849 kb on - strand, within HGI48_RS06290 at 1335.849 kb on - strand, within HGI48_RS06290
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 1,334,122 + HGI48_RS06280 0.11 -0.9 1,334,122 + HGI48_RS06280 0.11 -1.9 1,334,272 + HGI48_RS06280 0.28 +0.6 1,334,273 - +1.2 1,334,499 - HGI48_RS06280 0.54 -1.4 1,334,667 - HGI48_RS06280 0.73 -1.6 1,334,911 - -0.5 1,334,911 - -0.6 1,334,998 - -1.1 1,335,033 + -0.7 1,335,573 - -0.7 1,335,573 - -0.9 1,335,670 - HGI48_RS06290 0.18 +0.5 1,335,680 - HGI48_RS06290 0.19 -0.5 1,335,849 - HGI48_RS06290 0.35 -0.1 1,335,849 - HGI48_RS06290 0.35 +0.6 1,335,849 - HGI48_RS06290 0.35 -1.2 1,335,849 - HGI48_RS06290 0.35 +0.3 1,335,849 - HGI48_RS06290 0.35 -0.1
Or see this region's nucleotide sequence