Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01860 and HGI48_RS01865 overlap by 4 nucleotides HGI48_RS01865 and HGI48_RS01870 overlap by 7 nucleotides HGI48_RS01870 and HGI48_RS01875 are separated by 391 nucleotides HGI48_RS01875 and HGI48_RS01880 overlap by 32 nucleotides
HGI48_RS01860: HGI48_RS01860 - transglutaminase family protein, at 413,565 to 414,392
_RS01860
HGI48_RS01865: HGI48_RS01865 - alpha-E domain-containing protein, at 414,389 to 415,318
_RS01865
HGI48_RS01870: HGI48_RS01870 - circularly permuted type 2 ATP-grasp protein, at 415,312 to 416,751
_RS01870
HGI48_RS01875: HGI48_RS01875 - ParD-like family protein, at 417,143 to 417,379
_RS01875
HGI48_RS01880: HGI48_RS01880 - type II toxin-antitoxin system RelE/ParE family toxin, at 417,348 to 417,677
_RS01880
Position (kb) 415
416
417 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 414.326 kb on - strand at 414.326 kb on - strand at 414.406 kb on - strand at 414.406 kb on - strand at 414.409 kb on + strand at 414.410 kb on - strand at 414.410 kb on - strand at 414.410 kb on - strand at 414.410 kb on - strand at 414.463 kb on - strand at 414.628 kb on + strand, within HGI48_RS01865 at 414.629 kb on - strand, within HGI48_RS01865 at 414.629 kb on - strand, within HGI48_RS01865 at 414.632 kb on + strand at 414.633 kb on - strand, within HGI48_RS01865 at 414.633 kb on - strand, within HGI48_RS01865 at 414.633 kb on - strand, within HGI48_RS01865 at 414.633 kb on - strand, within HGI48_RS01865 at 414.678 kb on + strand at 414.679 kb on - strand, within HGI48_RS01865 at 414.690 kb on + strand, within HGI48_RS01865 at 414.716 kb on + strand, within HGI48_RS01865 at 414.736 kb on - strand, within HGI48_RS01865 at 414.738 kb on + strand, within HGI48_RS01865 at 414.739 kb on - strand, within HGI48_RS01865 at 414.739 kb on - strand, within HGI48_RS01865 at 414.965 kb on - strand, within HGI48_RS01865 at 415.057 kb on + strand at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.066 kb on - strand at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.134 kb on + strand, within HGI48_RS01865 at 415.135 kb on - strand, within HGI48_RS01865 at 415.159 kb on + strand, within HGI48_RS01865 at 415.159 kb on + strand, within HGI48_RS01865 at 415.159 kb on + strand, within HGI48_RS01865 at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.231 kb on - strand at 415.231 kb on - strand at 415.231 kb on - strand at 415.290 kb on + strand at 415.291 kb on - strand at 415.313 kb on + strand at 415.313 kb on + strand at 415.314 kb on - strand at 415.445 kb on + strand at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.541 kb on + strand, within HGI48_RS01870 at 415.542 kb on - strand, within HGI48_RS01870 at 415.542 kb on - strand, within HGI48_RS01870 at 415.749 kb on - strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.772 kb on + strand, within HGI48_RS01870 at 415.773 kb on - strand, within HGI48_RS01870 at 415.773 kb on - strand, within HGI48_RS01870 at 415.778 kb on + strand, within HGI48_RS01870 at 415.779 kb on - strand, within HGI48_RS01870 at 415.845 kb on - strand, within HGI48_RS01870 at 415.932 kb on + strand, within HGI48_RS01870 at 415.933 kb on - strand, within HGI48_RS01870 