Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03945

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03935 and HGI48_RS03940 are separated by 233 nucleotidesHGI48_RS03940 and HGI48_RS03945 overlap by 4 nucleotidesHGI48_RS03945 and HGI48_RS03950 are separated by 25 nucleotidesHGI48_RS03950 and HGI48_RS03955 are separated by 57 nucleotides HGI48_RS03935: HGI48_RS03935 - conjugal transfer protein TraG, at 834,825 to 836,822 _RS03935 HGI48_RS03940: HGI48_RS03940 - EexN family lipoprotein, at 837,056 to 837,331 _RS03940 HGI48_RS03945: HGI48_RS03945 - LysR family transcriptional regulator, at 837,328 to 838,272 _RS03945 HGI48_RS03950: HGI48_RS03950 - DUF2867 domain-containing protein, at 838,298 to 838,834 _RS03950 HGI48_RS03955: HGI48_RS03955 - arginase family protein, at 838,892 to 839,770 _RS03955 Position (kb) 837 838 839Strain fitness (log2 ratio) -2 -1 0 1at 836.411 kb on - strandat 836.503 kb on + strand, within HGI48_RS03935at 836.503 kb on + strand, within HGI48_RS03935at 836.504 kb on - strand, within HGI48_RS03935at 836.579 kb on + strand, within HGI48_RS03935at 836.668 kb on + strandat 836.668 kb on + strandat 836.669 kb on - strandat 836.712 kb on + strandat 836.712 kb on + strandat 836.712 kb on + strandat 836.713 kb on - strandat 836.713 kb on - strandat 836.713 kb on - strandat 836.713 kb on - strandat 836.713 kb on - strandat 836.713 kb on - strandat 836.939 kb on + strandat 836.983 kb on - strandat 837.050 kb on + strandat 837.087 kb on + strand, within HGI48_RS03940at 837.087 kb on + strand, within HGI48_RS03940at 837.087 kb on + strand, within HGI48_RS03940at 837.108 kb on + strandat 837.108 kb on + strand, within HGI48_RS03940at 837.464 kb on + strand, within HGI48_RS03945at 837.464 kb on + strand, within HGI48_RS03945at 837.464 kb on + strand, within HGI48_RS03945at 837.464 kb on + strand, within HGI48_RS03945at 837.464 kb on + strand, within HGI48_RS03945at 837.464 kb on + strand, within HGI48_RS03945at 837.464 kb on + strand, within HGI48_RS03945at 837.464 kb on + strandat 837.464 kb on + strandat 837.465 kb on - strand, within HGI48_RS03945at 837.465 kb on - strandat 837.465 kb on - strand, within HGI48_RS03945at 837.465 kb on - strand, within HGI48_RS03945at 837.477 kb on + strand, within HGI48_RS03945at 837.477 kb on + strand, within HGI48_RS03945at 837.477 kb on + strand, within HGI48_RS03945at 837.477 kb on + strand, within HGI48_RS03945at 837.478 kb on - strand, within HGI48_RS03945at 837.478 kb on - strand, within HGI48_RS03945at 837.478 kb on - strandat 837.478 kb on - strand, within HGI48_RS03945at 837.478 kb on - strand, within HGI48_RS03945at 837.478 kb on - strand, within HGI48_RS03945at 837.478 kb on - strand, within HGI48_RS03945at 837.478 kb on - strand, within HGI48_RS03945at 837.516 kb on + strandat 837.542 kb on - strand, within HGI48_RS03945at 837.694 kb on + strand, within HGI48_RS03945at 837.694 kb on + strand, within HGI48_RS03945at 837.694 kb on + strand, within HGI48_RS03945at 837.694 kb on + strand, within HGI48_RS03945at 837.695 kb on - strand, within HGI48_RS03945at 837.793 kb on + strand, within HGI48_RS03945at 837.794 kb on - strand, within HGI48_RS03945at 837.845 kb on - strand, within HGI48_RS03945at 837.845 