Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02585

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02575 and HGI48_RS02580 are separated by 0 nucleotidesHGI48_RS02580 and HGI48_RS02585 are separated by 27 nucleotidesHGI48_RS02585 and HGI48_RS02590 are separated by 277 nucleotides HGI48_RS02575: HGI48_RS02575 - heavy metal translocating P-type ATPase, at 555,985 to 558,390 _RS02575 HGI48_RS02580: HGI48_RS02580 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 558,391 to 558,822 _RS02580 HGI48_RS02585: HGI48_RS02585 - LacI family DNA-binding transcriptional regulator, at 558,850 to 559,872 _RS02585 HGI48_RS02590: HGI48_RS02590 - L-talarate/galactarate dehydratase, at 560,150 to 561,349 _RS02590 Position (kb) 558 559 560Strain fitness (log2 ratio) -2 -1 0 1 2 3at 557.957 kb on + strand, within HGI48_RS02575at 558.349 kb on + strandat 558.349 kb on + strandat 558.349 kb on + strandat 558.350 kb on - strandat 558.363 kb on + strandat 558.370 kb on + strandat 558.372 kb on + strandat 558.373 kb on - strandat 558.464 kb on + strand, within HGI48_RS02580at 558.464 kb on + strand, within HGI48_RS02580at 558.465 kb on - strandat 558.465 kb on - strand, within HGI48_RS02580at 558.484 kb on - strandat 558.496 kb on + strand, within HGI48_RS02580at 558.505 kb on + strand, within HGI48_RS02580at 558.505 kb on + strand, within HGI48_RS02580at 558.506 kb on - strand, within HGI48_RS02580at 558.538 kb on - strandat 558.683 kb on + strandat 558.683 kb on + strand, within HGI48_RS02580at 558.683 kb on + strandat 558.684 kb on - strand, within HGI48_RS02580at 558.684 kb on - strand, within HGI48_RS02580at 558.684 kb on - strand, within HGI48_RS02580at 558.807 kb on + strandat 558.981 kb on + strand, within HGI48_RS02585at 558.981 kb on + strand, within HGI48_RS02585at 558.982 kb on - strand, within HGI48_RS02585at 558.982 kb on - strandat 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strandat 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strandat 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strandat 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.372 kb on - strand, within HGI48_RS02585at 559.535 kb on + strand, within HGI48_RS02585at 559.653 kb on + strandat 559.653 kb on + strand, within HGI48_RS02585at 559.654 kb on - strandat 559.892 kb on + strandat 559.892 kb on + strandat 559.892 kb on + strandat 559.893 kb on - strandat 559.893 kb on - strandat 559.893 kb on - strandat 559.893 kb on - strandat 559.893 kb on - strandat 559.985 kb on + strandat 559.985 kb on + strandat 560.070 kb on + strandat 560.070 kb on + strandat 560.071 kb on - strandat 560.184 kb on - strandat 560.230 kb on + strandat 560.296 kb on - strand, within HGI48_RS02590at 560.296 kb on - strand, within HGI48_RS02590at 560.336 kb on - strand, within HGI48_RS02590at 560.336 kb on - strand, within HGI48_RS02590at 560.338 kb on + strand, within HGI48_RS02590at 560.338 kb on + strand, within HGI48_RS02590at 560.339 kb on - strand, within HGI48_RS02590at 560.339 kb on - strand, within HGI48_RS02590at 560.339 kb on - strand, within HGI48_RS02590at 560.388 kb on - strand, within HGI48_RS02590at 560.417 kb on + strand, within HGI48_RS02590at 560.417 kb on + strand, within HGI48_RS02590at 560.417 kb on + strandat 560.417 kb on + strand, within HGI48_RS02590at 560.418 kb on - strand, within HGI48_RS02590at 560.418 kb on - strand, within HGI48_RS02590at 560.418 kb on - strand, within HGI48_RS02590at 560.418 kb on - strand, within HGI48_RS02590at 560.483 kb on + strand, within HGI48_RS02590at 560.581 kb on + strand, within HGI48_RS02590at 560.582 kb on - strand, within HGI48_RS02590at 560.582 kb on - strand, within HGI48_RS02590at 560.610 kb on + strand, within HGI48_RS02590at 560.642 kb on + strand, within HGI48_RS02590at 560.642 kb on + strand, within HGI48_RS02590at 560.643 kb on - strand, within HGI48_RS02590at 560.643 kb on - strand, within HGI48_RS02590at 560.643 kb on - strand, within HGI48_RS02590at 560.643 kb on - strand, within HGI48_RS02590at 560.643 kb on - strandat 560.643 kb on - strand, within HGI48_RS02590at 560.685 kb on + strand, within HGI48_RS02590

