Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03260 and HGI48_RS03265 are separated by 127 nucleotides HGI48_RS03265 and HGI48_RS03270 are separated by 108 nucleotides HGI48_RS03270 and HGI48_RS03275 are separated by 12 nucleotides
HGI48_RS03260: HGI48_RS03260 - polyribonucleotide nucleotidyltransferase, at 687,965 to 690,085
_RS03260
HGI48_RS03265: HGI48_RS03265 - lipoprotein NlpI, at 690,213 to 691,097
_RS03265
HGI48_RS03270: HGI48_RS03270 - protein YrbN, at 691,206 to 691,265
_RS03270
HGI48_RS03275: HGI48_RS03275 - DEAD/DEAH family ATP-dependent RNA helicase, at 691,278 to 693,164
_RS03275
Position (kb) 690
691
692 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 689.232 kb on - strand, within HGI48_RS03260 at 689.281 kb on + strand, within HGI48_RS03260 at 689.282 kb on - strand, within HGI48_RS03260 at 689.282 kb on - strand, within HGI48_RS03260 at 689.371 kb on - strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.387 kb on + strand, within HGI48_RS03260 at 689.388 kb on - strand, within HGI48_RS03260 at 689.388 kb on - strand, within HGI48_RS03260 at 689.388 kb on - strand at 689.388 kb on - strand, within HGI48_RS03260 at 689.590 kb on + strand, within HGI48_RS03260 at 689.591 kb on - strand, within HGI48_RS03260 at 689.743 kb on + strand, within HGI48_RS03260 at 689.833 kb on + strand, within HGI48_RS03260 at 689.833 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.837 kb on + strand, within HGI48_RS03260 at 689.838 kb on - strand, within HGI48_RS03260 at 689.838 kb on - strand at 689.838 kb on - strand, within HGI48_RS03260 at 689.845 kb on + strand, within HGI48_RS03260 at 689.914 kb on + strand at 689.914 kb on + strand at 689.914 kb on + strand at 689.914 kb on + strand at 689.915 kb on - strand at 689.915 kb on - strand at 689.957 kb on + strand at 689.979 kb on + strand at 689.991 kb on + strand at 689.992 kb on - strand at 690.031 kb on - strand at 690.083 kb on + strand at 690.083 kb on + strand at 690.084 kb on - strand at 690.084 kb on - strand at 690.113 kb on - strand at 690.134 kb on + strand at 690.134 kb on + strand at 690.134 kb on + strand at 690.135 kb on - strand at 690.135 kb on - strand at 690.238 kb on - strand at 690.254 kb on + strand at 690.255 kb on - strand at 690.381 kb on - strand, within HGI48_RS03265 at 690.403 kb on + strand, within HGI48_RS03265 at 690.407 kb on - strand, within HGI48_RS03265 at 690.407 kb on - strand, within HGI48_RS03265 at 690.408 kb on + strand, within HGI48_RS03265 at 690.513 kb on + strand, within HGI48_RS03265 at 690.526 kb on - strand, within HGI48_RS03265 at 690.526 kb on - strand, within HGI48_RS03265 at 690.526 kb on - strand, within HGI48_RS03265 at 690.581 kb on - strand, within HGI48_RS03265 at 690.598 kb on - strand, within HGI48_RS03265 at 690.604 kb on - strand, within HGI48_RS03265 at 690.634 kb on - strand, within HGI48_RS03265 at 690.866 kb on + strand, within HGI48_RS03265 at 690.881 kb on + strand, within HGI48_RS03265 at 690.928 kb on - strand at 690.932 kb on - strand, within HGI48_RS03265 at 690.932 kb