Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05920

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS05915 and HGI48_RS05920 are separated by 176 nucleotidesHGI48_RS05920 and HGI48_RS05925 are separated by 535 nucleotides HGI48_RS05915: HGI48_RS05915 - ribonucleotide-diphosphate reductase subunit beta, at 1,251,088 to 1,252,218 _RS05915 HGI48_RS05920: HGI48_RS05920 - ribonucleoside-diphosphate reductase subunit alpha, at 1,252,395 to 1,254,683 _RS05920 HGI48_RS05925: HGI48_RS05925 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 1,255,219 to 1,255,938 _RS05925 Position (kb) 1252 1253 1254 1255Strain fitness (log2 ratio) -2 -1 0 1at 1252.397 kb on - strandat 1252.397 kb on - strandat 1252.397 kb on - strandat 1252.397 kb on - strandat 1254.771 kb on - strandat 1254.797 kb on - strandat 1254.801 kb on - strandat 1254.890 kb on - strandat 1254.890 kb on - strandat 1254.897 kb on - strandat 1255.069 kb on + strandat 1255.088 kb on + strandat 1255.101 kb on - strandat 1255.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,252,397 - +0.0
1,252,397 - +0.7
1,252,397 - -0.6
1,252,397 - -0.5
1,254,771 - -0.1
1,254,797 - -2.1
1,254,801 - -0.2
1,254,890 - +0.2
1,254,890 - +0.1
1,254,897 - +1.5
1,255,069 + +0.1
1,255,088 + +0.3
1,255,101 - -0.3
1,255,145 + +0.1

Or see this region's nucleotide sequence