Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04305 and HGI48_RS04310 overlap by 8 nucleotides HGI48_RS04310 and HGI48_RS04315 are separated by 58 nucleotides HGI48_RS04315 and HGI48_RS04320 are separated by 111 nucleotides HGI48_RS04320 and HGI48_RS04325 are separated by 83 nucleotides
HGI48_RS04305: HGI48_RS04305 - type II toxin-antitoxin system RatA family toxin, at 902,617 to 903,051
_RS04305
HGI48_RS04310: HGI48_RS04310 - RnfH family protein, at 903,044 to 903,337
_RS04310
HGI48_RS04315: HGI48_RS04315 - outer membrane protein assembly factor BamE, at 903,396 to 903,740
_RS04315
HGI48_RS04320: HGI48_RS04320 - DNA repair protein RecN, at 903,852 to 905,513
_RS04320
HGI48_RS04325: HGI48_RS04325 - NAD(+) kinase, at 905,597 to 906,475
_RS04325
Position (kb) 903
904
905
906 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 902.916 kb on + strand, within HGI48_RS04305 at 902.916 kb on + strand, within HGI48_RS04305 at 902.916 kb on + strand, within HGI48_RS04305 at 902.917 kb on - strand at 903.040 kb on + strand at 903.041 kb on - strand at 903.041 kb on - strand at 903.041 kb on - strand at 903.140 kb on - strand, within HGI48_RS04310 at 903.295 kb on - strand at 903.397 kb on + strand at 903.397 kb on + strand at 903.398 kb on - strand at 903.398 kb on - strand at 903.514 kb on + strand, within HGI48_RS04315 at 903.514 kb on + strand, within HGI48_RS04315 at 903.515 kb on - strand, within HGI48_RS04315 at 903.515 kb on - strand, within HGI48_RS04315 at 903.517 kb on + strand, within HGI48_RS04315 at 903.517 kb on + strand, within HGI48_RS04315 at 903.517 kb on + strand, within HGI48_RS04315 at 903.518 kb on - strand, within HGI48_RS04315 at 903.568 kb on + strand, within HGI48_RS04315 at 903.568 kb on + strand, within HGI48_RS04315 at 903.568 kb on + strand, within HGI48_RS04315 at 903.568 kb on + strand at 903.569 kb on - strand, within HGI48_RS04315 at 903.609 kb on + strand, within HGI48_RS04315 at 903.628 kb on + strand, within HGI48_RS04315 at 903.629 kb on - strand, within HGI48_RS04315 at 903.629 kb on - strand, within HGI48_RS04315 at 903.660 kb on + strand, within HGI48_RS04315 at 903.661 kb on - strand, within HGI48_RS04315 at 903.661 kb on - strand, within HGI48_RS04315 at 903.695 kb on + strand, within HGI48_RS04315 at 903.695 kb on + strand, within HGI48_RS04315 at 903.695 kb on + strand, within HGI48_RS04315 at 903.696 kb on - strand, within HGI48_RS04315 at 903.732 kb on - strand at 903.741 kb on - strand at 903.747 kb on + strand at 903.747 kb on + strand at 903.747 kb on + strand at 903.748 kb on - strand at 903.764 kb on + strand at 903.764 kb on + strand at 903.764 kb on + strand at 903.764 kb on + strand at 903.765 kb on - strand at 903.765 kb on - strand at 903.778 kb on + strand at 903.778 kb on + strand at 903.778 kb on + strand at 903.778 kb on + strand at 903.778 kb on + strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.781 kb on + strand at 903.781 kb on + strand at 903.781 kb on + strand at 903.781 kb on + strand at 903.782 kb on - strand at 903.782 kb on - strand at 903.782 kb on - strand at 903.782 kb on - strand at 903.818 kb on + strand at 903.853 kb on + strand at 903.853 kb on + strand at 903.854 kb on - strand at 903.995 kb on + strand at 904.006 kb on + strand at 904.007 kb on - strand at 904.064 kb on + strand, within HGI48_RS04320 at 904.064 kb on + strand, within HGI48_RS04320 at 904.176 kb on - strand at 904.510 kb on - strand, within HGI48_RS04320 at 904.510 kb on - strand, within HGI48_RS04320 at 904.527 kb on + strand, within HGI48_RS04320 at 904.527 kb on + strand, within HGI48_RS04320 at 