kb on - strand, within HGI48_RS03945at 837.845 kb on - strandat 837.851 kb on + strand, within HGI48_RS03945at 837.851 kb on + strand, within HGI48_RS03945at 837.852 kb on - strand, within HGI48_RS03945at 838.132 kb on + strand, within HGI48_RS03945at 838.132 kb on + strand, within HGI48_RS03945at 838.132 kb on + strand, within HGI48_RS03945at 838.133 kb on - strand, within HGI48_RS03945at 838.133 kb on - strand, within HGI48_RS03945at 838.133 kb on - strandat 838.133 kb on - strand, within HGI48_RS03945at 838.264 kb on + strandat 838.264 kb on + strandat 838.264 kb on + strandat 838.264 kb on + strandat 838.264 kb on + strandat 838.264 kb on + strandat 838.264 kb on + strandat 838.265 kb on - strandat 838.265 kb on - strandat 838.265 kb on - strandat 838.265 kb on - strandat 838.273 kb on + strandat 838.274 kb on - strandat 838.299 kb on + strandat 838.380 kb on + strand, within HGI48_RS03950at 838.380 kb on + strand, within HGI48_RS03950at 838.380 kb on + strand, within HGI48_RS03950at 838.380 kb on + strand, within HGI48_RS03950at 838.381 kb on - strand, within HGI48_RS03950at 838.381 kb on - strandat 838.381 kb on - strand, within HGI48_RS03950at 838.381 kb on - strand, within HGI48_RS03950at 838.381 kb on - strand, within HGI48_RS03950at 838.381 kb on - strand, within HGI48_RS03950at 838.381 kb on - strand, within HGI48_RS03950at 838.381 kb on - strandat 838.430 kb on + strand, within HGI48_RS03950at 838.430 kb on + strand, within HGI48_RS03950at 838.430 kb on + strand, within HGI48_RS03950at 838.431 kb on - strand, within HGI48_RS03950at 838.431 kb on - strand, within HGI48_RS03950at 838.431 kb on - strand, within HGI48_RS03950at 838.431 kb on - strand, within HGI48_RS03950at 838.431 kb on - strand, within HGI48_RS03950at 838.431 kb on - strand, within HGI48_RS03950at 838.431 kb on - strand, within HGI48_RS03950at 838.431 kb on - strand, within HGI48_RS03950at 838.437 kb on + strand, within HGI48_RS03950at 838.437 kb on + strand, within HGI48_RS03950at 838.437 kb on + strand, within HGI48_RS03950at 838.438 kb on - strand, within HGI48_RS03950at 838.569 kb on + strand, within HGI48_RS03950at 838.570 kb on - strand, within HGI48_RS03950at 838.742 kb on - strand, within HGI48_RS03950at 838.846 kb on + strandat 838.847 kb on - strandat 838.847 kb on - strandat 838.875 kb on - strandat 838.875 kb on - strandat 838.875 kb on - strandat 838.985 kb on - strand, within HGI48_RS03955at 839.095 kb on - strand, within HGI48_RS03955at 839.228 kb on + strand, within HGI48_RS03955at 839.228 kb on + strand, within HGI48_RS03955at 839.228 kb on + strand, within HGI48_RS03955at 839.228 kb on + strand, within HGI48_RS03955at 839.229 kb on - strand, within HGI48_RS03955at 839.229 kb on - strand, within HGI48_RS03955

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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836,411 - +1.5
836,503 + HGI48_RS03935 0.84 -0.2
836,503 + HGI48_RS03935 0.84 -1.2
836,504 - HGI48_RS03935 0.84 +0.3
836,579 + HGI48_RS03935 0.88 -2.1
836,668 + -0.1
836,668 + -1.4
836,669 - -1.3
836,712 + -0.1
836,712 + -0.4
836,712 + +0.7
836,713 - -0.6
836,713 - -0.1
836,713 - +0.2
836,713 - +0.4
836,713 - -2.1
836,713 - +0.3
836,939 + +0.3
836,983 - -0.3
