Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02930 and HGI48_RS02935 overlap by 1 nucleotides HGI48_RS02935 and HGI48_RS02940 overlap by 4 nucleotides HGI48_RS02940 and HGI48_RS02945 are separated by 140 nucleotides
HGI48_RS02930: HGI48_RS02930 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 630,348 to 631,283
_RS02930
HGI48_RS02935: HGI48_RS02935 - DNA cytosine methyltransferase, at 631,283 to 632,200
_RS02935
HGI48_RS02940: HGI48_RS02940 - phosphoadenosine phosphosulfate reductase family protein, at 632,197 to 633,201
_RS02940
HGI48_RS02945: HGI48_RS02945 - replication endonuclease, at 633,342 to 635,492
_RS02945
Position (kb) 632
633
634 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 631.237 kb on - strand at 631.299 kb on - strand at 631.299 kb on - strand at 631.299 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.418 kb on - strand, within HGI48_RS02935 at 631.467 kb on - strand, within HGI48_RS02935 at 631.467 kb on - strand, within HGI48_RS02935 at 631.467 kb on - strand at 631.467 kb on - strand, within HGI48_RS02935 at 631.581 kb on + strand, within HGI48_RS02935 at 631.581 kb on + strand, within HGI48_RS02935 at 631.582 kb on - strand at 631.582 kb on - strand, within HGI48_RS02935 at 631.651 kb on + strand, within HGI48_RS02935 at 631.680 kb on + strand at 631.681 kb on - strand at 631.681 kb on - strand, within HGI48_RS02935 at 631.681 kb on - strand, within HGI48_RS02935 at 631.681 kb on - strand, within HGI48_RS02935 at 631.870 kb on + strand, within HGI48_RS02935 at 631.871 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 632.178 kb on - strand at 632.178 kb on - strand at 632.201 kb on + strand at 632.201 kb on + strand at 632.237 kb on + strand at 632.237 kb on + strand at 632.237 kb on + strand at 632.237 kb on + strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.301 kb on - strand, within HGI48_RS02940 at 632.366 kb on - strand, within HGI48_RS02940 at 632.399 kb on + strand, within HGI48_RS02940 at 632.400 kb on - strand at 632.400 kb on - strand, within HGI48_RS02940 at 632.400 kb on - strand, within HGI48_RS02940 at 632.400 kb on - strand, within HGI48_RS02940 at 632.485 kb on - strand, within HGI48_RS02940 at 632.596 kb on - strand, within HGI48_RS02940 at 632.596 kb on - strand, within HGI48_RS02940 at 632.637 kb on - strand, within HGI48_RS02940 at 632.653 kb on - strand at 632.672 kb on - strand, within HGI48_RS02940 at 632.672 kb on - strand, within HGI48_RS02940 at 632.872 kb on - strand, within HGI48_RS02940 at 632.887 kb on - strand, within HGI48_RS02940 at 632.887 kb on - strand, within HGI48_RS02940 at 632.927 kb on + strand at 632.928 kb on - strand, within HGI48_RS02940 at 633.057 kb on - strand at 633.109 kb on - strand at 633.226 kb on - strand at 633.226 kb on - strand at 633.237 kb on - strand at 633.291 kb on + strand at 633.291 kb on + strand at 633.292 kb on - strand at 633.292 kb on - strand at 633.292 kb on - strand at 633.292 kb on - strand at 633.411 kb on + strand at 633.424 kb on - strand at 633.426 