Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04325

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04320 and HGI48_RS04325 are separated by 83 nucleotidesHGI48_RS04325 and HGI48_RS04330 are separated by 172 nucleotides HGI48_RS04320: HGI48_RS04320 - DNA repair protein RecN, at 903,852 to 905,513 _RS04320 HGI48_RS04325: HGI48_RS04325 - NAD(+) kinase, at 905,597 to 906,475 _RS04325 HGI48_RS04330: HGI48_RS04330 - nucleotide exchange factor GrpE, at 906,648 to 907,235 _RS04330 Position (kb) 905 906 907Strain fitness (log2 ratio) -2 -1 0 1at 904.618 kb on + strand, within HGI48_RS04320at 904.619 kb on - strand, within HGI48_RS04320at 904.873 kb on + strand, within HGI48_RS04320at 904.874 kb on - strand, within HGI48_RS04320at 904.940 kb on - strand, within HGI48_RS04320at 905.049 kb on + strand, within HGI48_RS04320at 905.049 kb on + strandat 905.050 kb on - strandat 905.050 kb on - strand, within HGI48_RS04320at 905.068 kb on + strand, within HGI48_RS04320at 905.104 kb on - strand, within HGI48_RS04320at 905.399 kb on + strandat 905.517 kb on - strandat 905.526 kb on + strandat 905.531 kb on - strandat 905.546 kb on + strandat 905.550 kb on + strandat 905.551 kb on - strandat 905.573 kb on - strandat 905.578 kb on - strandat 905.592 kb on + strandat 906.487 kb on - strandat 906.487 kb on - strandat 906.487 kb on - strandat 906.487 kb on - strandat 906.543 kb on + strandat 906.543 kb on + strandat 906.544 kb on - strandat 906.544 kb on - strandat 906.544 kb on - strandat 906.544 kb on - strandat 906.544 kb on - strandat 906.544 kb on - strandat 906.544 kb on - strandat 906.614 kb on + strandat 907.233 kb on + strandat 907.233 kb on + strandat 907.233 kb on + strandat 907.233 kb on + strandat 907.234 kb on - strandat 907.234 kb on - strandat 907.329 kb on + strandat 907.329 kb on + strandat 907.347 kb on + strandat 907.374 kb on + strandat 907.375 kb on - strandat 907.408 kb on + strandat 907.409 kb on - strandat 907.412 kb on + strandat 907.412 kb on + strandat 907.412 kb on + strandat 907.412 kb on + strandat 907.426 kb on + strandat 907.427 kb on - strandat 907.431 kb on - strandat 907.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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904,618 + HGI48_RS04320 0.46 +0.5
904,619 - HGI48_RS04320 0.46 -1.6
904,873 + HGI48_RS04320 0.61 -0.9
904,874 - HGI48_RS04320 0.61 +0.4
904,940 - HGI48_RS04320 0.65 +0.7
905,049 + HGI48_RS04320 0.72 +0.9
905,049 + +1.3
905,050 - -0.3
905,050 - HGI48_RS04320 0.72 -1.9
905,068 + HGI48_RS04320 0.73 -1.1
905,104 - HGI48_RS04320 0.75 -0.3
905,399 + +0.0
905,517 - +0.4
905,526 + +0.7
905,531 - -0.7
905,546 + -0.4
905,550 + -2.5
905,551 - -1.0
905,573 - -0.3
905,578 - -0.4
905,592 + -1.3
906,487 - -0.3
906,487 - -0.8
906,487 - -0.0
906,487 - +1.0
906,543 + -1.3
906,543 + -0.6
906,544 - -0.0
906,544 - -0.6
906,544 - -0.5
906,544 - -1.3
906,544 - -1.6
906,544 - +0.1
906,544 - -1.3
906,614 + +0.3
907,233 + -0.3
907,233 + -0.8
907,233 + -0.0
907,233 + +0.1
907,234 - +0.7
907,234 - +0.4
907,329 + -0.9
907,329 + +1.0
907,347 + -1.0
907,374 + +0.8
907,375 - -1.2
907,408 + +0.5
907,409 - +0.7
907,412 + +0.2
907,412 + -0.3
907,412 + -0.0
907,412 + +0.7
907,426 + +1.1
907,427 - +0.7
907,431 - +0.4
907,431 - +0.1

Or see this region's nucleotide sequence