at 415.970 kb on + strand, within HGI48_RS01870 at 415.970 kb on + strand, within HGI48_RS01870 at 415.970 kb on + strand, within HGI48_RS01870 at 415.970 kb on + strand, within HGI48_RS01870 at 415.971 kb on - strand, within HGI48_RS01870 at 415.971 kb on - strand, within HGI48_RS01870 at 415.971 kb on - strand, within HGI48_RS01870 at 416.054 kb on + strand, within HGI48_RS01870 at 416.084 kb on - strand, within HGI48_RS01870 at 416.112 kb on + strand, within HGI48_RS01870 at 416.138 kb on + strand, within HGI48_RS01870 at 416.138 kb on + strand, within HGI48_RS01870 at 416.138 kb on + strand, within HGI48_RS01870 at 416.139 kb on - strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.228 kb on + strand, within HGI48_RS01870 at 416.229 kb on - strand, within HGI48_RS01870 at 416.256 kb on + strand, within HGI48_RS01870 at 416.270 kb on + strand, within HGI48_RS01870 at 416.270 kb on + strand, within HGI48_RS01870 at 416.270 kb on + strand at 416.270 kb on + strand, within HGI48_RS01870 at 416.270 kb on + strand, within HGI48_RS01870 at 416.271 kb on - strand, within HGI48_RS01870 at 416.271 kb on - strand, within HGI48_RS01870 at 416.271 kb on - strand at 416.271 kb on - strand, within HGI48_RS01870 at 416.271 kb on - strand, within HGI48_RS01870 at 416.273 kb on + strand, within HGI48_RS01870 at 416.273 kb on + strand, within HGI48_RS01870 at 416.273 kb on + strand, within HGI48_RS01870 at 416.274 kb on - strand, within HGI48_RS01870 at 416.274 kb on - strand, within HGI48_RS01870 at 416.274 kb on - strand, within HGI48_RS01870 at 416.299 kb on - strand, within HGI48_RS01870 at 416.299 kb on - strand, within HGI48_RS01870 at 416.299 kb on - strand, within HGI48_RS01870 at 416.321 kb on + strand, within HGI48_RS01870 at 416.321 kb on + strand, within HGI48_RS01870 at 416.322 kb on - strand, within HGI48_RS01870 at 416.325 kb on + strand, within HGI48_RS01870 at 416.325 kb on + strand, within HGI48_RS01870 at 416.326 kb on - strand, within HGI48_RS01870 at 416.326 kb on - strand, within HGI48_RS01870 at 416.364 kb on - strand, within HGI48_RS01870 at 416.429 kb on + strand, within HGI48_RS01870 at 416.430 kb on - strand, within HGI48_RS01870 at 416.430 kb on - strand, within HGI48_RS01870 at 416.433 kb on + strand, within HGI48_RS01870 at 416.433 kb on + strand, within HGI48_RS01870 at 416.433 kb on + strand, within HGI48_RS01870 at 416.434 kb on - strand, within HGI48_RS01870 at 416.434 kb on - strand, within HGI48_RS01870 at 416.490 kb on + strand, within HGI48_RS01870 at 416.490 kb on + strand, within HGI48_RS01870 at 416.490 kb on + strand, within HGI48_RS01870 at 416.490 kb on + strand, within HGI48_RS01870 at 416.490 kb on + strand at 416.490 kb on + strand, within HGI48_RS01870 at 416.491 kb on - strand, within HGI48_RS01870 at 416.491 kb on - strand, within HGI48_RS01870 at 416.526 kb on + strand, within HGI48_RS01870 at 416.526 kb on + strand, within HGI48_RS01870 at 416.527 kb on - strand, within HGI48_RS01870 at 416.567 kb on + strand, within HGI48_RS01870 at 416.567 kb on + strand, within HGI48_RS01870 at 416.574 kb on + strand, within HGI48_RS01870 at 416.580 kb on + strand, within HGI48_RS01870 at 416.675 kb on + strand at 416.675 kb on + strand at 416.676 kb on - strand at 416.676 kb on - strand at 416.717 kb on + strand at 416.717 kb on + strand at 416.717 kb on + strand at 416.717 kb on + strand at 416.717 kb on + strand at 416.718 kb on - strand at 416.718 kb on - strand at 416.718 kb on - strand at 416.721 kb on - strand at 416.783 kb on + strand at 416.783 kb on + strand at 416.783 kb on + strand at 416.784 kb on - strand at 416.784 kb on - strand at 416.804 kb on - strand at 416.829 kb on + strand at 416.829 kb on + strand at 416.829 kb on + strand at 416.829 kb on + strand at 416.830 kb on - strand at 416.830 kb on - strand at 416.872 kb on - strand at 416.872 kb on - strand at 416.914 kb on - strand at 416.968 kb on + strand at 416.968 kb on + strand at 416.968 kb on + strand at 416.968 kb on + strand at 416.969 kb on - strand at 416.969 kb on - strand at 416.969 kb on - strand at 416.975 kb on + strand at 416.975 kb on + strand at 416.975 kb on + strand at 416.975 kb on + strand at 416.975 kb on + strand at 416.976 kb on - strand at 416.978 kb on + strand at 416.979 kb on - strand at 416.979 kb on - strand at 416.979 kb on - strand at 417.041 kb on + strand at 417.041 kb on + strand at 417.042 kb on - strand at 417.042 kb on - strand at 417.048 kb on + strand at 417.048 kb on + strand at 417.049 kb on - strand at 417.127 kb on + strand at 417.347 kb on + strand at 417.348 kb on - strand at 417.384 kb on + strand, within HGI48_RS01880 at 417.442 kb on + strand, within HGI48_RS01880 at 417.442 kb on + strand at 417.442 kb on + strand, within HGI48_RS01880 at 417.442 kb on + strand, within HGI48_RS01880 at 417.443 kb on - strand, within HGI48_RS01880 at 417.443 kb on - strand, within HGI48_RS01880 at 417.443 kb on - strand at 417.443 kb on - strand, within HGI48_RS01880 at 417.494 kb on - strand, within HGI48_RS01880 at 417.494 kb on - strand, within HGI48_RS01880 at 417.517 kb on + strand, within HGI48_RS01880 at 417.518 kb on - strand, within HGI48_RS01880 at 417.518 kb on - strand, within HGI48_RS01880 at 417.518 kb on - strand, within HGI48_RS01880 at 417.528 kb on - strand, within HGI48_RS01880 at 417.528 kb on - strand, within HGI48_RS01880 at 417.550 kb on + strand, within HGI48_RS01880 at 417.551 kb on - strand, within HGI48_RS01880 at 417.587 kb on + strand, within HGI48_RS01880 at 417.607 kb on + strand, within HGI48_RS01880 at 417.607 kb on + strand, within HGI48_RS01880 at 417.608 kb on - strand, within HGI48_RS01880 at 417.608 kb on - strand, within HGI48_RS01880 at 417.608 kb on - strand, within HGI48_RS01880 at 417.608 kb on - strand, within HGI48_RS01880 at 417.628 kb on - strand, within HGI48_RS01880 at 417.661 kb on + strand at 417.661 kb on + strand at 417.662 kb on - strand at 417.662 kb on - strand at 417.675 kb on + strand at 417.675 kb on + strand at 417.693 kb on + strand at 417.747 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 414,326 - -1.1 414,326 - +0.6 414,406 - +1.3 414,406 - +0.3 414,409 + -0.2 414,410 - -2.4 414,410 - +1.2 414,410 - -0.1 414,410 - +0.4 414,463 - -0.2 414,628 + HGI48_RS01865 0.26 +1.2 414,629 - HGI48_RS01865 0.26 -1.8 414,629 - HGI48_RS01865 0.26 +1.3 414,632 + +1.6 414,633 - HGI48_RS01865 0.26 -0.6 414,633 - HGI48_RS01865 0.26 -0.3 414,633 - HGI48_RS01865 0.26 -0.2 414,633 - HGI48_RS01865 0.26 +1.1 414,678 + +1.6 414,679 - HGI48_RS01865 0.31 -0.7 414,690 + HGI48_RS01865 0.32 -1.9 414,716 + HGI48_RS01865 0.35 -0.7 414,736 - HGI48_RS01865 0.37 -0.7 414,738 + HGI48_RS01865 0.38 -0.1 414,739 - HGI48_RS01865 0.38 +2.4 414,739 - HGI48_RS01865 0.38 +0.9 414,965 - HGI48_RS01865 0.62 +0.6 415,057 + +1.5 415,065 + HGI48_RS01865 0.73 -0.1 415,065 + HGI48_RS01865 0.73 -1.7 415,065 + +2.3 415,065 + HGI48_RS01865 0.73 -1.3 415,065 + HGI48_RS01865 0.73 -0.8 415,065 + HGI48_RS01865 0.73 +1.2 415,065 + HGI48_RS01865 0.73 -0.8 415,065 + HGI48_RS01865 0.73 -1.1 415,066 - +0.9 415,066 - HGI48_RS01865 0.73 -0.3 415,066 - HGI48_RS01865 0.73 -1.4 415,066 - HGI48_RS01865 0.73 -0.3 415,066 - HGI48_RS01865 0.73 +0.0 415,066 - HGI48_RS01865 0.73 +1.0 415,066 - HGI48_RS01865 0.73 -1.1 415,066 - HGI48_RS01865 0.73 -0.9 415,134 + HGI48_RS01865 0.80 +0.6 415,135 - HGI48_RS01865 0.80 +0.2 415,159 + HGI48_RS01865 0.83 -1.4 415,159 + HGI48_RS01865 0.83 +0.6 415,159 + HGI48_RS01865 0.83 -0.3 415,230 + -0.1 415,230 + +0.0 415,230 + -0.1 415,230 + -0.1 415,230 + +1.9 415,230 + +1.2 415,230 + +0.9 415,231 - -1.1 415,231 - +0.5 415,231 - -0.8 415,290 + -1.3 415,291 - -1.7 415,313 + -1.7 415,313 + -0.0 415,314 - -0.3 415,445 + -0.8 415,541 + HGI48_RS01870 0.16 -0.5 415,541 + HGI48_RS01870 0.16 -1.9 415,541 + HGI48_RS01870 0.16 -0.5 415,541 + HGI48_RS01870 0.16 -1.6 415,541 + HGI48_RS01870 0.16 -0.1 415,541 + HGI48_RS01870 0.16 +0.5 415,542 - HGI48_RS01870 0.16 +0.4 415,542 - HGI48_RS01870 0.16 +0.2 415,749 - HGI48_RS01870 0.30 +0.9 415,772 + HGI48_RS01870 0.32 +3.6 415,772 + HGI48_RS01870 0.32 -0.0 415,772 + HGI48_RS01870 0.32 -0.7 415,772 + HGI48_RS01870 0.32 +0.1 415,772 + HGI48_RS01870 0.32 -1.4 415,772 + HGI48_RS01870 0.32 +0.2 415,772 + HGI48_RS01870 0.32 -1.4 415,772 + HGI48_RS01870 0.32 -0.7 415,773 - HGI48_RS01870 0.32 +1.6 415,773 - HGI48_RS01870 0.32 +1.9 415,778 + HGI48_RS01870 0.32 +1.2 415,779 - HGI48_RS01870 0.32 -0.1 415,845 - HGI48_RS01870 0.37 -0.5 415,932 + HGI48_RS01870 0.43 -0.1 415,933 - HGI48_RS01870 0.43 -1.8 415,970 + HGI48_RS01870 0.46 +0.9 415,970 + HGI48_RS01870 0.46 -1.4 415,970 + HGI48_RS01870 0.46 +0.1 415,970 + HGI48_RS01870 0.46 +0.6 415,971 - HGI48_RS01870 0.46 +0.2 415,971 - HGI48_RS01870 0.46 -0.9 415,971 - HGI48_RS01870 0.46 -0.9 416,054 + HGI48_RS01870 0.52 -0.2 416,084 - HGI48_RS01870 0.54 +1.3 416,112 + HGI48_RS01870 0.56 +0.3 416,138 + HGI48_RS01870 0.57 -0.8 416,138 + HGI48_RS01870 0.57 +2.6 416,138 + HGI48_RS01870 0.57 -3.9 416,139 - HGI48_RS01870 0.57 -2.8 416,228 + HGI48_RS01870 0.64 +0.2 416,228 + HGI48_RS01870 0.64 -0.2 416,228 + HGI48_RS01870 0.64 +0.5 416,228 + HGI48_RS01870 0.64 -1.8 416,228 + HGI48_RS01870 0.64 -0.1 416,228 + HGI48_RS01870 0.64 -1.0 416,228 + HGI48_RS01870 0.64 +0.5 416,228 + HGI48_RS01870 0.64 +1.0 416,229 - HGI48_RS01870 0.64 +0.2 416,256 + HGI48_RS01870 0.66 +0.1 416,270 + HGI48_RS01870 0.67 -2.1 416,270 + HGI48_RS01870 0.67 -0.1 416,270 + +3.2 416,270 + HGI48_RS01870 0.67 +0.1 416,270 + HGI48_RS01870 0.67 -0.1 416,271 - HGI48_RS01870 0.67 +0.5 416,271 - HGI48_RS01870 0.67 -0.1 416,271 - -0.7 416,271 - HGI48_RS01870 0.67 -1.4 416,271 - HGI48_RS01870 