Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04710 and HGI48_RS04715 overlap by 4 nucleotides HGI48_RS04715 and HGI48_RS04720 are separated by 215 nucleotides HGI48_RS04720 and HGI48_RS04725 are separated by 2 nucleotides HGI48_RS04725 and HGI48_RS04730 are separated by 814 nucleotides
HGI48_RS04710: HGI48_RS04710 - DUF1778 domain-containing protein, at 989,158 to 989,451
_RS04710
HGI48_RS04715: HGI48_RS04715 - GNAT family N-acetyltransferase, at 989,448 to 989,942
_RS04715
HGI48_RS04720: HGI48_RS04720 - hypothetical protein, at 990,158 to 990,442
_RS04720
HGI48_RS04725: HGI48_RS04725 - HTH domain-containing protein, at 990,445 to 990,563
_RS04725
HGI48_RS04730: HGI48_RS04730 - hypothetical protein, at 991,378 to 992,454
_RS04730
Position (kb) 990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 989.209 kb on - strand, within HGI48_RS04710 at 989.209 kb on - strand, within HGI48_RS04710 at 989.485 kb on + strand at 989.485 kb on + strand at 989.485 kb on + strand at 989.485 kb on + strand at 989.485 kb on + strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.486 kb on - strand at 989.488 kb on + strand at 989.488 kb on + strand at 989.517 kb on - strand, within HGI48_RS04715 at 989.610 kb on + strand, within HGI48_RS04715 at 989.611 kb on - strand, within HGI48_RS04715 at 989.613 kb on + strand, within HGI48_RS04715 at 989.614 kb on - strand at 989.635 kb on + strand, within HGI48_RS04715 at 989.672 kb on + strand, within HGI48_RS04715 at 989.673 kb on - strand, within HGI48_RS04715 at 989.696 kb on - strand, within HGI48_RS04715 at 989.720 kb on + strand, within HGI48_RS04715 at 989.720 kb on + strand, within HGI48_RS04715 at 989.720 kb on + strand, within HGI48_RS04715 at 989.721 kb on - strand, within HGI48_RS04715 at 989.721 kb on - strand, within HGI48_RS04715 at 989.774 kb on - strand, within HGI48_RS04715 at 989.796 kb on - strand, within HGI48_RS04715 at 989.853 kb on + strand, within HGI48_RS04715 at 989.858 kb on - strand, within HGI48_RS04715 at 989.858 kb on - strand, within HGI48_RS04715 at 989.858 kb on - strand, within HGI48_RS04715 at 989.884 kb on + strand, within HGI48_RS04715 at 989.896 kb on + strand at 989.932 kb on + strand at 989.932 kb on + strand at 989.949 kb on + strand at 989.989 kb on + strand at 989.994 kb on - strand at 989.994 kb on - strand at 990.014 kb on - strand at 990.052 kb on + strand at 990.058 kb on + strand at 990.058 kb on + strand at 990.059 kb on - strand at 990.063 kb on + strand at 990.092 kb on + strand at 990.188 kb on + strand, within HGI48_RS04720 at 990.188 kb on + strand, within HGI48_RS04720 at 990.189 kb on - strand, within HGI48_RS04720 at 990.189 kb on - strand, within HGI48_RS04720 at 990.189 kb on - strand, within HGI48_RS04720 at 990.189 kb on - strand at 990.191 kb on - strand, within HGI48_RS04720 at 990.241 kb on - strand, within HGI48_RS04720 at 990.294 kb on + strand, within HGI48_RS04720 at 990.294 kb on + strand, within HGI48_RS04720 at 990.295 kb on - strand, within HGI48_RS04720 at 990.383 kb on - strand, within HGI48_RS04720 at 990.419 kb on - strand at 990.474 kb on + strand, within HGI48_RS04725 at 990.474 kb on + strand, within HGI48_RS04725 at 990.475 kb on - strand at 990.476 kb on + strand, within HGI48_RS04725 at 990.476 kb on + strand, within HGI48_RS04725 at 990.476 kb on + strand at 990.477 kb on - strand, within HGI48_RS04725 at 990.508 kb on + strand, within HGI48_RS04725 at 990.551 kb on + strand, within HGI48_RS04725 at 990.552 kb on - strand at 990.580 kb on + strand at 990.583 kb on - strand at 990.584 kb on + strand at 990.584 kb on + strand at 990.585 kb on - strand at 990.613 kb on + strand at 