Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04130 and HGI48_RS04135 are separated by 139 nucleotides HGI48_RS04135 and HGI48_RS04140 are separated by 2 nucleotides HGI48_RS04140 and HGI48_RS04145 are separated by 66 nucleotides HGI48_RS04145 and HGI48_RS04150 are separated by 188 nucleotides
HGI48_RS04130: HGI48_RS04130 - transposase, at 874,756 to 875,326
_RS04130
HGI48_RS04135: HGI48_RS04135 - carboxymuconolactone decarboxylase family protein, at 875,466 to 875,657
_RS04135
HGI48_RS04140: HGI48_RS04140 - IS3 family transposase, at 875,660 to 876,811
_RS04140
HGI48_RS04145: HGI48_RS04145 - carboxymuconolactone decarboxylase family protein, at 876,878 to 877,060
_RS04145
HGI48_RS04150: HGI48_RS04150 - alkene reductase, at 877,249 to 878,361
_RS04150
Position (kb) 875
876
877 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 874.688 kb on + strand at 874.688 kb on + strand at 874.713 kb on - strand at 874.713 kb on - strand at 874.713 kb on - strand at 874.765 kb on - strand at 874.765 kb on - strand at 874.847 kb on + strand, within HGI48_RS04130 at 874.885 kb on + strand, within HGI48_RS04130 at 874.885 kb on + strand, within HGI48_RS04130 at 874.885 kb on + strand, within HGI48_RS04130 at 874.885 kb on + strand, within HGI48_RS04130 at 874.886 kb on - strand, within HGI48_RS04130 at 874.892 kb on + strand, within HGI48_RS04130 at 874.893 kb on - strand, within HGI48_RS04130 at 874.893 kb on - strand, within HGI48_RS04130 at 874.893 kb on - strand, within HGI48_RS04130 at 874.925 kb on + strand, within HGI48_RS04130 at 874.925 kb on + strand, within HGI48_RS04130 at 874.925 kb on + strand, within HGI48_RS04130 at 874.925 kb on + strand, within HGI48_RS04130 at 874.925 kb on + strand, within HGI48_RS04130 at 874.926 kb on - strand, within HGI48_RS04130 at 874.926 kb on - strand, within HGI48_RS04130 at 875.000 kb on + strand, within HGI48_RS04130 at 875.100 kb on - strand, within HGI48_RS04130 at 875.134 kb on - strand, within HGI48_RS04130 at 875.134 kb on - strand, within HGI48_RS04130 at 875.134 kb on - strand, within HGI48_RS04130 at 875.218 kb on + strand, within HGI48_RS04130 at 875.218 kb on + strand, within HGI48_RS04130 at 875.219 kb on - strand, within HGI48_RS04130 at 875.286 kb on + strand at 875.286 kb on + strand at 875.286 kb on + strand at 875.287 kb on - strand at 875.287 kb on - strand at 875.287 kb on - strand at 875.287 kb on - strand at 875.383 kb on + strand at 875.384 kb on - strand at 875.389 kb on + strand at 875.406 kb on + strand at 875.406 kb on + strand at 875.406 kb on + strand at 875.407 kb on - strand at 875.407 kb on - strand at 875.407 kb on - strand at 875.407 kb on - strand at 875.425 kb on - strand at 875.431 kb on + strand at 875.442 kb on + strand at 875.442 kb on + strand at 875.462 kb on + strand at 875.467 kb on + strand at 875.468 kb on - strand at 875.468 kb on - strand at 875.472 kb on - strand at 875.472 kb on - strand at 875.472 kb on - strand at 875.474 kb on + strand at 875.512 kb on + strand, within HGI48_RS04135 at 875.513 kb on - strand, within HGI48_RS04135 at 875.513 kb on - strand, within HGI48_RS04135 at 875.513 kb on - strand, within HGI48_RS04135 at 875.517 kb on + strand, within HGI48_RS04135 at 875.518 kb on - strand, within HGI48_RS04135 at 875.540 kb on + strand, within HGI48_RS04135 at 875.593 kb on - strand, within HGI48_RS04135 at 875.593 kb on - strand, within HGI48_RS04135 at 875.606 kb on + strand, within HGI48_RS04135 at 875.616 kb on + strand, within HGI48_RS04135 at 875.617 kb on - strand, within HGI48_RS04135 at 875.617 kb on - strand, within HGI48_RS04135 at 875.617 kb on - strand at 875.637 kb on - strand, within HGI48_RS04135 at 875.645 kb on - strand at 875.645 kb on - strand at 875.645 kb on - strand at 875.645 kb on - strand at 877.000 kb on + strand, within HGI48_RS04145 at 877.074 kb on + strand at 877.116 kb on + strand at 877.144 kb on - strand at 877.375 kb on + strand, within HGI48_RS04150 at 877.375 kb on + strand, within HGI48_RS04150 at 877.376 kb on - strand at 877.376 kb on - strand, within HGI48_RS04150 at 877.409 kb on - strand at 877.549 kb on - strand, within HGI48_RS04150 at 877.600 kb on - strand, within HGI48_RS04150 at 877.602 kb on - strand at 877.638 kb on + strand, within HGI48_RS04150 at 877.639 kb on - strand, within HGI48_RS04150 at 877.639 kb on - strand, within HGI48_RS04150 at 877.754 kb on + strand at 877.755 kb on - strand, within HGI48_RS04150 at 877.755 kb on - strand at 877.757 kb on - strand, within HGI48_RS04150 at 877.757 kb on - strand at 877.758 kb on + strand, within HGI48_RS04150 at 877.758 kb on + strand, within HGI48_RS04150 at 877.759 kb on - strand, within HGI48_RS04150 at 877.767 kb on + strand, within HGI48_RS04150 at 877.767 kb on + strand, within HGI48_RS04150 at 877.768 kb on - strand at 877.773 kb on + strand, within HGI48_RS04150 at 877.805 kb on + strand, within HGI48_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 874,688 + -0.6 874,688 + -0.1 874,713 - -0.3 874,713 - -0.8 874,713 - -1.3 874,765 - -0.8 874,765 - -1.6 874,847 + HGI48_RS04130 0.16 -1.1 874,885 + HGI48_RS04130 0.23 +0.7 874,885 + HGI48_RS04130 0.23 +0.6 874,885 + HGI48_RS04130 0.23 -0.4 874,885 + HGI48_RS04130 0.23 -0.8 874,886 - HGI48_RS04130 0.23 -1.0 874,892 + HGI48_RS04130 0.24 +0.1 874,893 - HGI48_RS04130 0.24 -0.4 874,893 - HGI48_RS04130 0.24 +0.5 874,893 - HGI48_RS04130 0.24 -0.3 874,925 + HGI48_RS04130 0.30 +0.5 874,925 + HGI48_RS04130 0.30 -0.3 874,925 + HGI48_RS04130 0.30 +1.5 874,925 + HGI48_RS04130 0.30 -0.1 874,925 + HGI48_RS04130 0.30 +0.4 874,926 - HGI48_RS04130 0.30 -0.4 874,926 - HGI48_RS04130 0.30 +0.4 875,000 + HGI48_RS04130 0.43 +2.0 875,100 - HGI48_RS04130 0.60 +1.0 875,134 - HGI48_RS04130 0.66 -0.1 875,134 - HGI48_RS04130 0.66 +0.7 875,134 - HGI48_RS04130 0.66 -0.0 875,218 + HGI48_RS04130 0.81 -1.0 875,218 + HGI48_RS04130 0.81 -1.6 875,219 - HGI48_RS04130 0.81 -1.8 875,286 + -0.5 875,286 + -0.7 875,286 + +0.5 875,287 - +0.2 875,287 - +0.3 875,287 - +0.2 875,287 - -0.3 875,383 + -1.6 875,384 - +1.2 875,389 + +1.4 875,406 + +0.2 875,406 + -1.1 875,406 + +1.1 875,407 - -0.6 875,407 - +0.1 875,407 - +0.3 875,407 - -0.4 875,425 - -0.0 875,431 + +0.7 875,442 + +1.4 875,442 + +0.7 875,462 + +0.7 875,467 + +1.1 875,468 - -0.6 875,468 - +0.7 875,472 - -0.9 875,472 - +0.6 875,472 - -0.0 875,474 + +0.7 875,512 + HGI48_RS04135 0.24 +0.7 875,513 - HGI48_RS04135 0.24 -0.3 875,513 - HGI48_RS04135 0.24 -0.4 875,513 - HGI48_RS04135 0.24 -0.6 875,517 + HGI48_RS04135 0.27 -1.3 875,518 - HGI48_RS04135 0.27 -0.6 875,540 + HGI48_RS04135 0.39 +1.0 875,593 - HGI48_RS04135 0.66 +0.0 875,593 - HGI48_RS04135 0.66 -0.3 875,606 + HGI48_RS04135 0.73 +4.8 875,616 + HGI48_RS04135 0.78 -0.4 875,617 - HGI48_RS04135 0.79 -0.1 875,617 - HGI48_RS04135 0.79 -1.9 875,617 - +1.5 875,637 - HGI48_RS04135 0.89 +0.4 875,645 - +2.0 875,645 - -1.1 875,645 - +1.7 875,645 - +0.5 877,000 + HGI48_RS04145 0.67 -2.3 877,074 + -0.6 877,116 + -0.8 877,144 - +0.1 877,375 + HGI48_RS04150 0.11 +0.4 877,375 + HGI48_RS04150 0.11 -1.5 877,376 - -0.9 877,376 - HGI48_RS04150 0.11 -0.3 877,409 - +2.1 877,549 - HGI48_RS04150 0.27 -0.8 877,600 - HGI48_RS04150 0.32 -0.6 877,602 - -0.9 877,638 + HGI48_RS04150 0.35 -2.4 877,639 - HGI48_RS04150 0.35 -0.3 877,639 - HGI48_RS04150 0.35 -0.4 877,754 + +0.7 877,755 - HGI48_RS04150 0.45 -0.6 877,755 - +0.1 877,757 - HGI48_RS04150 0.46 -0.3 877,757 - +0.1 877,758 + HGI48_RS04150 0.46 -0.3 877,758 + HGI48_RS04150 0.46 -0.6 877,759 - HGI48_RS04150 0.46 -0.1 877,767 + HGI48_RS04150 0.47 +0.3 877,767 + HGI48_RS04150 0.47 -1.4 877,768 - +0.1 877,773 + HGI48_RS04150 0.47 -1.1 877,805 + HGI48_RS04150 0.50 -1.6
Or see this region's nucleotide sequence