Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01770

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01765 and HGI48_RS01770 overlap by 4 nucleotidesHGI48_RS01770 and HGI48_RS01775 are separated by 84 nucleotides HGI48_RS01765: HGI48_RS01765 - sucrose-6-phosphate hydrolase, at 390,077 to 391,489 _RS01765 HGI48_RS01770: HGI48_RS01770 - PTS sucrose transporter subunit IIBC, at 391,486 to 392,859 _RS01770 HGI48_RS01775: HGI48_RS01775 - carbohydrate porin, at 392,944 to 394,560 _RS01775 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 390.493 kb on - strand, within HGI48_RS01765at 390.538 kb on + strand, within HGI48_RS01765at 390.539 kb on - strandat 390.711 kb on + strand, within HGI48_RS01765at 390.711 kb on + strand, within HGI48_RS01765at 390.732 kb on + strandat 390.733 kb on - strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.801 kb on - strand, within HGI48_RS01765at 390.801 kb on - strand, within HGI48_RS01765at 390.801 kb on - strand, within HGI48_RS01765at 390.801 kb on - strand, within HGI48_RS01765at 390.847 kb on - strand, within HGI48_RS01765at 390.847 kb on - strand, within HGI48_RS01765at 390.947 kb on + strand, within HGI48_RS01765at 390.948 kb on - strand, within HGI48_RS01765at 390.978 kb on + strand, within HGI48_RS01765at 390.978 kb on + strand, within HGI48_RS01765at 390.979 kb on - strand, within HGI48_RS01765at 390.979 kb on - strand, within HGI48_RS01765at 391.016 kb on + strand, within HGI48_RS01765at 391.016 kb on + strandat 391.017 kb on - strand, within HGI48_RS01765at 391.029 kb on + strand, within HGI48_RS01765at 391.104 kb on + strand, within HGI48_RS01765at 391.128 kb on + strand, within HGI48_RS01765at 391.129 kb on - strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strandat 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strandat 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.147 kb on - strand, within HGI48_RS01765at 391.147 kb on - strand, within HGI48_RS01765at 391.147 kb on - strand, within HGI48_RS01765at 391.147 kb on - strandat 391.147 kb on - strand, within HGI48_RS01765at 391.147 kb on - strand, within HGI48_RS01765at 391.191 kb on + strand, within HGI48_RS01765at 391.345 kb on + strand, within HGI48_RS01765at 391.422 kb on + strandat 391.422 kb on + strandat 391.422 kb on + strandat 391.422 kb on + strandat 391.423 kb on - strandat 391.508 kb on + strandat 391.568 kb on + strandat 391.569 kb on - strandat 391.569 kb on - strandat 391.569 kb on - strandat 391.571 kb on + strandat 391.571 kb on + strandat 391.571 kb on + strandat 391.571 kb on + strandat 391.572 kb on - strandat 391.572 kb on - strandat 391.591 kb on + strandat 391.591 kb on + strandat 391.592 kb on - strandat 391.592 kb on - strandat 391.592 kb on - strandat 391.814 kb on + strandat 391.814 kb on + strand, within HGI48_RS01770at 391.814 kb on + strand, within HGI48_RS01770at 391.814 kb on + strand, within