990.617 kb on - strand at 990.617 kb on - strand at 990.637 kb on + strand at 990.637 kb on + strand at 990.638 kb on - strand at 990.683 kb on + strand at 990.683 kb on + strand at 990.684 kb on - strand at 990.684 kb on - strand at 990.693 kb on + strand at 990.696 kb on + strand at 990.702 kb on + strand at 990.702 kb on + strand at 990.750 kb on + strand at 990.750 kb on + strand at 990.750 kb on + strand at 990.750 kb on + strand at 990.751 kb on - strand at 990.751 kb on - strand at 990.785 kb on + strand at 990.785 kb on + strand at 990.839 kb on + strand at 990.840 kb on - strand at 990.840 kb on - strand at 990.840 kb on - strand at 990.871 kb on - strand at 990.894 kb on + strand at 990.895 kb on - strand at 990.895 kb on - strand at 990.938 kb on - strand at 991.049 kb on - strand at 991.115 kb on + strand at 991.118 kb on - strand at 991.175 kb on + strand at 991.291 kb on - strand at 991.307 kb on - strand at 991.337 kb on + strand at 991.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 989,209 - HGI48_RS04710 0.17 +0.4 989,209 - HGI48_RS04710 0.17 -0.6 989,485 + -0.5 989,485 + +0.2 989,485 + -2.8 989,485 + +0.5 989,485 + +1.4 989,486 - +0.3 989,486 - -0.0 989,486 - +1.4 989,486 - +0.1 989,486 - -1.7 989,486 - +0.1 989,486 - -0.0 989,486 - -0.2 989,486 - -1.1 989,486 - -1.3 989,486 - -0.5 989,486 - +0.4 989,488 + +0.7 989,488 + +0.0 989,517 - HGI48_RS04715 0.14 -1.9 989,610 + HGI48_RS04715 0.33 +0.7 989,611 - HGI48_RS04715 0.33 +0.7 989,613 + HGI48_RS04715 0.33 -0.3 989,614 - +0.7 989,635 + HGI48_RS04715 0.38 -0.1 989,672 + HGI48_RS04715 0.45 -0.1 989,673 - HGI48_RS04715 0.45 -0.2 989,696 - HGI48_RS04715 0.50 +0.4 989,720 + HGI48_RS04715 0.55 -0.0 989,720 + HGI48_RS04715 0.55 -1.5 989,720 + HGI48_RS04715 0.55 -1.0 989,721 - HGI48_RS04715 0.55 +1.0 989,721 - HGI48_RS04715 0.55 -1.8 989,774 - HGI48_RS04715 0.66 -0.6 989,796 - HGI48_RS04715 0.70 +0.0 989,853 + HGI48_RS04715 0.82 +0.7 989,858 - HGI48_RS04715 0.83 +0.3 989,858 - HGI48_RS04715 0.83 -0.6 989,858 - HGI48_RS04715 0.83 -0.3 989,884 + HGI48_RS04715 0.88 -0.4 989,896 + -0.0 989,932 + -1.3 989,932 + +1.9 989,949 + +0.5 989,989 + -0.6 989,994 - -0.1 989,994 - +0.3 990,014 - -1.6 990,052 + +0.2 990,058 + -2.6 990,058 + -0.9 990,059 - -1.6 990,063 + -1.3 990,092 + -0.0 990,188 + HGI48_RS04720 0.11 -1.1 990,188 + HGI48_RS04720 0.11 -0.1 990,189 - HGI48_RS04720 0.11 -1.5 990,189 - HGI48_RS04720 0.11 -1.1 990,189 - HGI48_RS04720 0.11 -0.1 990,189 - +0.1 990,191 - HGI48_RS04720 0.12 -1.0 990,241 - HGI48_RS04720 0.29 -2.1 990,294 + HGI48_RS04720 0.48 +0.7 990,294 + HGI48_RS04720 0.48 +1.0 990,295 - HGI48_RS04720 0.48 -0.9 990,383 - HGI48_RS04720 0.79 -0.5 990,419 - -0.3 990,474 + HGI48_RS04725 0.24 -0.8 990,474 + HGI48_RS04725 0.24 -2.1 990,475 - -0.9 990,476 + HGI48_RS04725 0.26 -2.5 990,476 + HGI48_RS04725 0.26 +0.2 990,476 + +0.1 990,477 - HGI48_RS04725 0.27 +0.1 990,508 + HGI48_RS04725 0.53 +1.2 990,551 + HGI48_RS04725 0.89 +0.3 990,552 - +0.8 990,580 + -2.3 990,583 - -2.3 990,584 + -0.0 990,584 + +0.7 990,585 - +2.1 990,613 + -0.6 990,617 - -1.6 990,617 - +2.0 990,637 + -0.9 990,637 + -1.5 990,638 - +0.4 990,683 + +0.7 990,683 + -0.2 990,684 - -0.5 990,684 - +1.7 990,693 + +1.6 990,696 + -0.7 990,702 + -1.5 990,702 + -2.6 990,750 + -1.3 990,750 + -0.2 990,750 + +0.8 990,750 + +0.5 990,751 - -0.3 990,751 - -0.2 990,785 + -0.2 990,785 + -0.4 990,839 + -1.9 990,840 - +1.0 990,840 - +0.8 990,840 - +1.1 990,871 - +0.4 990,894 + +1.3 990,895 - -0.1 990,895 - +1.7 990,938 - +1.3 991,049 - -0.7 991,115 + -2.3 991,118 - -0.2 991,175 + -0.3 991,291 - -1.5 991,307 - -0.0 991,337 + -1.6 991,377 + -0.0
Or see this region's nucleotide sequence