Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03895 and HGI48_RS03900 overlap by 4 nucleotides HGI48_RS03900 and HGI48_RS03905 are separated by 11 nucleotides HGI48_RS03905 and HGI48_RS03910 overlap by 4 nucleotides
HGI48_RS03895: HGI48_RS03895 - P-type conjugative transfer protein TrbL, at 827,772 to 829,139
_RS03895
HGI48_RS03900: HGI48_RS03900 - hypothetical protein, at 829,136 to 829,426
_RS03900
HGI48_RS03905: HGI48_RS03905 - P-type conjugative transfer protein TrbJ, at 829,438 to 830,178
_RS03905
HGI48_RS03910: HGI48_RS03910 - conjugal transfer protein TrbE, at 830,175 to 832,625
_RS03910
Position (kb) 829
830 Strain fitness (log2 ratio) -2
-1
0
1
2 at 828.221 kb on + strand, within HGI48_RS03895 at 828.373 kb on + strand, within HGI48_RS03895 at 828.373 kb on + strand, within HGI48_RS03895 at 828.373 kb on + strand, within HGI48_RS03895 at 828.645 kb on + strand, within HGI48_RS03895 at 828.646 kb on - strand at 828.849 kb on + strand, within HGI48_RS03895 at 828.913 kb on + strand, within HGI48_RS03895 at 828.914 kb on - strand, within HGI48_RS03895 at 828.914 kb on - strand, within HGI48_RS03895 at 828.914 kb on - strand, within HGI48_RS03895 at 828.932 kb on - strand, within HGI48_RS03895 at 828.932 kb on - strand, within HGI48_RS03895 at 829.000 kb on + strand, within HGI48_RS03895 at 829.000 kb on + strand, within HGI48_RS03895 at 829.001 kb on - strand, within HGI48_RS03895 at 829.090 kb on + strand at 829.091 kb on - strand at 829.091 kb on - strand at 829.206 kb on + strand, within HGI48_RS03900 at 829.206 kb on + strand, within HGI48_RS03900 at 829.206 kb on + strand at 829.207 kb on - strand, within HGI48_RS03900 at 829.207 kb on - strand, within HGI48_RS03900 at 829.207 kb on - strand, within HGI48_RS03900 at 829.207 kb on - strand, within HGI48_RS03900 at 829.317 kb on - strand, within HGI48_RS03900 at 829.317 kb on - strand, within HGI48_RS03900 at 829.452 kb on - strand at 829.651 kb on + strand, within HGI48_RS03905 at 829.829 kb on + strand, within HGI48_RS03905 at 830.422 kb on + strand, within HGI48_RS03910 at 830.422 kb on + strand, within HGI48_RS03910 at 830.422 kb on + strand, within HGI48_RS03910 at 830.423 kb on - strand, within HGI48_RS03910 at 830.423 kb on - strand, within HGI48_RS03910 at 830.423 kb on - strand, within HGI48_RS03910 at 830.423 kb on - strand, within HGI48_RS03910 at 830.423 kb on - strand, within HGI48_RS03910 at 830.425 kb on + strand, within HGI48_RS03910 at 830.425 kb on + strand, within HGI48_RS03910 at 830.426 kb on - strand, within HGI48_RS03910 at 830.426 kb on - strand, within HGI48_RS03910 at 830.426 kb on - strand, within HGI48_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 828,221 + HGI48_RS03895 0.33 -1.1 828,373 + HGI48_RS03895 0.44 +0.4 828,373 + HGI48_RS03895 0.44 +0.7 828,373 + HGI48_RS03895 0.44 -1.0 828,645 + HGI48_RS03895 0.64 +0.3 828,646 - +2.1 828,849 + HGI48_RS03895 0.79 +0.3 828,913 + HGI48_RS03895 0.83 -0.6 828,914 - HGI48_RS03895 0.83 -1.6 828,914 - HGI48_RS03895 0.83 -0.2 828,914 - HGI48_RS03895 0.83 -1.6 828,932 - HGI48_RS03895 0.85 +0.3 828,932 - HGI48_RS03895 0.85 -0.2 829,000 + HGI48_RS03895 0.90 -0.2 829,000 + HGI48_RS03895 0.90 -2.6 829,001 - HGI48_RS03895 0.90 +0.2 829,090 + +2.2 829,091 - -1.1 829,091 - -1.8 829,206 + HGI48_RS03900 0.24 -2.4 829,206 + HGI48_RS03900 0.24 -2.4 829,206 + +0.2 829,207 - HGI48_RS03900 0.24 +0.7 829,207 - HGI48_RS03900 0.24 -0.2 829,207 - HGI48_RS03900 0.24 -0.8 829,207 - HGI48_RS03900 0.24 -2.2 829,317 - HGI48_RS03900 0.62 -1.6 829,317 - HGI48_RS03900 0.62 +0.0 829,452 - -2.2 829,651 + HGI48_RS03905 0.29 +0.0 829,829 + HGI48_RS03905 0.53 +0.6 830,422 + HGI48_RS03910 0.10 -0.8 830,422 + HGI48_RS03910 0.10 +0.4 830,422 + HGI48_RS03910 0.10 -0.1 830,423 - HGI48_RS03910 0.10 +1.3 830,423 - HGI48_RS03910 0.10 -0.6 830,423 - HGI48_RS03910 0.10 -0.6 830,423 - HGI48_RS03910 0.10 -1.8 830,423 - HGI48_RS03910 0.10 -0.6 830,425 + HGI48_RS03910 0.10 +0.4 830,425 + HGI48_RS03910 0.10 -2.4 830,426 - HGI48_RS03910 0.10 +0.3 830,426 - HGI48_RS03910 0.10 -0.4 830,426 - HGI48_RS03910 0.10 -0.1
Or see this region's nucleotide sequence