kb on + strand at 633.426 kb on + strand at 633.426 kb on + strand at 633.427 kb on - strand at 633.479 kb on + strand at 633.479 kb on + strand at 633.479 kb on + strand at 633.480 kb on - strand at 633.480 kb on - strand at 633.480 kb on - strand at 633.480 kb on - strand at 633.480 kb on - strand at 633.483 kb on + strand at 633.484 kb on - strand at 633.503 kb on + strand at 633.503 kb on + strand at 633.503 kb on + strand at 633.504 kb on - strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.507 kb on + strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.511 kb on + strand at 633.511 kb on + strand at 633.511 kb on + strand at 633.511 kb on + strand at 633.511 kb on + strand at 633.511 kb on + strand at 633.511 kb on + strand at 633.511 kb on + strand at 633.512 kb on - strand at 633.512 kb on - strand at 633.512 kb on - strand at 633.512 kb on - strand at 633.512 kb on - strand at 633.512 kb on - strand at 633.729 kb on + strand, within HGI48_RS02945 at 633.736 kb on - strand, within HGI48_RS02945 at 633.736 kb on - strand, within HGI48_RS02945 at 633.736 kb on - strand, within HGI48_RS02945 at 633.736 kb on - strand, within HGI48_RS02945 at 633.796 kb on - strand, within HGI48_RS02945 at 633.911 kb on - strand, within HGI48_RS02945 at 633.911 kb on - strand, within HGI48_RS02945 at 633.911 kb on - strand, within HGI48_RS02945 at 633.911 kb on - strand, within HGI48_RS02945 at 633.911 kb on - strand, within HGI48_RS02945 at 633.911 kb on - strand, within HGI48_RS02945 at 633.911 kb on - strand, within HGI48_RS02945 at 633.911 kb on - strand, within HGI48_RS02945 at 633.911 kb on - strand, within HGI48_RS02945 at 633.928 kb on - strand, within HGI48_RS02945 at 633.951 kb on + strand, within HGI48_RS02945 at 633.952 kb on - strand, within HGI48_RS02945 at 633.952 kb on - strand, within HGI48_RS02945 at 633.952 kb on - strand, within HGI48_RS02945 at 633.952 kb on - strand, within HGI48_RS02945 at 634.040 kb on + strand, within HGI48_RS02945 at 634.041 kb on - strand at 634.063 kb on + strand, within HGI48_RS02945 at 634.064 kb on - strand, within HGI48_RS02945 at 634.064 kb on - strand, within HGI48_RS02945 at 634.064 kb on - strand, within HGI48_RS02945 at 634.176 kb on + strand, within HGI48_RS02945 at 634.176 kb on + strand, within HGI48_RS02945 at 634.177 kb on - strand, within HGI48_RS02945
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 631,237 - +0.1 631,299 - +1.9 631,299 - -1.0 631,299 - -0.8 631,302 - -0.2 631,302 - +0.9 631,302 - +0.1 631,302 - +1.4 631,302 - -2.5 631,418 - HGI48_RS02935 0.15 -2.0 631,467 - HGI48_RS02935 0.20 -1.1 631,467 - HGI48_RS02935 0.20 +1.3 631,467 - +0.2 631,467 - HGI48_RS02935 0.20 +1.1 631,581 + HGI48_RS02935 0.32 -0.8 631,581 + HGI48_RS02935 0.32 -0.6 631,582 - -0.8 631,582 - HGI48_RS02935 0.33 -2.3 631,651 + HGI48_RS02935 0.40 -2.4 631,680 + +1.8 631,681 - +0.8 631,681 - HGI48_RS02935 0.43 -0.3 631,681 - HGI48_RS02935 0.43 -1.0 631,681 - HGI48_RS02935 0.43 +1.4 631,870 + HGI48_RS02935 0.64 -4.1 631,871 - HGI48_RS02935 