HGI48_RS01770at 391.814 kb on + strand, within HGI48_RS01770at 391.815 kb on - strand, within HGI48_RS01770at 391.815 kb on - strand, within HGI48_RS01770at 391.815 kb on - strand, within HGI48_RS01770at 391.815 kb on - strandat 391.815 kb on - strand, within HGI48_RS01770at 391.816 kb on + strand, within HGI48_RS01770at 391.817 kb on - strand, within HGI48_RS01770at 391.863 kb on + strand, within HGI48_RS01770at 391.863 kb on + strand, within HGI48_RS01770at 391.863 kb on + strand, within HGI48_RS01770at 391.864 kb on - strand, within HGI48_RS01770at 391.918 kb on - strandat 391.936 kb on + strand, within HGI48_RS01770at 391.936 kb on + strand, within HGI48_RS01770at 391.936 kb on + strand, within HGI48_RS01770at 391.936 kb on + strand, within HGI48_RS01770at 391.936 kb on + strand, within HGI48_RS01770at 391.937 kb on - strand, within HGI48_RS01770at 392.023 kb on + strand, within HGI48_RS01770at 392.024 kb on - strand, within HGI48_RS01770at 392.122 kb on - strand, within HGI48_RS01770at 392.179 kb on + strand, within HGI48_RS01770at 392.409 kb on + strand, within HGI48_RS01770at 392.409 kb on + strand, within HGI48_RS01770at 392.409 kb on + strand, within HGI48_RS01770at 392.410 kb on - strand, within HGI48_RS01770at 392.410 kb on - strand, within HGI48_RS01770at 392.803 kb on - strandat 392.853 kb on + strandat 392.859 kb on + strandat 392.859 kb on + strandat 392.860 kb on - strandat 392.860 kb on - strandat 392.860 kb on - strandat 392.874 kb on - strandat 392.874 kb on - strandat 392.874 kb on - strandat 392.913 kb on + strandat 392.913 kb on + strandat 392.913 kb on + strandat 392.913 kb on + strandat 392.913 kb on + strandat 392.913 kb on + strandat 392.914 kb on - strandat 392.914 kb on - strandat 392.914 kb on - strandat 393.029 kb on + strandat 393.029 kb on + strandat 393.029 kb on + strandat 393.029 kb on + strandat 393.030 kb on - strandat 393.030 kb on - strandat 393.058 kb on - strandat 393.059 kb on + strandat 393.059 kb on + strandat 393.059 kb on + strandat 393.059 kb on + strandat 393.060 kb on - strandat 393.060 kb on - strandat 393.060 kb on - strandat 393.060 kb on - strandat 393.091 kb on + strandat 393.091 kb on + strandat 393.091 kb on + strandat 393.092 kb on - strandat 393.112 kb on + strand, within HGI48_RS01775at 393.143 kb on + strand, within HGI48_RS01775at 393.143 kb on + strand, within HGI48_RS01775at 393.143 kb on + strand, within HGI48_RS01775at 393.144 kb on - strand, within HGI48_RS01775at 393.172 kb on + strand, within HGI48_RS01775at 393.173 kb on - strand, within HGI48_RS01775at 393.176 kb on + strandat 393.176 kb on + strand, within HGI48_RS01775at 393.176 kb on + strand, within HGI48_RS01775at 393.176 kb on + strand, within HGI48_RS01775at 393.176 kb on + strand, within HGI48_RS01775at 393.177 kb on - strand, within HGI48_RS01775at 393.177 kb on - strand, within HGI48_RS01775at 393.177 kb on - strand, within