on - strand, within HGI48_RS03265 at 690.936 kb on - strand, within HGI48_RS03265 at 690.943 kb on - strand, within HGI48_RS03265 at 690.943 kb on - strand, within HGI48_RS03265 at 690.946 kb on + strand at 690.946 kb on + strand at 690.946 kb on + strand, within HGI48_RS03265 at 691.150 kb on - strand at 691.222 kb on - strand, within HGI48_RS03270 at 691.238 kb on - strand, within HGI48_RS03270 at 691.241 kb on + strand, within HGI48_RS03270 at 691.276 kb on - strand at 691.577 kb on + strand, within HGI48_RS03275 at 691.577 kb on + strand, within HGI48_RS03275 at 691.628 kb on - strand, within HGI48_RS03275 at 691.960 kb on - strand, within HGI48_RS03275
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 689,232 - HGI48_RS03260 0.60 -1.1 689,281 + HGI48_RS03260 0.62 +0.5 689,282 - HGI48_RS03260 0.62 -0.6 689,282 - HGI48_RS03260 0.62 -1.8 689,371 - HGI48_RS03260 0.66 -1.2 689,387 + HGI48_RS03260 0.67 -0.1 689,387 + HGI48_RS03260 0.67 +0.5 689,387 + HGI48_RS03260 0.67 +0.3 689,387 + HGI48_RS03260 0.67 +0.2 689,387 + HGI48_RS03260 0.67 +1.6 689,388 - HGI48_RS03260 0.67 +1.4 689,388 - HGI48_RS03260 0.67 -1.5 689,388 - +2.5 689,388 - HGI48_RS03260 0.67 -1.0 689,590 + HGI48_RS03260 0.77 -1.8 689,591 - HGI48_RS03260 0.77 +0.5 689,743 + HGI48_RS03260 0.84 +0.5 689,833 + HGI48_RS03260 0.88 -0.0 689,833 + HGI48_RS03260 0.88 +1.3 689,837 + HGI48_RS03260 0.88 -0.2 689,837 + HGI48_RS03260 0.88 -0.5 689,837 + HGI48_RS03260 0.88 -1.5 689,837 + HGI48_RS03260 0.88 +0.0 689,837 + HGI48_RS03260 0.88 +0.5 689,838 - HGI48_RS03260 0.88 -0.4 689,838 - +2.8 689,838 - HGI48_RS03260 0.88 -1.5 689,845 + HGI48_RS03260 0.89 +1.1 689,914 + +0.7 689,914 + -0.8 689,914 + -0.5 689,914 + -0.0 689,915 - +1.6 689,915 - +2.8 689,957 + +0.1 689,979 + +1.8 689,991 + +1.0 689,992 - +0.2 690,031 - -1.5 690,083 + -1.8 690,083 + +0.6 690,084 - +0.8 690,084 - +0.8 690,113 - -1.8 690,134 + -0.8 690,134 + +0.3 690,134 + -0.3 690,135 - -2.2 690,135 - -1.2 690,238 - +1.2 690,254 + -0.0 690,255 - -2.0 690,381 - HGI48_RS03265 0.19 -1.5 690,403 + HGI48_RS03265 0.21 -0.2 690,407 - HGI48_RS03265 0.22 -2.4 690,407 - HGI48_RS03265 0.22 -3.8 690,408 + HGI48_RS03265 0.22 -1.2 690,513 + HGI48_RS03265 0.34 +1.2 690,526 - HGI48_RS03265 0.35 -1.7 690,526 - HGI48_RS03265 0.35 -2.9 690,526 - HGI48_RS03265 0.35 -0.6 690,581 - HGI48_RS03265 0.42 -2.7 690,598 - HGI48_RS03265 0.44 -2.5 690,604 - HGI48_RS03265 0.44 -2.2 690,634 - HGI48_RS03265 0.48 -1.8 690,866 + HGI48_RS03265 0.74 -4.2 690,881 + HGI48_RS03265 0.75 -2.4 690,928 - +1.8 690,932 - HGI48_RS03265 0.81 -0.4 690,932 - HGI48_RS03265 0.81 -2.0 690,936 - HGI48_RS03265 0.82 -2.0 690,943 - HGI48_RS03265 0.82 -1.5 690,943 - HGI48_RS03265 0.82 +0.0 690,946 + -0.2 690,946 + -0.8 690,946 + HGI48_RS03265 0.83 -0.8 691,150 - -0.9 691,222 - HGI48_RS03270 0.27 -1.8 691,238 - HGI48_RS03270 0.53 +0.6 691,241 + HGI48_RS03270 0.58 -0.8 691,276 - +0.1 691,577 + HGI48_RS03275 0.16 +0.4 691,577 + HGI48_RS03275 0.16 +0.9 691,628 - HGI48_RS03275 0.19 +0.5 691,960 - HGI48_RS03275 0.36 -1.2
Or see this region's nucleotide sequence