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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557,957 + HGI48_RS02575 0.82 -1.2
558,349 + -0.2
558,349 + -2.2
558,349 + +1.1
558,350 - +2.4
558,363 + -1.2
558,370 + -0.4
558,372 + -1.0
558,373 - -2.5
558,464 + HGI48_RS02580 0.17 -1.1
558,464 + HGI48_RS02580 0.17 -1.0
558,465 - +0.2
558,465 - HGI48_RS02580 0.17 +0.2
558,484 - -0.8
558,496 + HGI48_RS02580 0.24 +0.2
558,505 + HGI48_RS02580 0.26 -0.5
558,505 + HGI48_RS02580 0.26 +0.4
558,506 - HGI48_RS02580 0.27 +0.1
558,538 - +0.2
558,683 + +0.8
558,683 + HGI48_RS02580 0.68 +0.1
558,683 + +1.4
558,684 - HGI48_RS02580 0.68 +1.1
558,684 - HGI48_RS02580 0.68 +0.0
558,684 - HGI48_RS02580 0.68 -0.5
558,807 + +0.5
558,981 + HGI48_RS02585 0.13 +0.7
558,981 + HGI48_RS02585 0.13 +0.0
558,982 - HGI48_RS02585 0.13 -0.6
558,982 - +2.8
559,322 + HGI48_RS02585 0.46 -1.1
559,322 + HGI48_RS02585 0.46 +0.3
559,322 + HGI48_RS02585 0.46 +1.5
559,322 + -0.8
559,322 + HGI48_RS02585 0.46 +0.3
559,322 + HGI48_RS02585 0.46 -0.5
559,322 + +1.6
559,322 + HGI48_RS02585 0.46 +0.2
559,322 + HGI48_RS02585 0.46 -1.2
559,322 + HGI48_RS02585 0.46 -0.5
559,322 + +0.2
559,323 - HGI48_RS02585 0.46 -0.2
559,323 - HGI48_RS02585 0.46 +0.4
559,323 - HGI48_RS02585 0.46 -0.5
559,323 - HGI48_RS02585 0.46 +0.1
559,323 - HGI48_RS02585 0.46 -0.8
559,323 - HGI48_RS02585 0.46 +0.6
559,323 - HGI48_RS02585 0.46 +0.5
559,323 - HGI48_RS02585 0.46 -0.1
559,372 - HGI48_RS02585 0.51 -0.2
559,535 + HGI48_RS02585 0.67 -0.2
559,653 + -0.2
559,653 + HGI48_RS02585 0.78 -0.2
559,654 - -0.2
559,892 + -0.1
559,892 + -0.5
559,892 + -0.5
559,893 - -1.8
559,893 - +0.4
559,893 - -0.7
559,893 - -0.3
559,893 - +1.7
559,985 + -0.3
559,985 + -1.5
560,070 + +0.8
560,070 + -0.3
560,071 - -1.2
560,184 - +0.2
560,230 + -0.8
560,296 - HGI48_RS02590 0.12 +0.8
560,296 - HGI48_RS02590 0.12 +0.6
560,336 - HGI48_RS02590 0.15 -0.2
560,336 - HGI48_RS02590 0.15 -1.5
560,338 + HGI48_RS02590 0.16 +1.4
560,338 + HGI48_RS02590 0.16 +0.2
560,339 - HGI48_RS02590 0.16 -1.3
560,339 - HGI48_RS02590 0.16 +2.2
560,339 - HGI48_RS02590 0.16 -0.0
560,388 - HGI48_RS02590 0.20 -0.2
560,417 + HGI48_RS02590 0.22 +0.1
560,417 + HGI48_RS02590 0.22 -0.5
560,417 + +0.8
560,417 + HGI48_RS02590 0.22 -1.3
560,418 - HGI48_RS02590 0.22 -0.4
560,418 - HGI48_RS02590 0.22 -0.0
560,418 - HGI48_RS02590 0.22 +1.2
560,418 - HGI48_RS02590 0.22 -1.5
560,483 + HGI48_RS02590 0.28 +1.0
560,581 + HGI48_RS02590 0.36 +0.4
560,582 - HGI48_RS02590 0.36 -1.5
560,582 - HGI48_RS02590 0.36 -0.1
560,610 + HGI48_RS02590 0.38 -1.8
560,642 + HGI48_RS02590 0.41 +0.4
560,642 + HGI48_RS02590 0.41 -0.8
560,643 - HGI48_RS02590 0.41 +0.2
560,643 - HGI48_RS02590 0.41 +1.3
560,643 - HGI48_RS02590 0.41 +0.2
560,643 - HGI48_RS02590 0.41 -0.0
560,643 - +2.2
560,643 - HGI48_RS02590 0.41 +1.1
560,685 + HGI48_RS02590 0.45 +2.0

Or see this region's nucleotide sequence