HGI48_RS01775at 393.177 kb on - strand, within HGI48_RS01775at 393.177 kb on - strand, within HGI48_RS01775at 393.177 kb on - strand, within HGI48_RS01775at 393.177 kb on - strand, within HGI48_RS01775at 393.198 kb on + strand, within HGI48_RS01775at 393.198 kb on + strand, within HGI48_RS01775at 393.198 kb on + strand, within HGI48_RS01775at 393.198 kb on + strand, within HGI48_RS01775at 393.198 kb on + strand, within HGI48_RS01775at 393.198 kb on + strandat 393.198 kb on + strand, within HGI48_RS01775at 393.198 kb on + strand, within HGI48_RS01775at 393.199 kb on - strand, within HGI48_RS01775at 393.199 kb on - strand, within HGI48_RS01775at 393.199 kb on - strand, within HGI48_RS01775at 393.199 kb on - strand, within HGI48_RS01775at 393.200 kb on + strand, within HGI48_RS01775at 393.200 kb on + strand, within HGI48_RS01775at 393.200 kb on + strand, within HGI48_RS01775at 393.200 kb on + strand, within HGI48_RS01775at 393.200 kb on + strand, within HGI48_RS01775at 393.200 kb on + strand, within HGI48_RS01775at 393.200 kb on + strandat 393.200 kb on + strand, within HGI48_RS01775at 393.200 kb on + strand, within HGI48_RS01775at 393.200 kb on + strand, within HGI48_RS01775at 393.201 kb on - strand, within HGI48_RS01775at 393.201 kb on - strandat 393.201 kb on - strand, within HGI48_RS01775at 393.201 kb on - strand, within HGI48_RS01775at 393.201 kb on - strandat 393.201 kb on - strand, within HGI48_RS01775at 393.207 kb on - strand, within HGI48_RS01775at 393.207 kb on - strand, within HGI48_RS01775at 393.252 kb on + strand, within HGI48_RS01775at 393.264 kb on + strand, within HGI48_RS01775at 393.299 kb on + strand, within HGI48_RS01775at 393.352 kb on - strand, within HGI48_RS01775at 393.371 kb on + strandat 393.432 kb on + strand, within HGI48_RS01775at 393.432 kb on + strand, within HGI48_RS01775at 393.433 kb on - strandat 393.598 kb on + strand, within HGI48_RS01775at 393.598 kb on + strandat 393.598 kb on + strand, within HGI48_RS01775at 393.598 kb on + strand, within HGI48_RS01775at 393.599 kb on - strand, within HGI48_RS01775at 393.599 kb on - strand, within HGI48_RS01775at 393.599 kb on - strand, within HGI48_RS01775at 393.674 kb on + strand, within HGI48_RS01775at 393.674 kb on + strand, within HGI48_RS01775at 393.674 kb on + strand, within HGI48_RS01775at 393.674 kb on + strand, within HGI48_RS01775at 393.674 kb on + strand, within HGI48_RS01775at 393.675 kb on - strandat 393.675 kb on - strandat 393.726 kb on - strand, within HGI48_RS01775at 393.770 kb on + strand, within HGI48_RS01775at 393.771 kb on - strand, within HGI48_RS01775

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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390,493 - HGI48_RS01765 0.29 -0.1
390,538 + HGI48_RS01765 0.33 +0.4
390,539 - -0.7
390,711 + HGI48_RS01765 0.45 -0.4
390,711 + HGI48_RS01765 0.45 +0.6
390,732 + +1.3
390,733 - HGI48_RS01765 0.46 -0.4