0.64 -1.1 631,973 - HGI48_RS02935 0.75 -0.5 631,973 - HGI48_RS02935 0.75 -0.7 631,973 - HGI48_RS02935 0.75 -0.2 631,973 - HGI48_RS02935 0.75 -0.7 631,973 - HGI48_RS02935 0.75 -1.8 631,973 - HGI48_RS02935 0.75 -0.2 631,973 - HGI48_RS02935 0.75 -0.2 632,178 - -0.2 632,178 - +0.3 632,201 + -0.3 632,201 + +1.1 632,237 + -0.9 632,237 + +0.8 632,237 + -1.8 632,237 + +0.1 632,238 - -0.2 632,238 - +1.5 632,238 - -0.3 632,238 - +1.2 632,238 - -1.2 632,301 - HGI48_RS02940 0.10 +0.3 632,366 - HGI48_RS02940 0.17 +1.3 632,399 + HGI48_RS02940 0.20 -0.4 632,400 - -0.2 632,400 - HGI48_RS02940 0.20 -0.7 632,400 - HGI48_RS02940 0.20 -1.2 632,400 - HGI48_RS02940 0.20 -0.5 632,485 - HGI48_RS02940 0.29 -2.0 632,596 - HGI48_RS02940 0.40 -1.3 632,596 - HGI48_RS02940 0.40 -1.2 632,637 - HGI48_RS02940 0.44 -1.0 632,653 - +0.2 632,672 - HGI48_RS02940 0.47 -0.2 632,672 - HGI48_RS02940 0.47 +0.2 632,872 - HGI48_RS02940 0.67 -0.1 632,887 - HGI48_RS02940 0.69 +0.1 632,887 - HGI48_RS02940 0.69 -2.9 632,927 + +0.2 632,928 - HGI48_RS02940 0.73 -0.6 633,057 - +0.8 633,109 - +0.3 633,226 - +0.3 633,226 - +0.5 633,237 - +0.0 633,291 + -1.2 633,291 + +0.5 633,292 - -0.2 633,292 - -0.3 633,292 - -0.1 633,292 - +0.3 633,411 + -2.0 633,424 - +0.1 633,426 + -1.5 633,426 + +0.0 633,426 + -1.4 633,427 - +1.1 633,479 + -2.4 633,479 + -0.4 633,479 + -2.0 633,480 - -2.4 633,480 - -0.8 633,480 - +0.1 633,480 - -0.8 633,480 - +1.0 633,483 + -0.6 633,484 - -1.0 633,503 + -2.4 633,503 + -0.1 633,503 + +0.0 633,504 - -2.2 633,507 + -0.8 633,507 + +0.4 633,507 + -1.8 633,507 + +0.2 633,507 + +0.6 633,507 + +0.0 633,507 + +0.5 633,507 + -2.5 633,507 + +0.5 633,507 + -2.5 633,507 + -0.5 633,507 + -0.7 633,508 - -1.8 633,508 - -0.7 633,508 - +0.4 633,508 - -0.6 633,508 - -0.2 633,508 - -0.3 633,508 - +1.1 633,511 + -1.8 633,511 + -0.2 633,511 + +0.9 633,511 + -0.6 633,511 + +0.2 633,511 + +3.4 633,511 + -0.3 633,511 + -1.0 633,512 - -2.0 633,512 - -0.2 633,512 - +0.1 633,512 - -0.2 633,512 - -0.8 633,512 - -2.0 633,729 + HGI48_RS02945 0.18 +1.3 633,736 - HGI48_RS02945 0.18 +0.1 633,736 - HGI48_RS02945 0.18 -1.0 633,736 - HGI48_RS02945 0.18 +0.4 633,736 - HGI48_RS02945 0.18 +0.6 633,796 - HGI48_RS02945 0.21 -0.4 633,911 - HGI48_RS02945 0.26 -0.8 633,911 - HGI48_RS02945 0.26 -0.2 633,911 - HGI48_RS02945 0.26 +0.3 633,911 - HGI48_RS02945 0.26 -1.2 633,911 - HGI48_RS02945 0.26 -0.9 633,911 - HGI48_RS02945 0.26 +0.1 633,911 - HGI48_RS02945 0.26 +0.8 633,911 - HGI48_RS02945 0.26 -0.0 633,911 - HGI48_RS02945 0.26 +0.5 633,928 - HGI48_RS02945 0.27 +0.1 633,951 + HGI48_RS02945 0.28 -0.9 633,952 - HGI48_RS02945 0.28 +0.1 633,952 - HGI48_RS02945 0.28 -1.0 633,952 - HGI48_RS02945 0.28 -0.5 633,952 - HGI48_RS02945 0.28 -0.6 634,040 + HGI48_RS02945 0.32 +0.4 634,041 - -0.8 634,063 + HGI48_RS02945 0.34 -1.2 634,064 - HGI48_RS02945 0.34 -0.2 634,064 - HGI48_RS02945 0.34 -1.5 634,064 - HGI48_RS02945 0.34 -0.6 634,176 + HGI48_RS02945 0.39 -0.3 634,176 + HGI48_RS02945 0.39 +0.2 634,177 - HGI48_RS02945 0.39 -0.2
Or see this region's nucleotide sequence