904.528 kb on - strand, within HGI48_RS04320 at 904.528 kb on - strand, within HGI48_RS04320 at 904.528 kb on - strand, within HGI48_RS04320 at 904.537 kb on + strand, within HGI48_RS04320 at 904.537 kb on + strand at 904.618 kb on + strand, within HGI48_RS04320 at 904.619 kb on - strand, within HGI48_RS04320 at 904.873 kb on + strand, within HGI48_RS04320 at 904.874 kb on - strand, within HGI48_RS04320 at 904.940 kb on - strand, within HGI48_RS04320 at 905.049 kb on + strand, within HGI48_RS04320 at 905.049 kb on + strand at 905.050 kb on - strand at 905.050 kb on - strand, within HGI48_RS04320 at 905.068 kb on + strand, within HGI48_RS04320 at 905.104 kb on - strand, within HGI48_RS04320 at 905.399 kb on + strand at 905.517 kb on - strand at 905.526 kb on + strand at 905.531 kb on - strand at 905.546 kb on + strand at 905.550 kb on + strand at 905.551 kb on - strand at 905.573 kb on - strand at 905.578 kb on - strand at 905.592 kb on + strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 902,916 + HGI48_RS04305 0.69 -1.3 902,916 + HGI48_RS04305 0.69 -1.9 902,916 + HGI48_RS04305 0.69 -0.9 902,917 - +1.7 903,040 + -0.3 903,041 - +0.7 903,041 - +0.2 903,041 - -0.3 903,140 - HGI48_RS04310 0.33 -0.0 903,295 - +1.1 903,397 + -0.1 903,397 + -1.1 903,398 - -0.3 903,398 - +1.0 903,514 + HGI48_RS04315 0.34 +0.4 903,514 + HGI48_RS04315 0.34 -1.1 903,515 - HGI48_RS04315 0.34 -0.7 903,515 - HGI48_RS04315 0.34 -0.9 903,517 + HGI48_RS04315 0.35 -1.6 903,517 + HGI48_RS04315 0.35 -1.9 903,517 + HGI48_RS04315 0.35 -2.6 903,518 - HGI48_RS04315 0.35 -0.0 903,568 + HGI48_RS04315 0.50 +1.8 903,568 + HGI48_RS04315 0.50 -1.9 903,568 + HGI48_RS04315 0.50 -2.2 903,568 + -0.9 903,569 - HGI48_RS04315 0.50 -0.5 903,609 + HGI48_RS04315 0.62 -1.6 903,628 + HGI48_RS04315 0.67 -0.9 903,629 - HGI48_RS04315 0.68 +0.3 903,629 - HGI48_RS04315 0.68 -0.3 903,660 + HGI48_RS04315 0.77 -1.4 903,661 - HGI48_RS04315 0.77 -2.5 903,661 - HGI48_RS04315 0.77 -0.6 903,695 + HGI48_RS04315 0.87 -1.3 903,695 + HGI48_RS04315 0.87 -0.6 903,695 + HGI48_RS04315 0.87 -0.6 903,696 - HGI48_RS04315 0.87 -1.6 903,732 - -2.1 903,741 - +0.1 903,747 + -0.0 903,747 + -3.9 903,747 + -1.5 903,748 - -0.7 903,764 + -1.4 903,764 + -1.9 903,764 + -0.3 903,764 + +1.0 903,765 - +1.1 903,765 - +0.1 903,778 + +0.7 903,778 + -1.3 903,778 + -1.1 903,778 + -0.9 903,778 + -0.8 903,779 - -0.6 903,779 - -0.1 903,779 - +1.4 903,779 - -0.7 903,779 - -0.5 903,779 - +0.5 903,781 + -1.0 903,781 + -2.1 903,781 + -1.6 903,781 + +0.1 903,782 - -0.4 903,782 - -1.3 903,782 - +0.4 903,782 - -2.1 903,818 + +0.0 903,853 + -0.3 903,853 + -0.3 903,854 - -0.9 903,995 + -0.8 904,006 + +0.1 904,007 - -0.9 904,064 + HGI48_RS04320 0.13 -0.3 904,064 + HGI48_RS04320 0.13 -1.0 904,176 - +2.1 904,510 - HGI48_RS04320 0.40 -2.7 904,510 - HGI48_RS04320 0.40 -1.9 904,527 + HGI48_RS04320 0.41 +0.5 904,527 + HGI48_RS04320 0.41 -1.9 904,528 - HGI48_RS04320 0.41 -1.6 904,528 - HGI48_RS04320 0.41 -0.7 904,528 - HGI48_RS04320 0.41 +1.7 904,537 + HGI48_RS04320 0.41 +0.7 904,537 + +1.3 904,618 + HGI48_RS04320 0.46 +0.5 904,619 - HGI48_RS04320 0.46 -1.6 904,873 + HGI48_RS04320 0.61 -0.9 904,874 - HGI48_RS04320 0.61 +0.4 904,940 - HGI48_RS04320 0.65 +0.7 905,049 + HGI48_RS04320 0.72 +0.9 905,049 + +1.3 905,050 - -0.3 905,050 - HGI48_RS04320 0.72 -1.9 905,068 + HGI48_RS04320 0.73 -1.1 905,104 - HGI48_RS04320 0.75 -0.3 905,399 + +0.0 905,517 - +0.4 905,526 + +0.7 905,531 - -0.7 905,546 + -0.4 905,550 + -2.5 905,551 - -1.0 905,573 - -0.3 905,578 - -0.4 905,592 + -1.3 906,487 - -0.3 906,487 - -0.8 906,487 - -0.0 906,487 - +1.0
Or see this region's nucleotide sequence