390,800 + HGI48_RS01765 0.51 -0.7
390,800 + HGI48_RS01765 0.51 +1.6
390,800 + HGI48_RS01765 0.51 -1.7
390,800 + HGI48_RS01765 0.51 +0.7
390,800 + HGI48_RS01765 0.51 +0.2
390,800 + HGI48_RS01765 0.51 -1.6
390,800 + HGI48_RS01765 0.51 -0.1
390,800 + HGI48_RS01765 0.51 -0.7
390,801 - HGI48_RS01765 0.51 +0.2
390,801 - HGI48_RS01765 0.51 -0.1
390,801 - HGI48_RS01765 0.51 -0.4
390,801 - HGI48_RS01765 0.51 -1.1
390,847 - HGI48_RS01765 0.54 -0.1
390,847 - HGI48_RS01765 0.54 -1.0
390,947 + HGI48_RS01765 0.62 -0.1
390,948 - HGI48_RS01765 0.62 +0.1
390,978 + HGI48_RS01765 0.64 -1.4
390,978 + HGI48_RS01765 0.64 -0.0
390,979 - HGI48_RS01765 0.64 +0.3
390,979 - HGI48_RS01765 0.64 +0.0
391,016 + HGI48_RS01765 0.66 -0.5
391,016 + -0.7
391,017 - HGI48_RS01765 0.67 -0.1
391,029 + HGI48_RS01765 0.67 -0.9
391,104 + HGI48_RS01765 0.73 -1.4
391,128 + HGI48_RS01765 0.74 -0.1
391,129 - HGI48_RS01765 0.74 +0.6
391,146 + HGI48_RS01765 0.76 +0.5
391,146 + HGI48_RS01765 0.76 -0.9
391,146 + HGI48_RS01765 0.76 -1.5
391,146 + HGI48_RS01765 0.76 +1.1
391,146 + HGI48_RS01765 0.76 -1.7
391,146 + +0.9
391,146 + HGI48_RS01765 0.76 +1.0
391,146 + HGI48_RS01765 0.76 -0.4
391,146 + HGI48_RS01765 0.76 -1.0
391,146 + +1.9
391,146 + HGI48_RS01765 0.76 +0.5
391,146 + HGI48_RS01765 0.76 -0.1
391,147 - HGI48_RS01765 0.76 +0.1
391,147 - HGI48_RS01765 0.76 -1.4
391,147 - HGI48_RS01765 0.76 -0.5
391,147 - +0.3
391,147 - HGI48_RS01765 0.76 +0.9
391,147 - HGI48_RS01765 0.76 -1.1
391,191 + HGI48_RS01765 0.79 -1.5
391,345 + HGI48_RS01765 0.90 -2.1
391,422 + -1.8
391,422 + -0.3
391,422 + -0.7
391,422 + +0.3
391,423 - +0.2
391,508 + -0.1
391,568 + -0.8
391,569 - +0.3
391,569 - -0.5
391,569 - -1.7
391,571 + -0.1
391,571 + -0.7
391,571 + +0.9
391,571 + -1.4
391,572 - +0.9
391,572 - +1.6
391,591 + +1.1
391,591 + -0.7
391,592 - -0.1
391,592 - +0.6
391,592 - -0.9
391,814 + +1.9
391,814 + HGI48_RS01770 0.24 +0.1
391,814 + HGI48_RS01770 0.24 +0.7
391,814 + HGI48_RS01770 0.24 -0.4
391,814 + HGI48_RS01770 0.24 -0.7
391,815 - HGI48_RS01770 0.24 -0.7
391,815 - HGI48_RS01770 0.24 +0.9
391,815 - HGI48_RS01770 0.24 +0.7
391,815 - +0.9
391,815 - HGI48_RS01770 0.24 +0.7
391,816 + HGI48_RS01770 0.24 -2.4
391,817 - HGI48_RS01770 0.24 +0.3
391,863 + HGI48_RS01770 0.27 -0.1
391,863 + HGI48_RS01770 0.27 -2.2
391,863 + HGI48_RS01770 0.27 -0.8
391,864 - HGI48_RS01770 0.28 -0.6
391,918 - +0.3
391,936 + HGI48_RS01770 0.33 +0.4
391,936 + HGI48_RS01770 0.33 -1.9
391,936 + HGI48_RS01770 0.33 +0.9
391,936 + HGI48_RS01770 0.33 +0.2
391,936 + HGI48_RS01770 0.33 -1.9
391,937 - HGI48_RS01770 0.33 -1.1
392,023 + HGI48_RS01770 0.39 -0.4
392,024 - HGI48_RS01770 0.39 +0.1
392,122 - HGI48_RS01770 0.46 +0.1
392,179 + HGI48_RS01770 0.50 +0.5
392,409 + HGI48_RS01770 0.67 +1.3
392,409 + HGI48_RS01770 0.67 -0.7
392,409 + HGI48_RS01770 0.67 -0.3
392,410 - HGI48_RS01770 0.67 -1.4
392,410 - HGI48_RS01770 0.67 -0.4
392,803 - -1.7
392,853 + -1.1