0.67 -1.6 416,273 + HGI48_RS01870 0.67 +0.5 416,273 + HGI48_RS01870 0.67 +0.2 416,273 + HGI48_RS01870 0.67 +0.4 416,274 - HGI48_RS01870 0.67 -0.4 416,274 - HGI48_RS01870 0.67 -0.2 416,274 - HGI48_RS01870 0.67 +0.1 416,299 - HGI48_RS01870 0.69 -2.1 416,299 - HGI48_RS01870 0.69 +1.5 416,299 - HGI48_RS01870 0.69 +0.2 416,321 + HGI48_RS01870 0.70 +0.9 416,321 + HGI48_RS01870 0.70 -0.1 416,322 - HGI48_RS01870 0.70 -1.1 416,325 + HGI48_RS01870 0.70 +1.3 416,325 + HGI48_RS01870 0.70 +1.7 416,326 - HGI48_RS01870 0.70 +0.1 416,326 - HGI48_RS01870 0.70 -1.3 416,364 - HGI48_RS01870 0.73 +0.1 416,429 + HGI48_RS01870 0.78 -1.1 416,430 - HGI48_RS01870 0.78 -0.1 416,430 - HGI48_RS01870 0.78 -0.7 416,433 + HGI48_RS01870 0.78 +0.1 416,433 + HGI48_RS01870 0.78 +0.6 416,433 + HGI48_RS01870 0.78 +0.9 416,434 - HGI48_RS01870 0.78 +0.9 416,434 - HGI48_RS01870 0.78 -0.1 416,490 + HGI48_RS01870 0.82 -1.1 416,490 + HGI48_RS01870 0.82 +0.8 416,490 + HGI48_RS01870 0.82 -1.3 416,490 + HGI48_RS01870 0.82 +0.3 416,490 + +1.6 416,490 + HGI48_RS01870 0.82 -0.5 416,491 - HGI48_RS01870 0.82 -1.1 416,491 - HGI48_RS01870 0.82 -0.2 416,526 + HGI48_RS01870 0.84 -0.6 416,526 + HGI48_RS01870 0.84 -0.1 416,527 - HGI48_RS01870 0.84 +0.4 416,567 + HGI48_RS01870 0.87 -1.2 416,567 + HGI48_RS01870 0.87 -0.9 416,574 + HGI48_RS01870 0.88 -1.8 416,580 + HGI48_RS01870 0.88 -0.5 416,675 + +0.8 416,675 + +0.9 416,676 - +0.2 416,676 - -0.5 416,717 + +0.9 416,717 + -0.5 416,717 + -0.2 416,717 + -0.3 416,717 + +2.5 416,718 - -0.7 416,718 - -0.6 416,718 - +0.4 416,721 - +0.5 416,783 + +2.6 416,783 + +1.5 416,783 + +1.9 416,784 - -1.7 416,784 - -0.5 416,804 - +0.2 416,829 + -0.3 416,829 + -0.4 416,829 + -1.1 416,829 + +2.2 416,830 - +0.9 416,830 - +0.8 416,872 - -0.1 416,872 - -1.1 416,914 - +0.9 416,968 + +0.9 416,968 + +0.2 416,968 + -0.8 416,968 + +0.8 416,969 - -0.1 416,969 - -2.1 416,969 - +0.9 416,975 + +0.9 416,975 + +0.1 416,975 + +0.6 416,975 + +1.2 416,975 + -0.1 416,976 - +0.3 416,978 + -1.1 416,979 - -1.4 416,979 - +0.5 416,979 - -0.1 417,041 + -0.1 417,041 + +0.2 417,042 - -1.0 417,042 - -1.4 417,048 + -0.3 417,048 + -0.8 417,049 - +0.2 417,127 + +0.4 417,347 + -0.1 417,348 - +0.1 417,384 + HGI48_RS01880 0.11 -1.7 417,442 + HGI48_RS01880 0.28 -0.8 417,442 + -0.7 417,442 + HGI48_RS01880 0.28 +0.6 417,442 + HGI48_RS01880 0.28 -0.5 417,443 - HGI48_RS01880 0.29 -1.1 417,443 - HGI48_RS01880 0.29 -1.7 417,443 - -0.1 417,443 - HGI48_RS01880 0.29 +0.7 417,494 - HGI48_RS01880 0.44 -0.6 417,494 - HGI48_RS01880 0.44 -0.7 417,517 + HGI48_RS01880 0.51 +0.3 417,518 - HGI48_RS01880 0.52 -0.8 417,518 - HGI48_RS01880 0.52 +0.7 417,518 - HGI48_RS01880 0.52 -0.2 417,528 - HGI48_RS01880 0.55 +0.9 417,528 - HGI48_RS01880 0.55 +0.9 417,550 + HGI48_RS01880 0.61 +1.2 417,551 - HGI48_RS01880 0.62 -1.9 417,587 + HGI48_RS01880 0.72 -0.3 417,607 + HGI48_RS01880 0.78 +0.0 417,607 + HGI48_RS01880 0.78 +0.6 417,608 - HGI48_RS01880 0.79 +0.9 417,608 - HGI48_RS01880 0.79 +2.1 417,608 - HGI48_RS01880 0.79 -0.4 417,608 - HGI48_RS01880 0.79 +0.5 417,628 - HGI48_RS01880 0.85 +0.0 417,661 + -1.7 417,661 + +0.3 417,662 - +0.6 417,662 - -1.7 417,675 + +1.2 417,675 + -0.2 417,693 + +0.2 417,747 + +0.4
Or see this region's nucleotide sequence