837,050 + -0.1
837,087 + HGI48_RS03940 0.11 -1.3
837,087 + HGI48_RS03940 0.11 -0.6
837,087 + HGI48_RS03940 0.11 +0.7
837,108 + +1.2
837,108 + HGI48_RS03940 0.19 +0.2
837,464 + HGI48_RS03945 0.14 -0.3
837,464 + HGI48_RS03945 0.14 -1.6
837,464 + HGI48_RS03945 0.14 -0.7
837,464 + HGI48_RS03945 0.14 +0.7
837,464 + HGI48_RS03945 0.14 +0.5
837,464 + HGI48_RS03945 0.14 -1.5
837,464 + HGI48_RS03945 0.14 -0.3
837,464 + -0.3
837,464 + +0.2
837,465 - HGI48_RS03945 0.14 +0.0
837,465 - +1.2
837,465 - HGI48_RS03945 0.14 -0.3
837,465 - HGI48_RS03945 0.14 +0.3
837,477 + HGI48_RS03945 0.16 -1.8
837,477 + HGI48_RS03945 0.16 +1.1
837,477 + HGI48_RS03945 0.16 +0.0
837,477 + HGI48_RS03945 0.16 +0.3
837,478 - HGI48_RS03945 0.16 -0.5
837,478 - HGI48_RS03945 0.16 -0.7
837,478 - +0.7
837,478 - HGI48_RS03945 0.16 -1.4
837,478 - HGI48_RS03945 0.16 +0.3
837,478 - HGI48_RS03945 0.16 +0.2
837,478 - HGI48_RS03945 0.16 +0.3
837,478 - HGI48_RS03945 0.16 +0.5
837,516 + -0.3
837,542 - HGI48_RS03945 0.23 -1.3
837,694 + HGI48_RS03945 0.39 -0.1
837,694 + HGI48_RS03945 0.39 +1.3
837,694 + HGI48_RS03945 0.39 -0.8
837,694 + HGI48_RS03945 0.39 -0.5
837,695 - HGI48_RS03945 0.39 -1.6
837,793 + HGI48_RS03945 0.49 +0.9
837,794 - HGI48_RS03945 0.49 -1.2
837,845 - HGI48_RS03945 0.55 -0.8
837,845 - HGI48_RS03945 0.55 -0.3
837,845 - +1.3
837,851 + HGI48_RS03945 0.55 -0.0
837,851 + HGI48_RS03945 0.55 -1.8
837,852 - HGI48_RS03945 0.55 +0.0
838,132 + HGI48_RS03945 0.85 -0.4
838,132 + HGI48_RS03945 0.85 +1.6
838,132 + HGI48_RS03945 0.85 -1.6
838,133 - HGI48_RS03945 0.85 -1.0
838,133 - HGI48_RS03945 0.85 +1.6
838,133 - -0.8
838,133 - HGI48_RS03945 0.85 -1.3
838,264 + -2.1
838,264 + +0.6
838,264 + +0.5
838,264 + -0.1
838,264 + +0.6
838,264 + -1.8
838,264 + +0.2
838,265 - -0.5
838,265 - -0.4
838,265 - -0.3
838,265 - +0.0
838,273 + +0.3
838,274 - +1.3
838,299 + -1.1
838,380 + HGI48_RS03950 0.15 +0.0
838,380 + HGI48_RS03950 0.15 -2.1
838,380 + HGI48_RS03950 0.15 -0.1
838,380 + HGI48_RS03950 0.15 -0.1
838,381 - HGI48_RS03950 0.15 -0.2
838,381 - +0.2
838,381 - HGI48_RS03950 0.15 -1.8
838,381 - HGI48_RS03950 0.15 -1.3
838,381 - HGI48_RS03950 0.15 +0.5
838,381 - HGI48_RS03950 0.15 -0.3
838,381 - HGI48_RS03950 0.15 +0.3
838,381 - +1.7
838,430 + HGI48_RS03950 0.25 -0.2
838,430 + HGI48_RS03950 0.25 +0.0
838,430 + HGI48_RS03950 0.25 -0.3
838,431 - HGI48_RS03950 0.25 +0.1
838,431 - HGI48_RS03950 0.25 -0.7
838,431 - HGI48_RS03950 0.25 +1.1
838,431 - HGI48_RS03950 0.25 +0.7
838,431 - HGI48_RS03950 0.25 +0.5
838,431 - HGI48_RS03950 0.25 -1.6
838,431 - HGI48_RS03950 0.25 +0.7
838,431 - HGI48_RS03950 0.25 -2.3
838,437 + HGI48_RS03950 0.26 -0.8
838,437 + HGI48_RS03950 0.26 +0.3
838,437 + HGI48_RS03950 0.26 -2.1
838,438 - HGI48_RS03950 0.26 +0.3
838,569 + HGI48_RS03950 0.50 -1.1
838,570 - HGI48_RS03950 0.51 +0.6
838,742 - HGI48_RS03950 0.83 -0.8
838,846 + +0.7
838,847 - -0.8
838,847 - -0.1
838,875 - +1.7
838,875 - -0.3
838,875 - -0.2
838,985 - HGI48_RS03955 0.11 -0.7
839,095 - HGI48_RS03955 0.23 -1.5
839,228 + HGI48_RS03955 0.38 -0.3
839,228 + HGI48_RS03955 0.38 +0.3
839,228 + HGI48_RS03955 0.38 +0.1
839,228 + HGI48_RS03955 0.38 -2.4
839,229 - HGI48_RS03955 0.38 +0.5
839,229 - HGI48_RS03955 0.38 -0.3

Or see this region's nucleotide sequence