392,859 + -1.1
392,859 + -0.4
392,860 - -1.2
392,860 - -0.6
392,860 - -0.7
392,874 - +0.9
392,874 - -0.6
392,874 - -0.4
392,913 + -0.6
392,913 + +1.3
392,913 + -0.8
392,913 + -0.4
392,913 + +0.9
392,913 + +1.2
392,914 - -0.3
392,914 - +0.5
392,914 - -0.2
393,029 + -0.7
393,029 + -1.1
393,029 + +3.4
393,029 + -1.1
393,030 - +0.1
393,030 - +1.5
393,058 - -0.7
393,059 + -0.1
393,059 + +0.0
393,059 + +1.6
393,059 + -1.7
393,060 - +0.3
393,060 - -1.0
393,060 - +0.6
393,060 - -1.1
393,091 + -0.3
393,091 + +0.7
393,091 + +0.4
393,092 - +1.1
393,112 + HGI48_RS01775 0.10 +0.3
393,143 + HGI48_RS01775 0.12 -0.8
393,143 + HGI48_RS01775 0.12 -1.4
393,143 + HGI48_RS01775 0.12 -1.2
393,144 - HGI48_RS01775 0.12 +0.6
393,172 + HGI48_RS01775 0.14 -1.4
393,173 - HGI48_RS01775 0.14 -1.9
393,176 + -0.1
393,176 + HGI48_RS01775 0.14 -0.5
393,176 + HGI48_RS01775 0.14 -0.1
393,176 + HGI48_RS01775 0.14 -1.3
393,176 + HGI48_RS01775 0.14 -1.3
393,177 - HGI48_RS01775 0.14 -1.1
393,177 - HGI48_RS01775 0.14 -1.4
393,177 - HGI48_RS01775 0.14 -0.4
393,177 - HGI48_RS01775 0.14 -1.1
393,177 - HGI48_RS01775 0.14 -1.3
393,177 - HGI48_RS01775 0.14 -0.1
393,177 - HGI48_RS01775 0.14 -0.4
393,198 + HGI48_RS01775 0.16 +0.1
393,198 + HGI48_RS01775 0.16 -2.8
393,198 + HGI48_RS01775 0.16 -1.3
393,198 + HGI48_RS01775 0.16 +0.7
393,198 + HGI48_RS01775 0.16 +0.1
393,198 + +1.6
393,198 + HGI48_RS01775 0.16 -1.3
393,198 + HGI48_RS01775 0.16 -0.9
393,199 - HGI48_RS01775 0.16 -1.3
393,199 - HGI48_RS01775 0.16 +0.4
393,199 - HGI48_RS01775 0.16 +0.8
393,199 - HGI48_RS01775 0.16 +0.9
393,200 + HGI48_RS01775 0.16 -1.1
393,200 + HGI48_RS01775 0.16 +0.9
393,200 + HGI48_RS01775 0.16 -1.7
393,200 + HGI48_RS01775 0.16 -1.7
393,200 + HGI48_RS01775 0.16 -0.5
393,200 + HGI48_RS01775 0.16 +0.7
393,200 + -0.7
393,200 + HGI48_RS01775 0.16 -1.5
393,200 + HGI48_RS01775 0.16 -0.7
393,200 + HGI48_RS01775 0.16 +1.2
393,201 - HGI48_RS01775 0.16 -1.4
393,201 - -0.1
393,201 - HGI48_RS01775 0.16 -0.9
393,201 - HGI48_RS01775 0.16 -0.9
393,201 - -0.1
393,201 - HGI48_RS01775 0.16 +0.7
393,207 - HGI48_RS01775 0.16 +0.1
393,207 - HGI48_RS01775 0.16 +0.6
393,252 + HGI48_RS01775 0.19 +0.9
393,264 + HGI48_RS01775 0.20 -0.4
393,299 + HGI48_RS01775 0.22 -1.4
393,352 - HGI48_RS01775 0.25 -0.4
393,371 + -0.7
393,432 + HGI48_RS01775 0.30 -1.0
393,432 + HGI48_RS01775 0.30 -0.4
393,433 - +0.3
393,598 + HGI48_RS01775 0.40 +0.1
393,598 + +0.3
393,598 + HGI48_RS01775 0.40 -1.6
393,598 + HGI48_RS01775 0.40 +0.1
393,599 - HGI48_RS01775 0.41 -0.1
393,599 - HGI48_RS01775 0.41 -0.5
393,599 - HGI48_RS01775 0.41 -0.1
393,674 + HGI48_RS01775 0.45 -2.4
393,674 + HGI48_RS01775 0.45 +0.9
393,674 + HGI48_RS01775 0.45 -0.3
393,674 + HGI48_RS01775 0.45 -0.6
393,674 + HGI48_RS01775 0.45 -0.4
393,675 - -0.1
393,675 - -0.7
393,726 - HGI48_RS01775 0.48 -0.3
393,770 + HGI48_RS01775 0.51 +0.0
393,771 - HGI48_RS01775 0.51 +0.3

Or see this region's nucleotide sequence